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Biodegradation of petrochemicals 
KHUDA BAKHSH 
FA14-R02-002 
COMSATS ABBOTTABAD 
1
What are petrochemicals? 
• Chemicals derived from petroleum or natural gas 
• Major petrochemicals are acetylene, benzene, 
ethane, ethylene, methane, propane, and 
hydrogen 
• A huge variety of products are made with 
petrochemicals 
• Including plastics, soaps, pharmaceuticals, fertilizers, 
pesticides, detergents,
One of the major environmental problems 
caused by HCS: 
 Resulting from activities of petrochemical 
industry. 
Accidental releases of petroleum products 
HCS belong to the family of carcinogens and 
neurotoxic organic pollutants 
Main cause of water and soil pollution 
Accumulation of pollutants in living cells may 
cause death or mutations 
Their removal is necessary
Degradation of HCS 
• Several methods are utilized 
Chemical degradation 
Biodegradation 
 Biodegradation involve 
Microbial remediation( effective method) 
Bacterial degradation 
Fungal degradation 
Phytoremediation (by using plants)
Microbial Degradation of Petroleum 
Biodegradation of HCS is a complex process depending on: 
• the nature 
• Amount of the hydrocarbons present 
Petroleum HCS divided into four classes: 
• The alephatics 
• The aromatics 
• The asphaltenes (phenols, fatty acids, ketones, esters, and 
porphyrins), 
• And the resins (pyridines, quinolines, carbazoles, 
sulfoxides, and amides 
Cont…. 
Hydrocarbons
The susceptibility of HCS to microbes can be 
ranked: 
• Linear alkanes 
• Branched alkanes 
• Small aromatics cyclic alkanes 
• High molecular weight (PAHs) 
Cont…
Natural mechanism for degrading HCS: 
• by bacteria, yeast, and fungi 
• Mix population of these microbes are more 
efficient 
• Bacteria are the most active agents in 
petroleum degradation
Enzymes and microbes Participating in 
Degradation of HCS 
Enzymes Substrates Microorganisms References 
Soluble Methane 
Monooxygenases 
C1–C8 alkanes alkenes and 
cycloalkanes 
Methylococcus 
Methylomonas 
McDonald et 
al. 
Particulate Methane 
Monooxygenases 
C1–C5 (halogenated) alkanes 
and cycloalkanes 
Methylobacter 
Methylococcus 
McDonald et 
al. 
AlkB related 
Alkane 
Hydroxylases 
C5–C16 alkanes, fatty acids, 
alkyl benzenes, cycloalkanes 
Pseudomonas 
Burkholderia 
Rhodococcus 
Mycobacterium 
Jan et al. 
Eukaryotic P450 C10–C16 alkanes, fatty acids Candida maltosa 
Candida tropicalis 
Yarrowia lipolytica 
Iida et al 
Bacterial P450 
oxygenase system 
C5–C16 alkanes, cycloalkanes Caulobacter 
Mycobacterium 
Iida et al 
Dioxygenases C10–C30 alkanes Acinetobacter sp. Maeng et al
Mechanism of Petroleum HCS Degradation
• Biosynthesis of cell biomass occurs from the 
central precursor metabolites, for example, 
• acetyl-CoA, succinate, pyruvate. 
• Other mechanisms are 
• Attachment of microbial cells to the substrates 
• Production of biosurfactsants
Biodegradation of Petroleum compounds 
11 
Petroleum compounds are categorized into 2 groups 
• Aliphatic hydrocarbon e.g. alkane, alcohol, 
aldehyde 
• Aromatic hydrocarbon e.g. benzene, phenol, 
toluene, catechol 
• H.C. (substrate) + O2 H.C.-OH + H2O 
• H.C. (substrate) + O2 H.C. 
O 
H 
O 
H 
monooxyge 
nase 
dioxygenase
12 
Straight chain 
aliphatic H.C. 
compounds
Cyclic aliphatic 
13 
H.C. 
compounds
Aerobic degradation 
of aromatic compounds 
14
15
Anaerobic degradation 
Under nitrate-reducing bacteria 
Sulfate-reducing bacteria
• under nitrate-reducing condition : Nitrate-reducing 
17 
bacteria couple the oxidation of org. cpd. with 
water to the exergonic reduction of nitrate via 
nitrite to N2 
OH OH O 
Metabolic 
pool 
3H2 H2O 
H2 
COOH 
CH3
Factors Influencing Petroleum HCS 
Degradation 
A number of limiting factors affect the 
biodegradation of petroleum HCS 
• Chemistry of HCS 
• Physiological factors 
• Nutrients
• Temperature range.
conclusion 
• Cleaning up of petroleum HCS is a real world problem. 
• It depends on the indigenous microorganisms to transform or 
mineralize the organic contaminants. 
• Microbial degradation process aids the elimination of spilled 
oil from the environment after critical removal of large 
amounts of the oil by various physical and chemical methods. 
• This is possible because microorganisms have enzyme systems 
to degrade and utilize different hydrocarbons as a source of 
carbon and energy. 
