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DNA REPLICATION
RITTU CHANDEL
JR(MD BIOCHEMISTRY)
30-04-2013
REPLICATION
• A process in which DNA copies itself to produce
identical daughter molecules of DNA
• It is carried out with high fidelity
MESELSON AND STAHL EXPERIMENT
conclusion:
Semiconservative
replication
REPLICATION begins at origin;
proceeds bidirectionaly
1.Cairns experiment:
Both DNA strands replicate
simultaneously
2.Inman’s denaturation
technique
DNA synthesis is SEMIDISCONTINUOUS
DNA POLYMERASE
3 important properties
Bacteria- 5 polymerases
Dna polymerase1
3 ' - 5 ' and 5 ' - 3 ' exonuclease activity
5 ' - 3 ' endonuclease activity
Klenow fragment
When DNA
polymerase can
replicate DNA why
other enzymes
required?
REPLICATION- very accurate
DNA POLYMERASE 3(replicase)-main
replication enzyme
Comparisonoftwotypesofnick
sealingreactions
1. initiation
• elongation
elongation
Final step in synthesis of lagging
strands
3.termination
MEMBRANE BOUND REPLICATION
DNA replication IN EUKARYOTES
1. CELL CYCLE
2. ORIGIN OF REPLICATION
Why many origin
of replication?
150 hrs in
comparison to 9
hrs
3. EUKARYOTIC DNA POLYMERASE
• Eukaryotic enzymes
• PCNA
• RFC(replication factor C)
• MCM
• Prokaryotic counterparts
• Β sliding clamp
• Γ complex (clamp loader)
• helicases
4. REPLICATION
Primase associated with pol α—produces RNA primer
Adds deoxynucleotides to RNA and dissociates from
template
Pol δ adds deoxynucleotides on both
leading as well as lagging strand
REPLICATION AT ENDS OF
CHROMOSOME
DIFFERENCE
• PROKARYOTIC REPLICATION
1. Initiation point specific(ori)
2. DNA poly-1,2,3,4,5
3. No mitochondria
4. Replication with only 1
replication fork
5. Theta structure observed
6. Only unwinding takes place
7. RNA as primer
8. Okazaki fragments are large
• EUKARYOTIC REPLICATION
1. Many ori
2. Many types-α, β, γ, δ, ε
3. γ DNA polymerase found in
mitochondria
4. Many replication forks
5. Theta structure not observed
6. Histone seperation as well as
unwinding
7. RNA/DNA as primer
8. Okazaki fragments are small
Inhibitors of DNA replication
• That affect either template or priming ability of
the growing strand
1. Intercalating agents-
anthracyclins(daunorubicin,doxorubicin)
2. Chain breakage-bleomycin
3. Interstrand crosslinks-mitomycin,nitrogen
mustard
• Act directly on polymerase or other enzymes
1. Acyclovir
2. DNA gyrase inhibitor-nalidixic acid
3. Topoisomerase 1 inhibitor- quinolone
BIBLIOGRAPHY
• SATYANARYAN
• VASUDEVAN
• RANA SHINDE
• LIPPINCOTT
• HARPER
• LEHNINGER
• BHAGVAN
• MARKS
• VOET
THANK YOU

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DNA replication process

Editor's Notes

  1. Dna –macromolecule-genetic info from 1 to other generation,bp rule mntd,new strand joijnd to old strand by h bonds,high fidelity-mtn genetic stability ,paradox
  2. Parent dna -2 strands complementary to each other,both undergo simultaneous repli,
  3. Prok-1,eukar-multiple,site mostly consist of short sequence of a-t,2 complementary strand sep at site of repli to form bubble,thetarepli
  4. Dna-ds and antiparrallelREPLI IN 5- 3 DIRECTIONsimult, enzyme capable of polymerising in 3-5 doesn’t exist in any org,lead(frward)-cont towards replifork.,lagg(retrograde)-discont(against),sepr of 2 strands reults in y shaped repli fork
  5. 5-3 removed –klenow- in recombinant techno.dna poly-chain elongation,processivity,proofreadin
  6. Nucleophilic attack by 3-oh grp of rnaprimeronα phosphate of the first enterindntp with release of pyrophosphatein order to drive the reaction to right,pp removed by pyrophosphataserelease of pp n its subsequent clevage provides energy that ddrivespolynerization
  7. Nick translation-imp lab procedure for producing labelleddna-used as probes-diagnostic n forensic
  8. Pol3 holoenzyme-cntns several diff subunits,retains sum activity even 1 or more subunit ismissin.b subunit-sliding clamp-protein is a dimer of c shaped monomer-pseudosymmetrical 6 ptdstar,+vely charged on inner surface,-ve charge on outer surfacegamma comp-clamp lloader.binds tightly to core
  9. 1Topoisomerase-nuclease+ligase(overcumsupercoils);2 topo(gyrase)-cuts both strandsn reseals. Ligase-catalyses formation of phosphodiesterbwdnasynth by dna pol3 n dna pol1,req energy
  10. Helicases-zip opener,atpdependent,ssb-not enzyme-keep 2 strands separate;protect degradation by nucleases
  11. Synth of newdna-abt 5- 50 ntrnareqd as primer(rna polymerase=primase),primase is imp as dna polymerase cant syn de novo,constantsynand supply of rna primer on lagging strand;leadin-1 primercomplex of helicase+primase=primosome
  12. 5-3 EXONUCLEASE FN,addsdeoxynt to 3 end of newly synthokazaki.in effect translates the nick at 5 end of rna to that occupied by 3 end
  13. Dormant or non dividing- g0,g1 –active protein syn,g2-enlarment of cell cytoplasm.s phase-greater quantities of dna poly a,all enzymes increased.,nucleardna is replicated once n only once
  14. Many ori aka autonomous replicatin sequence(ars);oricntns base baseseqcald as origin replication element(ore).origin recognition complex
  15. Pol e-syn on lagg. pol a-analo to pol3-multisubunit enzyme.lacks 3- 5 exonuclease.a protein subunit in holoenzyme enables it to bind diadenosine tetra phosphate(small molecule that stimulatsrepli of mammalian cells n is growth signal)major n pcna=identical to b clamp
  16. Shortenin-aplasticanemia,immortality-tumor cells,regulated by trf1(length of telomerase) n trf2(protects the ends).tankrase-alters activity of trf1