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What Am I
Looking At?
Brain image
Skull is
white
CT
Skull is not
white
CSF
white
T2 ADC
Black
T1 FLAIR DIFFUSION
Grey
Proton
density
Graident
echo
MRI
Black
Air
CSF
Fat
White
Bone
Calcium
Blood
Black
Air
CSF
Fat
White
Bone
Calcium
Blood
Brain image
Skull is
white
CT
Skull is not
white
CSF
white
T2 ADC
Black
T1 FLAIR DIFFUSION
Grey
Proton
density
Graident
echo
MRI
Brain image
Skull is
white
CT
Skull is not
white
CSF
white
T2 ADC
Black
T1 FLAIR DIFFUSION
Grey
Proton
density
Graident
echo
MRI
Bright signal on T1
Contrast
Gadolinium
Hemorrhage
Methemoglobin
Fat
Lipoma
Dermoid
Protein
Cysts of
endodermal
origin
Minerals
Immature
calcification
Copper
Manganese
Hemorrhage
Hemorrhage
Epi-dural
Hemorrhage
Epi-dural Sub-dural
Hemorrhage
Epi-dural Sub-dural
Sub-
arachnoid
Hemorrhage
Epi-dural Sub-dural
Sub-
arachnoid
Intra-
cerebral
Fat
Fat
Pericallosal
lipoma
Ruptured
dermoid cyst
Intracranial cysts of
endodermal origin
Intracranial cysts of
endodermal origin
Colloid cyst
Rathke’s cleft
cyst
Neuroenteric
cyst
Mineral
Calcium
Causes of
intracranial
calcification
Manganese
Chronic hepatic
encephalopathy
Copper Wilson disease
Intra-
cranial
calcification
Physiologic
Congenital Phakomatoses
TS
SW
VHL
Infection
Congenital TORCH
Acquired
TB
NCCGliosis
Metabolic
Hyper-parathyroidism
Hypo-parathyroidism
Fahr
Tumor
Intraaxial Oligodendroglioma
Extra-axial
Meningioma
Craniophyrngioma
Intraventricular
Ependymoma
Neurocytoma
Vascular
Atherosclerosis
AVM
Aneurysm
Post-irradiation Mineralizing MA
Hyper-
parathyroidism
TORCH
Central
neurocytoma
MeningiomaCranio-
pharyngioma
EpendymomaSub-
ependymoma
Oligodendro
-glioma
Cavernous
malformation
Mineralizing
microangiopathy
Brain image
Skull is
white
CT
Skull is not
white
CSF
white
T2 ADC
Black
T1 FLAIR DIFFUSION
Grey
Proton
density
Graident
echo
MRI
T2
• Brain edema.
• Encephalomalacia / gliosis.
• Demyelination plaques (posterior fossa).
Brain
edema
Cyto-toxic Vaso-genic Interstitial
Enephalomalacia vs gliosis
Low signal on T2
Contrast
(Perfusion)
Gadolinium
Hemorrhage
De-oxy
hemoglobin
Intracellular
methemoglobin
Protein
Cysts of
endodermal
origin
Minerals
Calcification
Iron
Black hole effect
Intra-cystic nodule of low signal
Calcification
Acute intracerebral hematoma
de-oxy hemoblobin
Brain image
Skull is
white
CT
Skull is not
white
CSF
white
T2 ADC
Black
T1 FLAIR DIFFUSION
Grey
Proton
density
Graident
echo
MRI
FLAIR
• Brain edema.
• Gliosis.
• Demyelination plaques.
• Subarachnoid hemorrhage.
Brain
edema
Cyto-toxic Vaso-genic Interstitial
Cytotoxic Vasogenic Interstitial
Intra-cellular edema Extra-cellular edema Trans-ependymal CSF
permeation
Pathogenesis Na / k pump failure Disrupted BBB increased intraventricular
pressure
Causes Infarction. Infarction.
Tumor.
Infection.
PRESS.
Hydrocephalus
Location Grey and white matter White matter Periventricular white matter
T2 Loss of
cortiomedullary
differentiation
Finger like Periventricular rim.
Diffusion Restriction No restriction No restriction
Subarachnoid hemorrhage
MS
Gliosis
• Periventricular leukomalacia.
