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BIOTECHNOLOGY PPT
TOPIC:DNA REPLICATION
CONTENTS
 What is DNA REPLICATION ?
 Structure of DNA
 Meselson & stahl’s Experiment.
 Separation of DNA by Centrifugation.
 What is DNA Replication ?
 What is the role of enzymes in DNA REPLICATION ?
 Steps of DNA Replication
 DNA Replication in prokaryotes and Eukaryotes
What is DNA?
Deoxyribonucleic acid (DNA) is a nucleic
acid that is made up of three components:
a deoxyribose sugar, a phosphate, and a
nitrogenous base.
DNA is the genetic material via which a
cell is defined. It is a long molecule
containing unique codes that give
instructions for the synthesis of all body
proteins.
STRUCTURE OF DNA
 The structural model of DNA was initially proposed by James Watson and Francis
Click.
 They found that DNA is a double-helical structure with two paired DNA strands
with complementary nucleotide sequences.
 DNA is made up of millions of nucleotides. Nucleotides are molecules that are
composed of deoxyribose sugar, with a phosphate group and a nucleobase that is
attached to it.
 Each nucleotide is tightly base paired with a complementary nucleotide on the
opposite strand, i.e. Adenine (A) paired with Thymine (T) or Guanine (G) paired
with cytosine (C), and therefore one strand’s sequence acts as a template for the
new strand to be formed during replication.
 Nucleotides are bound to each other in strands via phosphodiester bonds forming a
sugar-phosphate backbone.
 They form a bond that is between the third carbon atom on the deoxyribose sugar
made up of one sugar thus it is designated as the 3′ (three prime) and the fifth
carbon atom of another sugar on the next nucleotide as the 5′ (five prime).
THE Chemical Structure of DNA
Meselson and Stahl Experiment
 Meselson and Stahl Experiment was an experimental proof for
semiconservative DNA replication.
 Matthew Meselson and Franklin stahl in 1958 performed experiment on E
coli to prove that DNA replication is semi-conservative .
1. EXPERIMENT
 Meselson and Stahl grew E.coli on a medium that contains 15NH4Cl as the
only nitrogen source for many generations [Note: 15N is the heavy isotope
of nitrogen]. As a result, all newly synthesized DNA had 15N which can be
differentiated from normal DNA by centrifugation in a caesium chloride
(CsCl) density gradient.
 They then transferred the cells to a medium containing normal 14NH4Cl.
 As the cells multiplied, they collected samples at time intervals (20mins,
40mins, 60mins etc.). This is because E. Coli cells divide every 20
minutes. They then extracted the double-stranded DNA from the samples
and separated them on CsCl gradients to measure the DNA densities.
Separation of DNA By Centrifugation
RESULT
 DNA extracted after 20 minutes (one generation) in the
14NH4Cl medium had an intermediate density. This is
because it contained one parental DNA strand with the
heavy 15N and one new DNA strand with the light 14N to
give 15N14N.
 DNA extracted after 40 minutes (two generations) in the
14NH4Cl medium showed equal amounts of intermediate
density and light density. This is because it contained
equal amounts of the hybrid 15N14N DNA (intermediate)
and 14N14N DNA (light).
CONCLUSION
 Based on observations and experimental results,
Meselson and Stahl concluded that DNA molecules
can replicate semi-conservatively. Investigation of
semi-conservative nature of replication of DNA or
the copying of the cells, DNA didn’t end there.
Followed by Meselson and Stahl experiment, Taylor
and colleagues conducted another experiment on
Vicia faba (fava beans) which again proved that
replication of DNA is semi-conservative.
What is DNA Replication?
 This is a complex process that takes place during cell division, (interphase, S phase)
whereby DNA makes copies (duplicates) before the cell divides through mitosis and
meiosis.
 DNA replication is a semiconservative process where a parental strand (template) is
used to synthesize a new complementary daughter strand using several protein
elements which include enzymes and RNA molecules.
 DNA replication process uses DNA polymerase as the main enzyme for catalysing the
joining of deoxyribonucleoside 5′-triphosphates (dNTPs) forming a growing chain of
DNA.
 Other proteins are also involved for initiation of the process and copying of DNA, along
with proofreading capabilities to ensure the replication process takes place accurately.
