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Dr. Rakesh Prasad Sah
Associate Professor, Microbiology
Introduction
 Normal Flora refers to the population of microorganisms that inhabitat
Skin and mucous membranes of normal human body.
 In humans the normal flora is located in various sites such as
 Gastrointestinal tract (GIT)
 Respiratory Tract
 Genitourinary Tract
 Skin
 Typically NMF
 Resident Flora
 Transient Flora
Resident Flora
 Organisms  which are regularly present in a particular
area  when disturbed it re-establishes itself. (life-long
members of body normal flora). Eg. E. coli.  normal
inhabitant of Intestine.
Beneficial Role
 Prevent or suppress the colonization/invasion of the body by
pathogens.
 Bacterial flora of intestinal tract  synthesize vitamins 
vitamin K and several vitamins of B.
 Antibodies  produced in response to commensals  cross-
react with pathogens  having related or shared Ags  raise
the overall immune status of the host against pathogens.
 Colicins  produce by some organisms of NMF  have harmful
effect on pathogens.
 Edotoxins liberated by them  may help the defence
Disease Production
 Become pathogenic when host immune status is lowered.
 May act as pathogens in tissues outside their normal inhabitat
e.g. NMF of intestine  may cause UTI (urinary tract infection).
 Streptococcus mutans  may cause dental carries.
 Penicillinase  producing organisms  can aggravate infection
by interfering with therapy.
 Used of broad spectrum Antibiotics  affects the NMF by
inhibiting sensitive bacteria and thereby allowing overgrowth of
resistant bacteria.
 NMF  causes confusion in diagnosis  due to ubiquitous
Diseases produced by Normal Flora
Diseases produced by
normal flora
Anatomical site from which
the flora is transferred
Urogenital infections including
UTI
E.coli, Klebsiella, Proteus
Endocarditis Oral flora (Streptococcus
viridans)
Dental caries and periodontal
disease
Oral flora (Streptococcus
mutans)
Peritonitis, abdominal infection Intestinal flora
Pneumonia Transient respiratory flora
Transient Flora
 Consists of both non-pathogenic and potentially
pathogenic bacteria that inhabit the body surface or
mucous membrane for a limited period.
 Can be eliminated from the body surface by mechanical
means.
 Pathogens e.g. Penumococcus and meningococcus found
in nasopharynx of humans from time to time.
Anatomical
Site
Total
bacteria/ gm
or ml
Anaerobic/
Aerobic
Ratio
Anaerobic
Normal flora
(common)
Aerobic Normal flora
(common)
Mouth
Predomi
nant-
Less
predominant-
Saliva 108–109 1:1
Anaerobic
cocci
Actinomyces
Fusobacteriu
m
Bifidobacteriu
m
P.melaninoge
nica
Spirochetes
Viridans
streptococci
---
Tooth
surface
1010–1011 1:1
Gingiva 1011–1012 103:1
Nasopharynx
Predomi
nant-
Less
predominant-
Prevotella
species,
Anaerobic
cocci,
Streptococci
(α and non-
hemolytic)
Neisseria
(non-
pathogenic
Haemophilus
,
Meningococc
us,
pneumococci
,
Staphylococc
Anatomical
Site
Total
bacteria/ gm
or ml
Anaerobic/
Aerobic
Ratio
Anaerobic
Normal flora
(common)
Aerobic Normal flora
(common)
GIT
Predomi
nant-
Less
predominant-
Stomach 0–105 1:1
Lactobac
illus
Helicoba
cter
pylori
Jejunum/ile
um
104–107 1:1 Anaerobi
c cocci
Bacteroi
des
fragilis
Fusobac
terium
Bifidoba
cterium
Prevotell
a
Clostridi
Enterobacteri
aceae and
other Gram-
negative
rods,
Enterococci,
Streptoc
occi (α
and non
hemolyti
c)
S.
agalactiae
Diphtheroids
Candida
albicans
and
other
yeasts
Staphylococc
us aureus
Common
Entamoeba sp.