Gliosis
• Neuro-epithelial cyst Vs Porencephalic cyst
Gliosis
Lacunar infarct vs Virchow Robin space
Disadvantages of FLAIR
• CSF flow artifact.
• False negative FLAIR.
CSF flow artifact
False negative FLAIR
T1 T2 FLAIR
Brain image
Skull is
white
CT
Skull is not
white
CSF
white
T2 ADC
Black
T1 FLAIR DIFFUSION
Grey
Proton
density
Graident
echo
MRI
Brain image
Skull is
white
CT
Skull is not
white
CSF
white
T2 ADC
Black
T1 FLAIR DIFFUSION
Grey
Proton
density
Graident
echo
MRI
Detection of MS plaques
• PD is the king under tentorium.
Brain image
Skull is
white
CT
Skull is not
white
CSF
white
T2 ADC
Black
T1 FLAIR DIFFUSION
Grey
Proton
density
Graident
echo
MRI
Brain image
Skull is
white
CT
Skull is not
white
CSF
white
T2 ADC
Black
T1 FLAIR DIFFUSION
Grey
Proton
density
Graident
echo
MRI
Gradient T2* WIS
Sensitive to de-oxy hemoblobin and
hemosiderin because of their susceptibility
effects.
• Cavernous malformations.
• Amyloid angiopathy.
• Post-radiation capillary telangiectasia.
Cavernous malformations
Post-radiation capillary telangiectasia
Disadvantages of Gradient T2WIs
• Blooming artifact.
Blooming artifact
• Obscure adjacent smaller lesions
Brain image
Skull is
white
CT
Skull is not
white
CSF
white
T2 ADC
Black
T1 FLAIR DIFFUSION
Grey
Proton
density
Graident
echo
MRI
Brain image
Skull is
white
CT
Skull is not
white
CSF
white
T2 ADC
Black
T1 FLAIR DIFFUSION
Grey
Proton
density
Graident
echo
MRI
Diffusion
Detection of
Hyper-acute infarct
Diffuse axonal injury
Differentiation
between
Acute lacunar infarct
chronic lacunar
infarct
Active demyelination
plaque
non active
demyelination
plaque
Abscess metastasis
Subdural empyema subdural effusion
Lymphoma glioma
Recurrent
cholesteatoma
Postoperative
scarring tissue
Ependymoma Medulloblastoma
Arachnoid Epidermoid
Hyper-acute
stroke
• FLAIR / Diffusion
mismatch
Diffuse axonal injury
Acute vs chronic lacunar infarcts
Active demyelination plaque
Abscess vs metastasis
• High viscosity of pus  restricted diffusion
Arachnoid vs epidermoid
Glioma vs lymphoma
Recurrent cholesteatoma vs
post-operative scarring tissue
Subdural empyema vs subdural effusion
Ependymoma vs medulloblastoma
Diffusion artifacts
• T2 shine through effect.
• Anisotropic diffusion.
T2 Shine through artifact
Restricted diffusion vs T2 shine through
T2 DWI
• B0
DWI
• B500
DWI
• B1000
ADC
Anisotropic diffusion
Advanced MRI techniques
• MR spectroscopy.
• MR perfusion.
• DTI
• Tractography.
What is MRS?
• It is an MRI technique whereby the echo that
is obtained from the body is analyzed into its
various radio-frequency components rather
than making an image.
Echo Analysis
ECHO
MRI
MRS
Suppression Techniques
Water
Metabolites
CHESS = Chemical Shift Suppression.
WEFT = Water Elimination Fourier Transform Tech.
I.R Pulses to null water signal prior to spectroscopy
•Water is 100,000 X than metabolites.
•Fat is 10,000 X than metabolites.
………need suppression……….
Requirements
• High Field.
• 1.5 T & 3T.
• High Homogeneity
• Less than 0.2 p.p.m
• Assessed by measuring the water peak width.
Metabolites
• NAA: Neuronal marker. (2.0 ppm)
– Neuronal marker
– Any neuronal loss…….decrease
NAA.
• Choline: Cell membrane. (3.2 ppm)
High cellularity & membrane turn-
over…increase Choline.
• Creatine: energy marker. (3.0 ppm)
Metabolites
• Lactate: Cell death. (1.3 ppm)
– Necrosis & hypoxia (anaerobic glycolysis) …increase Lactate.
