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Presented by:-
SALMAN KHAN
MSc-3rd Sem
Botany Department
University of Allahabad
Presented To:-
Dr. DK Yadav
Dr. RK Yadav
Topic:- Fluorescence Microscopy
UNIERSITY OF ALLAHABAD
 A fluorescence microscope is an optical microscope that uses
fluorescence and phosphorescence instead of, or in addition to,
reflection and absorption to study properties of organic or inorganic
substances.
Fluorescence Microscopy:-
Fluorescence:-
 Fluorescence is the emission of light by a substance that has absorbed
light or other electromagnetic radiation.
Phosphorescence:-
 Phosphorescence is a specific type of photoluminescence related to
fluorescence.
Principal of Fluorescence Microscopy:-
 Most cellular components are colorless and cannot be clearly distinguished under a
microscope. The basic premise of fluorescence microscopy is to stain the components with
dyes.
 Fluorescent dyes, also known as fluorophores of fluorochromes, are molecules that absorb
excitation light at a given wavelength (generally UV), and after a short delay emit light at a
longer wavelength. The delay between absorption and emission is negligible, generally on
the order of nanoseconds.
 The emission light can then be filtered from the excitation light to reveal the location of the
fluorophores.
 Light of the excitation wavelength is focused on the specimen through the objective
lens.
 The fluorescence emitted by the specimen is focused to the detector by the
objective.
 Since most of the excitation light is transmitted through the specimen, only
reflected excitatory light reaches the objective together with the emitted light.
Working:-
Principle:-
Instrumentation of Fluorescence Microscope:-
 Fluorescence dyes (Fluorophore)
 Light source
 Excitation filter
 Dichromic mirror
 Emission filter
Applications of Fluorescence Microscope:-
 To identify structures in fixed and live biological samples.
 Fluorescence microscopy is a common tool for today’s life science research
because it allows the use of multicolor staining, labelling of structures
within cells, and the measurement of the physiological state of a cell.
 Fluorescence microscopy is the most popular method for studying the dynamic behavior
exhibited in live cell imaging.
 This stems from its ability to isolate individual proteins with a high degree of specificity
amidst non-fluorescing material.
 The sensitivity is high enough to detect as few as 50 molecules per cubic micrometer.
 Different molecules can now be stained with different colors, allowing multiple types of
molecule to be tracked simultaneously.
 These factors combine to give fluorescence microscopy a clear advantage over other
optical imaging techniques, for both in vitro and in vivo imaging.
Advantages of Fluorescence Microscope:-
 Fluorophores lose their ability to fluoresce as they are illuminated in a process called
photobleaching. Photobleaching occurs as the fluorescent molecules accumulate
chemical damage from the electrons excited during fluorescence.
 Cells are susceptible to phototoxicity, particularly with short wavelength light.
Furthermore, fluorescent molecules have a tendency to generate reactive chemical
species when under illumination which enhances the phototoxic effect.
 Unlike transmitted and reflected light microscopy techniques fluorescence microscopy
only allows observation of the specific structures which have been labeled for
fluorescence.
Limitations of Fluorescence Microscope:-

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Fluorescence Microscopy

  • 1. Presented by:- SALMAN KHAN MSc-3rd Sem Botany Department University of Allahabad Presented To:- Dr. DK Yadav Dr. RK Yadav Topic:- Fluorescence Microscopy UNIERSITY OF ALLAHABAD
  • 2.  A fluorescence microscope is an optical microscope that uses fluorescence and phosphorescence instead of, or in addition to, reflection and absorption to study properties of organic or inorganic substances. Fluorescence Microscopy:- Fluorescence:-  Fluorescence is the emission of light by a substance that has absorbed light or other electromagnetic radiation. Phosphorescence:-  Phosphorescence is a specific type of photoluminescence related to fluorescence.
  • 4.  Most cellular components are colorless and cannot be clearly distinguished under a microscope. The basic premise of fluorescence microscopy is to stain the components with dyes.  Fluorescent dyes, also known as fluorophores of fluorochromes, are molecules that absorb excitation light at a given wavelength (generally UV), and after a short delay emit light at a longer wavelength. The delay between absorption and emission is negligible, generally on the order of nanoseconds.  The emission light can then be filtered from the excitation light to reveal the location of the fluorophores.  Light of the excitation wavelength is focused on the specimen through the objective lens.  The fluorescence emitted by the specimen is focused to the detector by the objective.  Since most of the excitation light is transmitted through the specimen, only reflected excitatory light reaches the objective together with the emitted light. Working:- Principle:-
  • 5. Instrumentation of Fluorescence Microscope:-  Fluorescence dyes (Fluorophore)  Light source  Excitation filter  Dichromic mirror  Emission filter Applications of Fluorescence Microscope:-  To identify structures in fixed and live biological samples.  Fluorescence microscopy is a common tool for today’s life science research because it allows the use of multicolor staining, labelling of structures within cells, and the measurement of the physiological state of a cell.
  • 6.  Fluorescence microscopy is the most popular method for studying the dynamic behavior exhibited in live cell imaging.  This stems from its ability to isolate individual proteins with a high degree of specificity amidst non-fluorescing material.  The sensitivity is high enough to detect as few as 50 molecules per cubic micrometer.  Different molecules can now be stained with different colors, allowing multiple types of molecule to be tracked simultaneously.  These factors combine to give fluorescence microscopy a clear advantage over other optical imaging techniques, for both in vitro and in vivo imaging. Advantages of Fluorescence Microscope:-
  • 7.  Fluorophores lose their ability to fluoresce as they are illuminated in a process called photobleaching. Photobleaching occurs as the fluorescent molecules accumulate chemical damage from the electrons excited during fluorescence.  Cells are susceptible to phototoxicity, particularly with short wavelength light. Furthermore, fluorescent molecules have a tendency to generate reactive chemical species when under illumination which enhances the phototoxic effect.  Unlike transmitted and reflected light microscopy techniques fluorescence microscopy only allows observation of the specific structures which have been labeled for fluorescence. Limitations of Fluorescence Microscope:-