Common
Intestinal
Flagellates
Terminal
ileum &
colon
1011–1012 103:1
Anatomical
Site
Total
bacteria/ gm
or ml
Anaerobic/
Aerobic
Ratio
Anaerobi
c Normal
flora
(commo
n)
Aerobic Normal flora
(common)
Female genital tract Predominant
-
Less
predominant-
Vagin
a
107
–
109
10:1 Anaerobic
cocci
Lactobacillu
s
Prevotella
Bifidobacteri
um
Clostridium
Corynebacterium
species,
Lactobacillus
species,
Streptococci (α and
non hemolytic)
Neisseria (non-
pathogenic
species)
Enterococci,
Enterobacteria
ceae & other
Gram-negative
rods,
S.epidermidis,
Candida
albicans and
other yeasts
Skin Predominant- Less
predominant-
102
–
103
3:2 Propionibacteriu
m
Anaerobic
cocci
Staphylococcus
epidermidis
Diphtheroids
Micrococcus
species
Neisseria (Non-
Staphylococcu
s aureus ,
Candida
species,
Acinetobacter
species
External Auditory Meatus
 Being extension of skin, it is profusely colonised by Staph.
Epidermidis and diptherioids.
Probiotics
 Is defined as the live microorganisms (part of normal flora)
 when administered in adequate amounts, confer a health
benefit to the host.
 Are extremely useful  in conditions where the normal intestinal
flora is suppressed.
 Probiotics are commercially available in the form of capsule or
sachet  consisting of mixture of some important beneficiary
bacteria and yeast of human intestinal flora such as
 Bifidobacterium
 Lactobacillus
 Saccharomyces etc.
Beneficiary role
 To treat various forms of GIT conditions like
 Gastroenteritis due to any cause
 Antibiotics-associated diarrhoea
 Lactose intolerance
 Irritable bowel syndrome and colitis
 Necrotizing enterocolitis
 Helicobacter pylori infections.
 Reducing serum cholesterol level by breaking down bile in
the gut, thus inhibiting its reabsorption.
 Reducing blood pressure (by producing ACE inhibitor like
peptides during fermentation)
 Immune function restoration and preventing infections
 Modulate inflammatory and hypersensitivity responses,
hence can be given in allergic disorders, eczema and
atopic dermatitis.
 Bacterial vaginosis (restoring the acid pH of vagina by
lactic acid-producing bacteria).
 The live organisms contained in probiotics  must remain
live to have their action  on large intestine. More so, they
have to compete with existing flora to get themselves
established. So nowadays instead of Probiotics 
Prebiotics is being increasingly used.
Prebiotics
 Prebiotics are the dietary non-digestible fibers which when
administered, stimulate the growth and acitivity of
commensal microorganisms and thereby exert beneficiary
effect to the host indirectly.
Thank You

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Normal MicroFlora

  • 1. Dr. Rakesh Prasad Sah Associate Professor, Microbiology
  • 2. Introduction  Normal Flora refers to the population of microorganisms that inhabitat Skin and mucous membranes of normal human body.  In humans the normal flora is located in various sites such as  Gastrointestinal tract (GIT)  Respiratory Tract  Genitourinary Tract  Skin  Typically NMF  Resident Flora  Transient Flora
  • 3. Resident Flora  Organisms  which are regularly present in a particular area  when disturbed it re-establishes itself. (life-long members of body normal flora). Eg. E. coli.  normal inhabitant of Intestine.
  • 4. Beneficial Role  Prevent or suppress the colonization/invasion of the body by pathogens.  Bacterial flora of intestinal tract  synthesize vitamins  vitamin K and several vitamins of B.  Antibodies  produced in response to commensals  cross- react with pathogens  having related or shared Ags  raise the overall immune status of the host against pathogens.  Colicins  produce by some organisms of NMF  have harmful effect on pathogens.  Edotoxins liberated by them  may help the defence
  • 5. Disease Production  Become pathogenic when host immune status is lowered.  May act as pathogens in tissues outside their normal inhabitat e.g. NMF of intestine  may cause UTI (urinary tract infection).  Streptococcus mutans  may cause dental carries.  Penicillinase  producing organisms  can aggravate infection by interfering with therapy.  Used of broad spectrum Antibiotics  affects the NMF by inhibiting sensitive bacteria and thereby allowing overgrowth of resistant bacteria.  NMF  causes confusion in diagnosis  due to ubiquitous
  • 6. Diseases produced by Normal Flora Diseases produced by normal flora Anatomical site from which the flora is transferred Urogenital infections including UTI E.coli, Klebsiella, Proteus Endocarditis Oral flora (Streptococcus viridans) Dental caries and periodontal disease Oral flora (Streptococcus mutans) Peritonitis, abdominal infection Intestinal flora Pneumonia Transient respiratory flora
  • 7. Transient Flora  Consists of both non-pathogenic and potentially pathogenic bacteria that inhabit the body surface or mucous membrane for a limited period.  Can be eliminated from the body surface by mechanical means.  Pathogens e.g. Penumococcus and meningococcus found in nasopharynx of humans from time to time.