• Lipid: (1.3-1.5 ppm)
– Necrosis
• Myo-Inositol: (3.5 ppm)
– Decreases in High grade malignancy
Single vs. Multi-Voxel Spectroscopy
Single Voxel Multi Voxel
•2X2X2 cm cube
•Short TE (STEAM)
•TE=30-35 msec
•All Metabolites
•Lesion = 60-80%
•2X2X2 cm cube
•2-3mm inner cubes
•Long TE (PRESS)
•TE=135-260 msec
•Major Metabolites
•Margin outline
MRS
Infant Adult
MRS for 6 days
Tumour
NAA
Choline
Cr
•Increased Choline
•Increased Cho:Cr
Multi-voxel allows comparison with normal tissue.
MRS of an abscess
MRS
• Apart from Tumors, Necrosis and Infections
ARE THERE ANY OTHER APPLICATIONS FOR
MRS?
TLE
TLE
•Lateralization:
•Decrease NAA
•Increased Choline (15%)
Canavan disease
MR perfusion
MR perfusion
Exogenous tracer
technique
Dynmaic
susceptibility
contrast imgaging
(DSC)
Dynamic contrast
enhanced imaging
(DCE)
Endogeneous
tracer technique
Arterial spin
labeled imaging
MR perfusion
CBV color map Time signal intensity curve
MR perfusion
Value Defined as Measured in
Cerebral blood volume Volume of blood in a given region of
brain tissue
milliliters per 100 g of
brain tissue
Cerbral blood flow Volume of blood per unit time passing
through a given region of brain tissue
milliliter per minute per
100 g of brain tissue
Mean transit time Average time it takes blood to pass
through a given region of brain tissue
Seconds
Stroke penumbra
• Penumbra = perfusion / diffusion mismatch 
thrombolytic therapy
Diffusion/perfusion mismatch
Diffusion/perfusion match
Post-radiation necrosis vs recurrent neoplasm
Diffusion tensor imaging
• MRI technique that uses anisotropic
diffusion to estimate the axonal (white
matter) organization of the brain
Fiber tractography (FT)
• is a 3D reconstruction technique to
access neural tracts using data collected by
DTI.
Color coding of fiber tractography
Red Commisural fibers Right  left hemisphere
Blue Projection fibers Cortex  subcortical grey matter
Green Association fibers Cortex  cortex
Projection fibers
Long
projection fibers
Cortico-spinal
Cortico-bulbar
Cortico-pontine
Cortico-reticular
Short
projection fibers
Thalamic radiation
(thalamo-cortical)
Anterior thalamic
radiatation
Anterior limb of
internal capsule
Superior thalamic
radiation
Posterior limb of
internal capsule
Posterior thalamic
radiation
Retrolental portion
of internal capsule
Association fibers
Long
(inter-lobar)
SLF
ILF
SFO
IFO
Cingulate
Uncinate
Fornix
Short
Intra-lobar (U shaped)
Superior longitudinal
fasciculus
Inferior longitudinal
fasciculus
Superior fronto-occipital
fasciculus
Inferior fronto-occipital
fasciculus
Cingulate fasciculus
Corpus callosum
Anisotropic diffusion
directional dependence of diffusivisity
• Diffusion of water molecules within white
matter axons is more free along the axons
than across the axons.
• Because the myeline sheath act as barrier
Fractional anisotropy map
(combines water mollecular diffusion with direction)
White matter white free diffusion along specific direction anisotropy
Grey matter dark free diffusion along all directions isotropy
Demyelination plaque
(white matter destruction)
dark free diffusion along all direction isotropy
Fractional anisotropy map
(combines water mollecular diffusion with direction)
White matter white free diffusion along specific direction anisotropy
Grey matter dark free diffusion along all directions isotropy
Demyelination plaque
(white matter destruction)
dark free diffusion along all direction isotropy
ADC and FA values
• FAWM = far normal appearing white matter
• NAWM = near normal appearing white matter
Fractional anisotropy map
(combines water mollecular diffusion with direction)
• White matter  white  free diffusion along
specific direction (anisotropy).
• Grey matter  dark free diffusion along all
directions. (isotropy).
Tractography
• Forceps minor
• fronto-occipital
fasciculus
• Disruption of the
white matter fibers
at the site of the
plaque.

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