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Introduction To Microbiology
And
Classification Of Microorganisms
• Microbiology is the science that deals with
tiny organisms that can’t be seen by naked eye
• Micro = tiny, bio= alive, logy (logos-latin) = science
• In general we call this part of science : Microbiology
• Organisms called : Microorganisms or microbes- these microscopic
organisms
• Microorganisms also called “germs ( rapidly growing cell), viruses,
agents…” but not all cause disease and many more are useful or essential
for human life
• Microorganisms are widely distributed
in nature and some of them are beneficial
to man (saprophyte) and
some of them are harmful (pathogenic; cause diseases)
When microbes were identified ?
Leeuwenhoek’s microorganisms grouped into six
categories as follows:
Fungi
Protozoa
Algae
Bacteria
Archaea
Small animals
• Anton van Leeuwenhoek (1632-1723)
(Duch) was the first microbiologist and
the first person to observe bacteria
using a single-lens microscope
of his own design.
• He described live microorganisms that
he observed in teeth scrapings,
rain water and peppercorn infusions.
• What Causes Disease?
• Louis Pasteur (1822-1895) considered
• the father of Modern Microbiology
Developed a process( today known as
pasteurisation) to kill microbes.
Pasteurisation is accomplished by heating liquids
to 63-65 C for 30 minutes or 73-75 C for 15 seconds
• Contributed best in microbiology
• Sterilisation
• Hot Air oven
• Autoclave
• Antrax vaccine (coined the word)
• Rabbies vaccine
• Built the Pasteur institute
• Robert Koch ( 1843- 1910) German scientist,
was a pioneer in medical microbiology.
Examined colonies of Microorganisms.
• Formulated bacteriological techiques
• Staining methods
• Discovered Tuberculosis agent and Vibrio cholera
• Worked Anthrax
• He was awarded a Nobel prize in 1905
(Koch postulates) he set out criteria to test.
• Koch’s Experiments
• Simple staining techniques
• First photomicrograph of bacteria
• First photomicrograph of bacteria in diseased tissue
• Techniques for estimating CFU/ml
• Use of steam to sterilize media
• Use of Petri dishes
• Aseptic techniques
• Bacteria as distinct species
• Koch’s Postulates
• How Can We Prevent Infection and Disease?
• Ignaz Semmelweis 1840 advocated
Handwashing to prevent transmission of puerperal
Fever from one patient to another
• Lister’s antiseptic technique
• Nightingale and nursing
• Snow – infection control and epidemiology
• Jenner’s vaccine – field of immunology
• Ehrlich’s “magic bullets” – field of chemotherapy
• Joseph Lister 1860s, used a chemical
disinfectant to prevent surgical wound
infections after looking at Pasteur’s work
showing microbes are in the air,spoil,food,and
cause animal diseases
• Alexander Fleming, 1928 ,discovered the
first antibiotic.
He observed that Penicillium fungus made
an antibiotic, penicillin, that killed S.aureus.
• 1940s: Penicillin as tested clinically
and mass produced
Taxonomy: Naming, Classifying, and Identifying
Microorganisms
• Microbial nomenclature- naming microorganisms
• Taxonomy- classifying living things
• Identification- discovering and recording the traits
of organisms so they can be named and classified
Assigning Specific Names
• The binomial system of nomenclature
• The generic (genus) name followed
by the species name
• Generic part is capitalized, species is lowercase
• Both are italicized or underlined if italics aren’t available
• Staphylococcus aureus
Traditional Whittaker Classification
Five Kingdoms
Prokaryotae (Monera)
Protista
Fungae
Plantae
Animalia
Based on:
Morphology
Metabolism (Biochemical Activity)
Molecular Techniques
Fatty Acid Profiles
Protein Differentiation
DNA Finger Printing
Cellular Organization
Prokaryotic Eukaryotic
• Fungi
• Eukaryotic (have membrane-bound nucleus)
• Obtain food from other organisms
• Possess cell walls
• Composed of
• Molds – multicellular; have hyphae;
reproduce by sexual and asexual spores
• Yeasts – unicellular; reproduce asexually
by budding; some produce sexual spores
• Protozoa
• Single-celled eukaryotes
• Similar to animals in nutrient needs and
cellular structure
• Live freely in water; some live in animal hosts
• Asexual (most) and sexual reproduction
• Most are capable of locomotion
They have
• Pseudopodia – cell extensions that flow
in direction of travel
• Cilia – numerous, short, hair-like protrusions
that propel organisms through environment
• Flagella – extensions of a cell that are
fewer,longer, and more whiplike than cilia
• Algae
• Unicellular or multicellular
• Photosynthetic
• Simple reproductive structures
• Categorized on the basis of pigmentation,
storage products, and composition of cell wall
• Bacteria and Archaea
• Unicellular and lack nuclei
• Much smaller than eukaryotes
• Found everywhere there is sufficient moisture;
some found in extreme environments
• Reproduce asexually
• Two kinds
• Bacteria – cell walls contain peptidoglycan; some lack cell walls; most
do not cause disease and some are beneficial
• Archaea – cell walls composed of polymers other than peptidoglycan
• Viruses
• Not independently living cellular organisms
• Much simpler than cells- basically a small
amount of DNA or RNA wrapped in
protein and sometimes by a lipid membrane
• Individuals are called a virus particle or virion
• Depend on the infected cell’s machinery to multiply and disperse
The Modern Age of Microbiology
• How Do Genes Work?