 Therefore DNA replication is a process that produces identical helices of DNA from a
single strand of the DNA molecule.
 DNA replication is an essential mechanism in enhancing cell growth, repair, and
reproduction of an organism.
Role of Enzymes in DNA Replication
DNA replication is a highly enzyme-dependent
process. There are many enzymes involved in
DNA replication, which includes the enzymes,
DNA-dependent DNA polymerase, helicase,
ligase, etc. Among them, DNA-dependent
DNA polymerase is the main enzyme.
DNA-dependent DNA polymerase
 It helps in the polymerisation, catalyses and regularises the whole process
of DNA replication with the support of other enzymes.
Deoxyribonucleoside triphosphates are the substrate as well as the energy
provider for the replication process. DNA polymerase is of three types:
1.DNA Polymerase I
It is a DNA repair enzyme. It is involved in three activities:
5′-3′ polymerase activity
5′-3′ exonuclease activity
3′-5′ exonuclease activity .
2.DNA Polymerase II
It is responsible for primer extension and proofreading.
3.DNA Polymerase III
It is responsible for in vivo DNA replication.
Helicase
helicase is the enzyme, which unzips the DNA strands by breaking the hydrogen
bonds between them. Thus, it helps in the formation of the replication fork.
Ligase
Ligase is the enzyme which joins together the Okazaki fragments of the
discontinuous DNA strands.
Primase
This enzyme helps in the synthesis of RNA primer complementary to the
DNA template strand.
Endonucleases
These produce a single-stranded or a double-stranded cut in a DNA
molecule.
Single-stranded Binding Proteins
It binds to single-stranded DNA and protects it from forming secondary
structures.
DNA REPLICATION STEPS
1. Initiation
 DNA replication demands a high degree of accuracy because even a minute
mistake would result in mutations. Thus, replication cannot initiate
randomly at any point in DNA.
 For the replication to begin there is a particular region called the origin of
replication. This is the point where the replication originates. Replication
begins with the spotting of this origin followed by the unwinding of the
two DNA strands.
 Unzipping of DNA strands in their entire length is not feasible due to high
energy input. Hence, first, a replication fork is created catalysed by the
helicase enzyme, which unzips the DNA strand.
2.ELONGATION
 As the strands are separated, the polymerase enzymes start synthesising the
complementary sequence in each of the strands. The parental strands will act
as a template for newly synthesising daughter strands.
 It is to be noted that elongation is unidirectional i.e. DNA is always
polymerised only in the 5′ to 3′ direction.
 Therefore, in one strand (the template 3‘→5‘) it is continuous, hence called
continuous replication while on the other strand (the template 5‘→3‘) it is
discontinuous replication.
 They occur as fragments called Okazaki fragments. The enzyme called DNA
ligase joins them later.
REPLICATION FORK
3.TERMINATION
 Termination of replication occurs in different ways in different organisms. In
E.coli like organisms, chromosomes are circular. And this happens when the
two replication forks between the two terminals meet each other.
DNA Replication Process in Prokaryotes
 The DNA replication in prokaryotes takes place in the following place:
1. The two strands of DNA unwind at the origin of replication.
2. Helicase opens the DNA and replication forks are formed.
3. The DNA is coated by the single-strand binding proteins around the replication
fork to prevent rewinding of DNA.
4. Topoisomerase prevents the supercoiling of DNA.
5. RNA primers are synthesised by primase. These primers are complementary to
the DNA strand.
6. DNA polymerase III starts adding nucleotides at the end of the primers.
7. The leading and lagging strands continue to elongate.
8. The primers are removed and the gaps are filled with DNA Polymerase I and
sealed by ligase.
DNA Replication in Eukaryotes
The DNA replication in eukaryotes is
similar to the DNA replication in
prokaryotes. However, the initiation
process is more complex in eukaryotes
than prokaryotes. In eukaryotes, there
are multiple origins of replication
present. A pre-replication complex is
made with other initiator proteins. The
process is entirely the same but the
enzymes used are different. E.g. In
eukaryotes, the polymerisation process
is carried out by the enzyme Pol δ,
whereas in prokaryotes it is done by
DNA Pol III.
