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GOOD MORNING
Shilpa.k
Microbiology Tutor
AIMSRC
Introduction
OBJECTIVES
–To impart sufficient basic science of
the medically important microbes to
assist you in diagnosing infectious
diseases.
–To impart sufficient clinical knowledge
to raise your index of suspicion for
infectious diseases.
WELCOME TO THE MICROBIAL WORLD
Microbiology
• Microbiology is the ‘biology of microscopic
organisms ’
Medical microbiology
Study of microbes that
cause disease in humans.
TYPES OF MICROBES
Microbes vary in shape, size and structure
and are categorized into,
1. Eukaryotic
2. Prokaryotic
Fungi and Parasites
Bacteria
A cellular (noncellular)
Viruses and prions are incapable
of independent life
Medical Microbiology comprises and
integrates the fields of immunology,
bacteriology, virology, mycology, and
parasitology, each of which has seen
considerable independent development
in the past few decades
IMMUNOLOGY
BACTERIOLOGY
MYCOLOGY
VIROLOGY
PARASITOLOGY
HISTORY
Antonie Philips van
Leeuwenhoek was a
Dutch tradesman and
scientist. He is
commonly known as
"the Father of
Microbiology", and
considered to be the
first microbiologist
Louis Pasteur was a French
chemist and microbiologist
renowned for his discoveries
of the principles of
vaccination, microbial
fermentation and
pasteurization.
”Father of Medical Microbiology"
German physician
and microbiologist.
The founder of
modern
bacteriology.
Robert Koch
• Isolation of Anthrax, Tuberculosis and cholera
• Isolating pure culture on solid media
• Koch's Postulates
When a microorganism was accepted as the
causative agent of infectious disease
1. The organism must always be present, in every
case of the disease.
2. The organism must be isolated and grown in pure
culture.
3. Samples of the organism taken from pure culture
must cause the same disease when inoculated into
a healthy, susceptible animal in the laboratory.
4. The same organism must be isolated again from
the inoculated animal.
• These postulates are still used today to confirm the
cause of an infectious disease
• Medical Microbiology comprises and integrates the
fields of immunology, bacteriology, virology,
mycology, and parasitology, each of which has seen
considerable independent development in the past
few decades.
• The common bond between them is the focus on the
causes of infectious diseases and on the reactions of
the host to the pathogens. Although the advent of
antibiotics and vaccines has certainly taken the dread
out of many infectious diseases, the threat of infection
is still a fact of life: New pathogens are constantly
being discovered; strains of „old“ ones have
developed resistance to antibiotics, making therapy
more and more difficult; incurable infectious diseases
(AIDS, rabies) are still with us.
Definitions and terms
• Infection is a generic term used to indicate invasion
of the host by a microorganism.
• Infection may be subclinical or asymptomatic when
the patient is unaware of the infection.
• Clinical infection is associated with the presence of
overt signs and symptoms of disease.
• The term ‘colonization’ should be restricted to the
presence of a microbe at an expected site.
• A pathogen is a microbe that potentially can cause
harm, i.e. tissue damage. An
• opportunistic pathogen is a microbe that causes
infection in patients with impaired immunity, e.g.
fungal infections in cancer patients.
Terminology
• Bacteria, fungi, protozoa, and helminths are named
according to the binomial Linnean system that uses
genus and species, but viruses are not so named.
• For example, regarding the name of the well-known
bacteria Escherichia coli, Escherichia is the genus and
coli is the species name. Similarly, the name of the
yeast Candida albicans consists of Candida as the
genus and albicans as the species.
• But viruses typically have a single name such as
poliovirus, measles virus, or rabies virus. Some viruses
have names with two words such as herpes simplex
virus, but those do not represent genus and species.