  • 8. Anatomical Site Total bacteria/ gm or ml Anaerobic/ Aerobic Ratio Anaerobic Normal flora (common) Aerobic Normal flora (common) Mouth Predomi nant- Less predominant- Saliva 108–109 1:1 Anaerobic cocci Actinomyces Fusobacteriu m Bifidobacteriu m P.melaninoge nica Spirochetes Viridans streptococci --- Tooth surface 1010–1011 1:1 Gingiva 1011–1012 103:1 Nasopharynx Predomi nant- Less predominant- Prevotella species, Anaerobic cocci, Streptococci (α and non- hemolytic) Neisseria (non- pathogenic Haemophilus , Meningococc us, pneumococci , Staphylococc
  • 9. Anatomical Site Total bacteria/ gm or ml Anaerobic/ Aerobic Ratio Anaerobic Normal flora (common) Aerobic Normal flora (common) GIT Predomi nant- Less predominant- Stomach 0–105 1:1 Lactobac illus Helicoba cter pylori Jejunum/ile um 104–107 1:1 Anaerobi c cocci Bacteroi des fragilis Fusobac terium Bifidoba cterium Prevotell a Clostridi Enterobacteri aceae and other Gram- negative rods, Enterococci, Streptoc occi (α and non hemolyti c) S. agalactiae Diphtheroids Candida albicans and other yeasts Staphylococc us aureus Common Entamoeba sp. Common Intestinal Flagellates Terminal ileum & colon 1011–1012 103:1
  • 10. Anatomical Site Total bacteria/ gm or ml Anaerobic/ Aerobic Ratio Anaerobi c Normal flora (commo n) Aerobic Normal flora (common) Female genital tract Predominant - Less predominant- Vagin a 107 – 109 10:1 Anaerobic cocci Lactobacillu s Prevotella Bifidobacteri um Clostridium Corynebacterium species, Lactobacillus species, Streptococci (α and non hemolytic) Neisseria (non- pathogenic species) Enterococci, Enterobacteria ceae & other Gram-negative rods, S.epidermidis, Candida albicans and other yeasts Skin Predominant- Less predominant- 102 – 103 3:2 Propionibacteriu m Anaerobic cocci Staphylococcus epidermidis Diphtheroids Micrococcus species Neisseria (Non- Staphylococcu s aureus , Candida species, Acinetobacter species
  • 11. External Auditory Meatus  Being extension of skin, it is profusely colonised by Staph. Epidermidis and diptherioids.
  • 12. Probiotics  Is defined as the live microorganisms (part of normal flora)  when administered in adequate amounts, confer a health benefit to the host.  Are extremely useful  in conditions where the normal intestinal flora is suppressed.  Probiotics are commercially available in the form of capsule or sachet  consisting of mixture of some important beneficiary bacteria and yeast of human intestinal flora such as  Bifidobacterium  Lactobacillus  Saccharomyces etc.
  • 13. Beneficiary role  To treat various forms of GIT conditions like  Gastroenteritis due to any cause  Antibiotics-associated diarrhoea  Lactose intolerance  Irritable bowel syndrome and colitis  Necrotizing enterocolitis  Helicobacter pylori infections.  Reducing serum cholesterol level by breaking down bile in the gut, thus inhibiting its reabsorption.
  • 14.  Reducing blood pressure (by producing ACE inhibitor like peptides during fermentation)  Immune function restoration and preventing infections  Modulate inflammatory and hypersensitivity responses, hence can be given in allergic disorders, eczema and atopic dermatitis.  Bacterial vaginosis (restoring the acid pH of vagina by lactic acid-producing bacteria).
  • 15.  The live organisms contained in probiotics  must remain live to have their action  on large intestine. More so, they have to compete with existing flora to get themselves established. So nowadays instead of Probiotics  Prebiotics is being increasingly used.
  • 16. Prebiotics  Prebiotics are the dietary non-digestible fibers which when administered, stimulate the growth and acitivity of commensal microorganisms and thereby exert beneficiary effect to the host indirectly.