• Microbial genetics
• Molecular biology
• Recombinant DNA technology
• Gene therapy
• Recombinant DNA Technology
• Genes in microbes, plants, and animals
manipulated for practical applications
• Production of human blood-clotting
factor by E. coli to aid hemophiliacs
• Gene Therapy
• Inserting a missing gene or repairing a
defective one in humans by inserting
desired gene into host cells
• What Will the Future Hold?
• Microbiology is built on asking and answering questions
• The more questions we answer, the more questions
we have
Worldwide Infectious Diseases Affecting Health Sciences
• Increasing number of drug resistant strains including Nosocomial and
Community Acquired microorganisms
• MRSA Methicillin Resistant Staphylococcus aureus
• VRE Vancomycin Resistant Enterococcus
• VRSA Vancomycin Resistant Staphylococcus aureus
• MDR-TB Multidrug Resistant Tuberculosis
• Increasing number of emerging diseases (SARS, AIDS, hepatitis C, viral
encephalitis)
• Other diseases previously not linked to microorganisms now are (gastric
ulcers, certain cancers, multiple sclerosis)
• References
• Medical Microbiology, Murray,Rosenthal,Pfaller (Eds), 8th edition,
Elsevier, 2016
• Mims’ Medical Microbiology,
Goering,Dockrell,Zuckerman,Roitt,Chiodini (Eds), 5th edition Elsevier,
2014
• https://www.slideshare.net/doctortvrao/medical-
microbiologyrevisiting-the-history-by-drtvrao-md-medical-microbiology
• https://www.austincc.edu › materials › unit1 › Int...
• http://opencourses.emu.edu.tr/course/view.php?id=158

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Introduction to Microbiology and Classification of Microorganisms.pptx

  • 2. • Microbiology is the science that deals with tiny organisms that can’t be seen by naked eye • Micro = tiny, bio= alive, logy (logos-latin) = science
  • 3. • In general we call this part of science : Microbiology • Organisms called : Microorganisms or microbes- these microscopic organisms • Microorganisms also called “germs ( rapidly growing cell), viruses, agents…” but not all cause disease and many more are useful or essential for human life • Microorganisms are widely distributed in nature and some of them are beneficial to man (saprophyte) and some of them are harmful (pathogenic; cause diseases)
  • 4. When microbes were identified ? Leeuwenhoek’s microorganisms grouped into six categories as follows: Fungi Protozoa Algae Bacteria Archaea Small animals
  • 5.
  • 6. • Anton van Leeuwenhoek (1632-1723) (Duch) was the first microbiologist and the first person to observe bacteria using a single-lens microscope of his own design. • He described live microorganisms that he observed in teeth scrapings, rain water and peppercorn infusions.
  • 7. • What Causes Disease? • Louis Pasteur (1822-1895) considered • the father of Modern Microbiology Developed a process( today known as pasteurisation) to kill microbes. Pasteurisation is accomplished by heating liquids to 63-65 C for 30 minutes or 73-75 C for 15 seconds • Contributed best in microbiology • Sterilisation • Hot Air oven • Autoclave • Antrax vaccine (coined the word) • Rabbies vaccine • Built the Pasteur institute
  • 8. • Robert Koch ( 1843- 1910) German scientist, was a pioneer in medical microbiology. Examined colonies of Microorganisms. • Formulated bacteriological techiques • Staining methods • Discovered Tuberculosis agent and Vibrio cholera • Worked Anthrax • He was awarded a Nobel prize in 1905 (Koch postulates) he set out criteria to test.
  • 9. • Koch’s Experiments • Simple staining techniques • First photomicrograph of bacteria • First photomicrograph of bacteria in diseased tissue • Techniques for estimating CFU/ml • Use of steam to sterilize media • Use of Petri dishes • Aseptic techniques • Bacteria as distinct species • Koch’s Postulates
  • 10.
  • 11.
  • 12. • How Can We Prevent Infection and Disease? • Ignaz Semmelweis 1840 advocated Handwashing to prevent transmission of puerperal Fever from one patient to another • Lister’s antiseptic technique • Nightingale and nursing • Snow – infection control and epidemiology • Jenner’s vaccine – field of immunology • Ehrlich’s “magic bullets” – field of chemotherapy
  • 13. • Joseph Lister 1860s, used a chemical disinfectant to prevent surgical wound infections after looking at Pasteur’s work showing microbes are in the air,spoil,food,and cause animal diseases
  • 14.