THE END
🙏🙏THANK YOU ALL🙏🙏
Made By : T.Ramyasri
Bsc 2nd year (Life Science )
subject : BIOTECHNOLOGY
Roll. No : 110121342005

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Presentation.pptx

  • 3. CONTENTS  What is DNA REPLICATION ?  Structure of DNA  Meselson & stahl’s Experiment.  Separation of DNA by Centrifugation.  What is DNA Replication ?  What is the role of enzymes in DNA REPLICATION ?  Steps of DNA Replication  DNA Replication in prokaryotes and Eukaryotes
  • 4. What is DNA? Deoxyribonucleic acid (DNA) is a nucleic acid that is made up of three components: a deoxyribose sugar, a phosphate, and a nitrogenous base. DNA is the genetic material via which a cell is defined. It is a long molecule containing unique codes that give instructions for the synthesis of all body proteins.
  • 5. STRUCTURE OF DNA  The structural model of DNA was initially proposed by James Watson and Francis Click.  They found that DNA is a double-helical structure with two paired DNA strands with complementary nucleotide sequences.  DNA is made up of millions of nucleotides. Nucleotides are molecules that are composed of deoxyribose sugar, with a phosphate group and a nucleobase that is attached to it.  Each nucleotide is tightly base paired with a complementary nucleotide on the opposite strand, i.e. Adenine (A) paired with Thymine (T) or Guanine (G) paired with cytosine (C), and therefore one strand’s sequence acts as a template for the new strand to be formed during replication.  Nucleotides are bound to each other in strands via phosphodiester bonds forming a sugar-phosphate backbone.  They form a bond that is between the third carbon atom on the deoxyribose sugar made up of one sugar thus it is designated as the 3′ (three prime) and the fifth carbon atom of another sugar on the next nucleotide as the 5′ (five prime).
  • 7. Meselson and Stahl Experiment  Meselson and Stahl Experiment was an experimental proof for semiconservative DNA replication.  Matthew Meselson and Franklin stahl in 1958 performed experiment on E coli to prove that DNA replication is semi-conservative . 1. EXPERIMENT  Meselson and Stahl grew E.coli on a medium that contains 15NH4Cl as the only nitrogen source for many generations [Note: 15N is the heavy isotope of nitrogen]. As a result, all newly synthesized DNA had 15N which can be differentiated from normal DNA by centrifugation in a caesium chloride (CsCl) density gradient.  They then transferred the cells to a medium containing normal 14NH4Cl.  As the cells multiplied, they collected samples at time intervals (20mins, 40mins, 60mins etc.). This is because E. Coli cells divide every 20 minutes. They then extracted the double-stranded DNA from the samples and separated them on CsCl gradients to measure the DNA densities.
  • 8.
  • 9. Separation of DNA By Centrifugation
  • 10. RESULT  DNA extracted after 20 minutes (one generation) in the 14NH4Cl medium had an intermediate density. This is because it contained one parental DNA strand with the heavy 15N and one new DNA strand with the light 14N to give 15N14N.  DNA extracted after 40 minutes (two generations) in the 14NH4Cl medium showed equal amounts of intermediate density and light density. This is because it contained equal amounts of the hybrid 15N14N DNA (intermediate) and 14N14N DNA (light).
  • 11. CONCLUSION  Based on observations and experimental results, Meselson and Stahl concluded that DNA molecules can replicate semi-conservatively. Investigation of semi-conservative nature of replication of DNA or the copying of the cells, DNA didn’t end there. Followed by Meselson and Stahl experiment, Taylor and colleagues conducted another experiment on Vicia faba (fava beans) which again proved that replication of DNA is semi-conservative.
  • 12. What is DNA Replication?  This is a complex process that takes place during cell division, (interphase, S phase) whereby DNA makes copies (duplicates) before the cell divides through mitosis and meiosis.  DNA replication is a semiconservative process where a parental strand (template) is used to synthesize a new complementary daughter strand using several protein elements which include enzymes and RNA molecules.  DNA replication process uses DNA polymerase as the main enzyme for catalysing the joining of deoxyribonucleoside 5′-triphosphates (dNTPs) forming a growing chain of DNA.  Other proteins are also involved for initiation of the process and copying of DNA, along with proofreading capabilities to ensure the replication process takes place accurately.  Therefore DNA replication is a process that produces identical helices of DNA from a single strand of the DNA molecule.  DNA replication is an essential mechanism in enhancing cell growth, repair, and reproduction of an organism.