• Therefore, based on the present review, it may be concluded 
that microbial degradation can be considered as a key 
component in the cleanup strategy for petroleum 
hydrocarbon remediation
biodegradation of hydrocarbons

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biodegradation of hydrocarbons

  • 1. Biodegradation of petrochemicals KHUDA BAKHSH FA14-R02-002 COMSATS ABBOTTABAD 1
  • 2. What are petrochemicals? • Chemicals derived from petroleum or natural gas • Major petrochemicals are acetylene, benzene, ethane, ethylene, methane, propane, and hydrogen • A huge variety of products are made with petrochemicals • Including plastics, soaps, pharmaceuticals, fertilizers, pesticides, detergents,
  • 3. One of the major environmental problems caused by HCS:  Resulting from activities of petrochemical industry. Accidental releases of petroleum products HCS belong to the family of carcinogens and neurotoxic organic pollutants Main cause of water and soil pollution Accumulation of pollutants in living cells may cause death or mutations Their removal is necessary
  • 4. Degradation of HCS • Several methods are utilized Chemical degradation Biodegradation  Biodegradation involve Microbial remediation( effective method) Bacterial degradation Fungal degradation Phytoremediation (by using plants)
  • 5. Microbial Degradation of Petroleum Biodegradation of HCS is a complex process depending on: • the nature • Amount of the hydrocarbons present Petroleum HCS divided into four classes: • The alephatics • The aromatics • The asphaltenes (phenols, fatty acids, ketones, esters, and porphyrins), • And the resins (pyridines, quinolines, carbazoles, sulfoxides, and amides Cont…. Hydrocarbons
  • 6. The susceptibility of HCS to microbes can be ranked: • Linear alkanes • Branched alkanes • Small aromatics cyclic alkanes • High molecular weight (PAHs) Cont…
  • 7. Natural mechanism for degrading HCS: • by bacteria, yeast, and fungi • Mix population of these microbes are more efficient • Bacteria are the most active agents in petroleum degradation
  • 8. Enzymes and microbes Participating in Degradation of HCS Enzymes Substrates Microorganisms References Soluble Methane Monooxygenases C1–C8 alkanes alkenes and cycloalkanes Methylococcus Methylomonas McDonald et al. Particulate Methane Monooxygenases C1–C5 (halogenated) alkanes and cycloalkanes Methylobacter Methylococcus McDonald et al. AlkB related Alkane Hydroxylases C5–C16 alkanes, fatty acids, alkyl benzenes, cycloalkanes Pseudomonas Burkholderia Rhodococcus Mycobacterium Jan et al. Eukaryotic P450 C10–C16 alkanes, fatty acids Candida maltosa Candida tropicalis Yarrowia lipolytica Iida et al Bacterial P450 oxygenase system C5–C16 alkanes, cycloalkanes Caulobacter Mycobacterium Iida et al Dioxygenases C10–C30 alkanes Acinetobacter sp. Maeng et al
  • 9. Mechanism of Petroleum HCS Degradation
  • 10. • Biosynthesis of cell biomass occurs from the central precursor metabolites, for example, • acetyl-CoA, succinate, pyruvate. • Other mechanisms are • Attachment of microbial cells to the substrates • Production of biosurfactsants
  • 11. Biodegradation of Petroleum compounds 11 Petroleum compounds are categorized into 2 groups • Aliphatic hydrocarbon e.g. alkane, alcohol, aldehyde • Aromatic hydrocarbon e.g. benzene, phenol, toluene, catechol • H.C. (substrate) + O2 H.C.-OH + H2O • H.C. (substrate) + O2 H.C. O H O H monooxyge nase dioxygenase
  • 12. 12 Straight chain aliphatic H.C. compounds
  • 13. Cyclic aliphatic 13 H.C. compounds
  • 14. Aerobic degradation of aromatic compounds 14
  • 15. 15
  • 16. Anaerobic degradation Under nitrate-reducing bacteria Sulfate-reducing bacteria
  • 17. • under nitrate-reducing condition : Nitrate-reducing 17 bacteria couple the oxidation of org. cpd. with water to the exergonic reduction of nitrate via nitrite to N2 OH OH O Metabolic pool 3H2 H2O H2 COOH CH3
  • 18. Factors Influencing Petroleum HCS Degradation A number of limiting factors affect the biodegradation of petroleum HCS • Chemistry of HCS • Physiological factors • Nutrients
  • 20. conclusion • Cleaning up of petroleum HCS is a real world problem. • It depends on the indigenous microorganisms to transform or mineralize the organic contaminants. • Microbial degradation process aids the elimination of spilled oil from the environment after critical removal of large amounts of the oil by various physical and chemical methods. • This is possible because microorganisms have enzyme systems to degrade and utilize different hydrocarbons as a source of carbon and energy. • Therefore, based on the present review, it may be concluded that microbial degradation can be considered as a key component in the cleanup strategy for petroleum hydrocarbon remediation