Clinical Microbiology
• Infection
• Nosocomial Infections
• Systemic Infections
General Bacteriology
• Morphology and Physiology
• Culture Media
• Culture Method
• Bacterial genetics
• Antimicrobial Agents and resistance
Systemic Bacteriology
Pathogenic organisms
Gram Positive – Cocci , Bacilli
Gram Negative – Cocci, Bacilli
Spirocheates
Mycoplasma, Chlamydiae and Rickettssiae
Immunology
Mycology
Virology
Parasitology
Medical Microbiology
MICROSCOPY
MICROSCOPY
• Microscope invented by Antony Van Leeuwenhoek in
17th century.
• Required for the morphological study of micro-
organisms.
• USES - to magnify the image.
- to achieve maximum resolution.
- to provide sufficient contrast for observation
Resolution : the extent to which details in the
magnified object are maintained.
Resolving Power (RP) : the smallest distance by
which 2 points can be separated and still be observed
as 2 distinct / different points.
RP (eye) – 200 µm
RP (visible light) – 300 nm
RP (electron microscope) – 0.1 nm
Types of Microscopes
• Optical or light microscope
- Simple
- Compound
• Phase contrast microscope
• Dark field (dark ground) microscope
• Fluorescent microscope
• Electron microscope
Optical (Light) Microscope
Optical (Light) Microscope
• Principle : when visible
light passes through the
specimen & then
through a series of
lenses, the light gets
reflected in such a
manner that it results in
magnification of the
organisms present in the
specimen.
• Magnification = objective x eyepiece
• To achieve maximum resolution with 1000x
magnification, oil immersion must be used
• Oil prevents dispersion of light after light passes
through the specimen.
• Images produced have very little contrast,
therefore dyes are used to stain the specimen.
Phase Contrast Microscope
• Improves the contrast
• Makes the structures within the cells evident that
differ in their thickness or refractive index.
• Also, differences in the refractive index of cell &
the surrounding medium make them clearly
visible.
Phase Contrast Microscope-Principle
• When beams of light
pass through the
specimen, it is
partially scattered by
the microbial cells or
cell structures.
Scattering depends on
the thickness/
refractive indices of
various structures
• High refractive index - more
scattering of light. A scattered light
also loses its velocity when travelling
through the object and is not in
phase with the unaltered light.
Therefore appears as dark spot
whereas the unobstructed light
appears as bright spot. These
differences in the intensity provide
light & dark contrast to the image.
Advantage : since staining is not
involved, live organisms can be
observed.
Dark Field (Ground) Microscope
• Specimens appear as bright images against a nearly black
background.
• Dark field condenser with a central circular stop – does
not allow light to directly fall on the specimen.
• Light passes only around the edges of the condenser.
• Light rays which hit the object in the specimen are
deflected upwards into the objective for visualization, rest
will not enter and give a dark background.
Spirochetes under dark ground
illumination
Uses of Dark Field microscopy
• Very useful in finding extremely small,
unstained and / or moving objects.
• Organelles like cilia, flagella, vacuoles and cell
nuclei can be clearly seen.
Fluorescent Microscope
• Microorganisms or tissue cells are stained with
dyes or compounds called fluorochromes.
• Examined under microscope with ultra – violet
radiation instead of visible light.
• They convert light of shorter (UV) wavelength into
visible light and so become luminous – Fluoresce.
• Wavelengths absorbed & emitted are specific for
specific fluorochromes.
Fluorochromes
• Acridine orange : Orange
• Auramine-Rhodamine : Yellow
• Calcofluor white : White
• Fluorescein Isothiocyanate (FITC) : Green
Modification of Fluorescent Microscope
• Immunofluorescence : Antibodies labeled
with fluorochrome used to specifically stain
a particular bacterial species.
• Uses of IF : viruses, direct examination of
C.trachomatis, B.pertussis
Electron Microscope
• Invented by Knoll & Ruska in 1936.
• Uses electrons in place of light.
• Electrons are focussed by electromagnetic
field.
• Image is formed on a fluorescent screen or is
taken on a photographic material.
• Resolving power is 100,000 times more than
light microscope.
Types of EM
• 2 types : Transmission EM ( TEM )
Scanning EM ( SEM )
SEM allows the study of cell surfaces with greater
contrast & higher resolution than TEM.