  • 13.
  • 14. Role of Enzymes in DNA Replication DNA replication is a highly enzyme-dependent process. There are many enzymes involved in DNA replication, which includes the enzymes, DNA-dependent DNA polymerase, helicase, ligase, etc. Among them, DNA-dependent DNA polymerase is the main enzyme.
  • 15. DNA-dependent DNA polymerase  It helps in the polymerisation, catalyses and regularises the whole process of DNA replication with the support of other enzymes. Deoxyribonucleoside triphosphates are the substrate as well as the energy provider for the replication process. DNA polymerase is of three types: 1.DNA Polymerase I It is a DNA repair enzyme. It is involved in three activities: 5′-3′ polymerase activity 5′-3′ exonuclease activity 3′-5′ exonuclease activity . 2.DNA Polymerase II It is responsible for primer extension and proofreading. 3.DNA Polymerase III It is responsible for in vivo DNA replication.
  • 16. Helicase helicase is the enzyme, which unzips the DNA strands by breaking the hydrogen bonds between them. Thus, it helps in the formation of the replication fork. Ligase Ligase is the enzyme which joins together the Okazaki fragments of the discontinuous DNA strands. Primase This enzyme helps in the synthesis of RNA primer complementary to the DNA template strand. Endonucleases These produce a single-stranded or a double-stranded cut in a DNA molecule. Single-stranded Binding Proteins It binds to single-stranded DNA and protects it from forming secondary structures.
  • 17. DNA REPLICATION STEPS 1. Initiation  DNA replication demands a high degree of accuracy because even a minute mistake would result in mutations. Thus, replication cannot initiate randomly at any point in DNA.  For the replication to begin there is a particular region called the origin of replication. This is the point where the replication originates. Replication begins with the spotting of this origin followed by the unwinding of the two DNA strands.  Unzipping of DNA strands in their entire length is not feasible due to high energy input. Hence, first, a replication fork is created catalysed by the helicase enzyme, which unzips the DNA strand.
  • 18. 2.ELONGATION  As the strands are separated, the polymerase enzymes start synthesising the complementary sequence in each of the strands. The parental strands will act as a template for newly synthesising daughter strands.  It is to be noted that elongation is unidirectional i.e. DNA is always polymerised only in the 5′ to 3′ direction.  Therefore, in one strand (the template 3‘→5‘) it is continuous, hence called continuous replication while on the other strand (the template 5‘→3‘) it is discontinuous replication.  They occur as fragments called Okazaki fragments. The enzyme called DNA ligase joins them later.
  • 20. 3.TERMINATION  Termination of replication occurs in different ways in different organisms. In E.coli like organisms, chromosomes are circular. And this happens when the two replication forks between the two terminals meet each other.
  • 21.
  • 22.
  • 23.
  • 24.
  • 25. DNA Replication Process in Prokaryotes  The DNA replication in prokaryotes takes place in the following place: 1. The two strands of DNA unwind at the origin of replication. 2. Helicase opens the DNA and replication forks are formed. 3. The DNA is coated by the single-strand binding proteins around the replication fork to prevent rewinding of DNA. 4. Topoisomerase prevents the supercoiling of DNA. 5. RNA primers are synthesised by primase. These primers are complementary to the DNA strand. 6. DNA polymerase III starts adding nucleotides at the end of the primers. 7. The leading and lagging strands continue to elongate. 8. The primers are removed and the gaps are filled with DNA Polymerase I and sealed by ligase.
  • 26. DNA Replication in Eukaryotes The DNA replication in eukaryotes is similar to the DNA replication in prokaryotes. However, the initiation process is more complex in eukaryotes than prokaryotes. In eukaryotes, there are multiple origins of replication present. A pre-replication complex is made with other initiator proteins. The process is entirely the same but the enzymes used are different. E.g. In eukaryotes, the polymerisation process is carried out by the enzyme Pol δ, whereas in prokaryotes it is done by DNA Pol III.
  • 27. THE END 🙏🙏THANK YOU ALL🙏🙏 Made By : T.Ramyasri Bsc 2nd year (Life Science ) subject : BIOTECHNOLOGY Roll. No : 110121342005