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Recent Advances in microscopy to view
the ultrastructure of the cell
Presented By
Divya S- I Ph.D (GPB)
2019608004
Scanning electron microscope
• A SEM is a type of electron microscope that images a sample by
scanning it with a by a high energy beam of electrons in a raster scan
pattern
• The electrons interact with the atoms that make up the sample
producing the signals that contain the information about the samples
surface topography, composition and other properties such as
electrical conductivity
Cryo-electron tomography (cryo-ET)
• Electron microscopy (EM) has been pivotal in providing information
about cellular ultrastructure, as well as macromolecular organization
• Biological materials can be physically fixed by vitrification and imaged
with cryo-electron tomography (cryo-ET) in a close-to-native
condition
• Using this technique, one can acquire three-dimensional (3D)
information about the macromolecular architecture of cells, depict
unique cellular states and reconstruct molecular networks
Cellular tomography
• Cellular processes, such as cell adhesion and mitosis, can be
investigated by cryo-ET. This approach can also be used to observe
the cytoskeleton (Kürner et al., 2004; Medalia et al., 2002, 2007).
• Early studies of the actin cytoskeleton were mostly focused on
morphological observations within the EM data.
• With the recent advances in cryo-ET, we can now evaluate some
filament properties within cells and even detect the helical pitch of
individual actin filaments . This makes it possible to determine the
polarity of each actin filament within the cytoskeletal network.
Cellular tomography performed with phase
plates
• EM is mainly limited by how far electrons can penetrate through the biological sample,
restricting the thickness of the specimen to be examined to less than 1 μm.
• The newly available phase plate technology for EM provides increased image contrast and
therefore, makes it easier to identify fine cellular components within thicker specimens in
situ (Dai et al., 2013, 2014).
• Phase plates are typically positioned in the back focal plane of the objective lens of the EM
and shift the phase of the scattered electron beam such that low-frequency information is
amplified.
• This is the information that contributes to image contrast, and higher contrast makes it
possible to detect structural features within the data and, therefore, allows for the direct
observation and analysis of the internal 3D structure of cells .
Phase plate image of neurons
E- A slice of a tomogram acquired with a phase plate showing an intracisternal filament
bundle within the cisternae of the trans-Golgi (yellow arrow) and a nearby coated bud.
An acidocalcisome containing a dense aggregate of polyphosphate filaments is labeled with
‘ac’. Scale bar is 100 nm
F- Segmentation of the cisterna in E, with the Golgi membrane in dark orange, the coated
bud in yellow and the filament bundle in blue.
Future of Cryo- ET
• Cryo-ET is establishing itself as an invaluable technique for structural
cellular biology. A big milestone for cryo-ET will be to routinely reach
subnanometer resolution.
• The future of cryo-ET lies in the routine observation of cellular
features of interest within their native environment, in combination
with other upcoming structural techniques such as CLEM(Correlative
Light Electron Microscopy) and FIB (Focused Ion Beam).
Thank you

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Recent Advances in microscopy

  • 1. Recent Advances in microscopy to view the ultrastructure of the cell Presented By Divya S- I Ph.D (GPB) 2019608004
  • 2. Scanning electron microscope • A SEM is a type of electron microscope that images a sample by scanning it with a by a high energy beam of electrons in a raster scan pattern • The electrons interact with the atoms that make up the sample producing the signals that contain the information about the samples surface topography, composition and other properties such as electrical conductivity
  • 3.
  • 4.
  • 5.
  • 6.
  • 7.
  • 8.
  • 9.
  • 10.
  • 11.
  • 12. Cryo-electron tomography (cryo-ET) • Electron microscopy (EM) has been pivotal in providing information about cellular ultrastructure, as well as macromolecular organization • Biological materials can be physically fixed by vitrification and imaged with cryo-electron tomography (cryo-ET) in a close-to-native condition • Using this technique, one can acquire three-dimensional (3D) information about the macromolecular architecture of cells, depict unique cellular states and reconstruct molecular networks
  • 13.
  • 14. Cellular tomography • Cellular processes, such as cell adhesion and mitosis, can be investigated by cryo-ET. This approach can also be used to observe the cytoskeleton (Kürner et al., 2004; Medalia et al., 2002, 2007). • Early studies of the actin cytoskeleton were mostly focused on morphological observations within the EM data. • With the recent advances in cryo-ET, we can now evaluate some filament properties within cells and even detect the helical pitch of individual actin filaments . This makes it possible to determine the polarity of each actin filament within the cytoskeletal network.
  • 15.
  • 16. Cellular tomography performed with phase plates • EM is mainly limited by how far electrons can penetrate through the biological sample, restricting the thickness of the specimen to be examined to less than 1 μm. • The newly available phase plate technology for EM provides increased image contrast and therefore, makes it easier to identify fine cellular components within thicker specimens in situ (Dai et al., 2013, 2014). • Phase plates are typically positioned in the back focal plane of the objective lens of the EM and shift the phase of the scattered electron beam such that low-frequency information is amplified. • This is the information that contributes to image contrast, and higher contrast makes it possible to detect structural features within the data and, therefore, allows for the direct observation and analysis of the internal 3D structure of cells .
  • 17. Phase plate image of neurons E- A slice of a tomogram acquired with a phase plate showing an intracisternal filament bundle within the cisternae of the trans-Golgi (yellow arrow) and a nearby coated bud. An acidocalcisome containing a dense aggregate of polyphosphate filaments is labeled with ‘ac’. Scale bar is 100 nm F- Segmentation of the cisterna in E, with the Golgi membrane in dark orange, the coated bud in yellow and the filament bundle in blue.
  • 18. Future of Cryo- ET • Cryo-ET is establishing itself as an invaluable technique for structural cellular biology. A big milestone for cryo-ET will be to routinely reach subnanometer resolution. • The future of cryo-ET lies in the routine observation of cellular features of interest within their native environment, in combination with other upcoming structural techniques such as CLEM(Correlative Light Electron Microscopy) and FIB (Focused Ion Beam).