• Disadvantages : Only dead & dried objects can be
examined, since the medium is vacuum.
Cell morphology is distorted.
• Uses : for viruses, microbes less than 0.1 to 0.2.
Any Queries??????
Introduction to microbiology

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Introduction to microbiology

  • 3. OBJECTIVES –To impart sufficient basic science of the medically important microbes to assist you in diagnosing infectious diseases. –To impart sufficient clinical knowledge to raise your index of suspicion for infectious diseases.
  • 4. WELCOME TO THE MICROBIAL WORLD
  • 5. Microbiology • Microbiology is the ‘biology of microscopic organisms ’ Medical microbiology Study of microbes that cause disease in humans.
  • 6. TYPES OF MICROBES Microbes vary in shape, size and structure and are categorized into, 1. Eukaryotic 2. Prokaryotic Fungi and Parasites Bacteria
  • 7. A cellular (noncellular) Viruses and prions are incapable of independent life
  • 8. Medical Microbiology comprises and integrates the fields of immunology, bacteriology, virology, mycology, and parasitology, each of which has seen considerable independent development in the past few decades
  • 14. HISTORY Antonie Philips van Leeuwenhoek was a Dutch tradesman and scientist. He is commonly known as "the Father of Microbiology", and considered to be the first microbiologist Louis Pasteur was a French chemist and microbiologist renowned for his discoveries of the principles of vaccination, microbial fermentation and pasteurization. ”Father of Medical Microbiology" German physician and microbiologist. The founder of modern bacteriology.
  • 15. Robert Koch • Isolation of Anthrax, Tuberculosis and cholera • Isolating pure culture on solid media • Koch's Postulates When a microorganism was accepted as the causative agent of infectious disease
  • 16. 1. The organism must always be present, in every case of the disease. 2. The organism must be isolated and grown in pure culture. 3. Samples of the organism taken from pure culture must cause the same disease when inoculated into a healthy, susceptible animal in the laboratory. 4. The same organism must be isolated again from the inoculated animal. • These postulates are still used today to confirm the cause of an infectious disease
  • 17.
  • 18. • Medical Microbiology comprises and integrates the fields of immunology, bacteriology, virology, mycology, and parasitology, each of which has seen considerable independent development in the past few decades. • The common bond between them is the focus on the causes of infectious diseases and on the reactions of the host to the pathogens. Although the advent of antibiotics and vaccines has certainly taken the dread out of many infectious diseases, the threat of infection is still a fact of life: New pathogens are constantly being discovered; strains of „old“ ones have developed resistance to antibiotics, making therapy more and more difficult; incurable infectious diseases (AIDS, rabies) are still with us.
  • 19. Definitions and terms • Infection is a generic term used to indicate invasion of the host by a microorganism. • Infection may be subclinical or asymptomatic when the patient is unaware of the infection. • Clinical infection is associated with the presence of overt signs and symptoms of disease. • The term ‘colonization’ should be restricted to the presence of a microbe at an expected site. • A pathogen is a microbe that potentially can cause harm, i.e. tissue damage. An • opportunistic pathogen is a microbe that causes infection in patients with impaired immunity, e.g. fungal infections in cancer patients.
  • 20. Terminology • Bacteria, fungi, protozoa, and helminths are named according to the binomial Linnean system that uses genus and species, but viruses are not so named. • For example, regarding the name of the well-known bacteria Escherichia coli, Escherichia is the genus and coli is the species name. Similarly, the name of the yeast Candida albicans consists of Candida as the genus and albicans as the species. • But viruses typically have a single name such as poliovirus, measles virus, or rabies virus. Some viruses have names with two words such as herpes simplex virus, but those do not represent genus and species.
  • 21. Clinical Microbiology • Infection • Nosocomial Infections • Systemic Infections
  • 22. General Bacteriology • Morphology and Physiology • Culture Media • Culture Method • Bacterial genetics • Antimicrobial Agents and resistance
  • 23. Systemic Bacteriology Pathogenic organisms Gram Positive – Cocci , Bacilli Gram Negative – Cocci, Bacilli Spirocheates Mycoplasma, Chlamydiae and Rickettssiae
  • 25.