  • 15. • Alexander Fleming, 1928 ,discovered the first antibiotic. He observed that Penicillium fungus made an antibiotic, penicillin, that killed S.aureus. • 1940s: Penicillin as tested clinically and mass produced
  • 16.
  • 17.
  • 18.
  • 19.
  • 20. Taxonomy: Naming, Classifying, and Identifying Microorganisms • Microbial nomenclature- naming microorganisms • Taxonomy- classifying living things • Identification- discovering and recording the traits of organisms so they can be named and classified
  • 21. Assigning Specific Names • The binomial system of nomenclature • The generic (genus) name followed by the species name • Generic part is capitalized, species is lowercase • Both are italicized or underlined if italics aren’t available • Staphylococcus aureus
  • 22. Traditional Whittaker Classification Five Kingdoms Prokaryotae (Monera) Protista Fungae Plantae Animalia Based on: Morphology Metabolism (Biochemical Activity) Molecular Techniques Fatty Acid Profiles Protein Differentiation DNA Finger Printing
  • 23.
  • 25.
  • 26.
  • 27. • Fungi • Eukaryotic (have membrane-bound nucleus) • Obtain food from other organisms • Possess cell walls • Composed of • Molds – multicellular; have hyphae; reproduce by sexual and asexual spores • Yeasts – unicellular; reproduce asexually by budding; some produce sexual spores
  • 28. • Protozoa • Single-celled eukaryotes • Similar to animals in nutrient needs and cellular structure • Live freely in water; some live in animal hosts • Asexual (most) and sexual reproduction • Most are capable of locomotion
  • 29. They have • Pseudopodia – cell extensions that flow in direction of travel • Cilia – numerous, short, hair-like protrusions that propel organisms through environment • Flagella – extensions of a cell that are fewer,longer, and more whiplike than cilia
  • 30. • Algae • Unicellular or multicellular • Photosynthetic • Simple reproductive structures • Categorized on the basis of pigmentation, storage products, and composition of cell wall
  • 31. • Bacteria and Archaea • Unicellular and lack nuclei • Much smaller than eukaryotes • Found everywhere there is sufficient moisture; some found in extreme environments • Reproduce asexually • Two kinds • Bacteria – cell walls contain peptidoglycan; some lack cell walls; most do not cause disease and some are beneficial • Archaea – cell walls composed of polymers other than peptidoglycan
  • 32. • Viruses • Not independently living cellular organisms • Much simpler than cells- basically a small amount of DNA or RNA wrapped in protein and sometimes by a lipid membrane • Individuals are called a virus particle or virion • Depend on the infected cell’s machinery to multiply and disperse
  • 33.
  • 34.
  • 35.
  • 36.
  • 37. The Modern Age of Microbiology • How Do Genes Work? • Microbial genetics • Molecular biology • Recombinant DNA technology • Gene therapy
  • 38. • Recombinant DNA Technology • Genes in microbes, plants, and animals manipulated for practical applications • Production of human blood-clotting factor by E. coli to aid hemophiliacs • Gene Therapy • Inserting a missing gene or repairing a defective one in humans by inserting desired gene into host cells
  • 39. • What Will the Future Hold? • Microbiology is built on asking and answering questions • The more questions we answer, the more questions we have
  • 40. Worldwide Infectious Diseases Affecting Health Sciences • Increasing number of drug resistant strains including Nosocomial and Community Acquired microorganisms • MRSA Methicillin Resistant Staphylococcus aureus • VRE Vancomycin Resistant Enterococcus • VRSA Vancomycin Resistant Staphylococcus aureus • MDR-TB Multidrug Resistant Tuberculosis
  • 41. • Increasing number of emerging diseases (SARS, AIDS, hepatitis C, viral encephalitis) • Other diseases previously not linked to microorganisms now are (gastric ulcers, certain cancers, multiple sclerosis)
  • 42.
  • 43.
  • 44.
  • 45.
  • 46.
  • 47.
  • 48.
  • 49.
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  • 52.
  • 53. • References • Medical Microbiology, Murray,Rosenthal,Pfaller (Eds), 8th edition, Elsevier, 2016 • Mims’ Medical Microbiology, Goering,Dockrell,Zuckerman,Roitt,Chiodini (Eds), 5th edition Elsevier, 2014 • https://www.slideshare.net/doctortvrao/medical- microbiologyrevisiting-the-history-by-drtvrao-md-medical-microbiology • https://www.austincc.edu › materials › unit1 › Int... • http://opencourses.emu.edu.tr/course/view.php?id=158