  • 27. MICROSCOPY • Microscope invented by Antony Van Leeuwenhoek in 17th century. • Required for the morphological study of micro- organisms. • USES - to magnify the image. - to achieve maximum resolution. - to provide sufficient contrast for observation
  • 28. Resolution : the extent to which details in the magnified object are maintained. Resolving Power (RP) : the smallest distance by which 2 points can be separated and still be observed as 2 distinct / different points. RP (eye) – 200 µm RP (visible light) – 300 nm RP (electron microscope) – 0.1 nm
  • 29. Types of Microscopes • Optical or light microscope - Simple - Compound • Phase contrast microscope • Dark field (dark ground) microscope • Fluorescent microscope • Electron microscope
  • 31. Optical (Light) Microscope • Principle : when visible light passes through the specimen & then through a series of lenses, the light gets reflected in such a manner that it results in magnification of the organisms present in the specimen.
  • 32. • Magnification = objective x eyepiece • To achieve maximum resolution with 1000x magnification, oil immersion must be used • Oil prevents dispersion of light after light passes through the specimen. • Images produced have very little contrast, therefore dyes are used to stain the specimen.
  • 33. Phase Contrast Microscope • Improves the contrast • Makes the structures within the cells evident that differ in their thickness or refractive index. • Also, differences in the refractive index of cell & the surrounding medium make them clearly visible.
  • 34. Phase Contrast Microscope-Principle • When beams of light pass through the specimen, it is partially scattered by the microbial cells or cell structures. Scattering depends on the thickness/ refractive indices of various structures
  • 35. • High refractive index - more scattering of light. A scattered light also loses its velocity when travelling through the object and is not in phase with the unaltered light. Therefore appears as dark spot whereas the unobstructed light appears as bright spot. These differences in the intensity provide light & dark contrast to the image. Advantage : since staining is not involved, live organisms can be observed.
  • 36. Dark Field (Ground) Microscope • Specimens appear as bright images against a nearly black background. • Dark field condenser with a central circular stop – does not allow light to directly fall on the specimen. • Light passes only around the edges of the condenser. • Light rays which hit the object in the specimen are deflected upwards into the objective for visualization, rest will not enter and give a dark background.
  • 37.
  • 38. Spirochetes under dark ground illumination
  • 39. Uses of Dark Field microscopy • Very useful in finding extremely small, unstained and / or moving objects. • Organelles like cilia, flagella, vacuoles and cell nuclei can be clearly seen.
  • 40. Fluorescent Microscope • Microorganisms or tissue cells are stained with dyes or compounds called fluorochromes. • Examined under microscope with ultra – violet radiation instead of visible light. • They convert light of shorter (UV) wavelength into visible light and so become luminous – Fluoresce. • Wavelengths absorbed & emitted are specific for specific fluorochromes.
  • 41. Fluorochromes • Acridine orange : Orange • Auramine-Rhodamine : Yellow • Calcofluor white : White • Fluorescein Isothiocyanate (FITC) : Green
  • 42. Modification of Fluorescent Microscope • Immunofluorescence : Antibodies labeled with fluorochrome used to specifically stain a particular bacterial species. • Uses of IF : viruses, direct examination of C.trachomatis, B.pertussis
  • 43. Electron Microscope • Invented by Knoll & Ruska in 1936. • Uses electrons in place of light. • Electrons are focussed by electromagnetic field. • Image is formed on a fluorescent screen or is taken on a photographic material. • Resolving power is 100,000 times more than light microscope.
  • 44. Types of EM • 2 types : Transmission EM ( TEM ) Scanning EM ( SEM ) SEM allows the study of cell surfaces with greater contrast & higher resolution than TEM. • Disadvantages : Only dead & dried objects can be examined, since the medium is vacuum. Cell morphology is distorted. • Uses : for viruses, microbes less than 0.1 to 0.2.