Post-transcriptional modification or co-transcriptional modification is a set of biological processes common to most eukaryotic cells by which an RNA primary transcript is chemically altered following transcription from a gene to produce a mature, functional RNA molecule
Post-transcriptional modification or co-transcriptional modification is a set of biological processes common to most eukaryotic cells by which an RNA primary transcript is chemically altered following transcription from a gene to produce a mature, functional RNA molecule
Lecture 1 part.1 Structure and Function of Nucleic AcidDrQuratulAin5
This presentation is the part of Molecular Biology and Genetic course that would describe you about structure and function of nucleic acid and there types
Introduction
Definition
History
central dogma
Major components
mRNA,tRNA,rRNA
Energy source
Amino acids
Protien factor
Enzymes
Inorganic ions
Step involves in translation:
Aminoacylation of tRNA
Initiation
Elongation
termination
Importance of translation
Conclusion
Reference
Eukaryotic transcription is the elaborate process that eukaryotic cells use to copy genetic information stored in DNA into units of RNA replica.- Source: Wikipedia
All eukaryotes have at least three different RNA polymerase (Pol I, II,and III; and plants have a Pol IV & a Pol V). In addition, whereas bacteria require only one additional initiation factor (σ), several initiation factors are required for efficient and promoter-specific initiation in eukaryotes. These are called the general transcription factors (GTFs)
It is a short and concise slide about DNA replication and Repair. It is prepared keeping in mind for Undergraduates level but PG also might find it handy.
REGULATION OF
GENE EXPRESSION
IN PROKARYOTES & EUKARYOTES .
This presentation is enriched with lots of information of gene expression with many pictures so that anyone can understand gene expression easily.
Gene expression is the process by which the information encoded in a gene is used to direct the assembly of a protein molecule.
Gene expression is explored through a study of protein structure and function, transcription and translation, differentiation and stem cells.
It is the process by which information from a gene is used in the synthesis of a functional gene product.
These products are often proteins, but in non-protein coding genes such as ribosomal RNA (rRNA), transfer RNA (tRNA) or small nuclear RNA (snRNA) genes, the product is a functional RNA.
The process of gene expression is used by all known life - eukaryotes (including multicellular organisms), prokaryotes (bacteria and archaea)
Regulation of gene expression:
Regulation of gene expression includes a wide range of mechanisms that are used by cells to increase or decrease the production of specific gene products (protein or RNA).
Gene regulation is essential for viruses, prokaryotes and eukaryotes as it increases the versatility and adaptability of an organism by allowing the cell to express protein when needed.
CLASSIFICATION OF GENE WITH RESPECT TO THEIR EXPRESSION:
Constitutive ( house keeping) genes:
Are expressed at a fixed rate, irrespective to the cell condition.
Their structure is simpler.
Controllable genes:
Are expressed only as needed. Their amount may increase or decrease with respect to their basal level in different condition.
Their structure is relatively complicated with some response elements.
TYPES OF REGULATION OF GENE:
positive & negative regulation.
Steps involving gene regulation of prokaryotes & eukaryotes.
Operon-structure,classification of mechanisms- lac operon,tryptophan operon ,
and many things related to gene expression.
This is a video slide so anyone can understand this topic easily by seeing pictures included in this slide.
Lecture 1 part.1 Structure and Function of Nucleic AcidDrQuratulAin5
This presentation is the part of Molecular Biology and Genetic course that would describe you about structure and function of nucleic acid and there types
Introduction
Definition
History
central dogma
Major components
mRNA,tRNA,rRNA
Energy source
Amino acids
Protien factor
Enzymes
Inorganic ions
Step involves in translation:
Aminoacylation of tRNA
Initiation
Elongation
termination
Importance of translation
Conclusion
Reference
Eukaryotic transcription is the elaborate process that eukaryotic cells use to copy genetic information stored in DNA into units of RNA replica.- Source: Wikipedia
All eukaryotes have at least three different RNA polymerase (Pol I, II,and III; and plants have a Pol IV & a Pol V). In addition, whereas bacteria require only one additional initiation factor (σ), several initiation factors are required for efficient and promoter-specific initiation in eukaryotes. These are called the general transcription factors (GTFs)
It is a short and concise slide about DNA replication and Repair. It is prepared keeping in mind for Undergraduates level but PG also might find it handy.
REGULATION OF
GENE EXPRESSION
IN PROKARYOTES & EUKARYOTES .
This presentation is enriched with lots of information of gene expression with many pictures so that anyone can understand gene expression easily.
Gene expression is the process by which the information encoded in a gene is used to direct the assembly of a protein molecule.
Gene expression is explored through a study of protein structure and function, transcription and translation, differentiation and stem cells.
It is the process by which information from a gene is used in the synthesis of a functional gene product.
These products are often proteins, but in non-protein coding genes such as ribosomal RNA (rRNA), transfer RNA (tRNA) or small nuclear RNA (snRNA) genes, the product is a functional RNA.
The process of gene expression is used by all known life - eukaryotes (including multicellular organisms), prokaryotes (bacteria and archaea)
Regulation of gene expression:
Regulation of gene expression includes a wide range of mechanisms that are used by cells to increase or decrease the production of specific gene products (protein or RNA).
Gene regulation is essential for viruses, prokaryotes and eukaryotes as it increases the versatility and adaptability of an organism by allowing the cell to express protein when needed.
CLASSIFICATION OF GENE WITH RESPECT TO THEIR EXPRESSION:
Constitutive ( house keeping) genes:
Are expressed at a fixed rate, irrespective to the cell condition.
Their structure is simpler.
Controllable genes:
Are expressed only as needed. Their amount may increase or decrease with respect to their basal level in different condition.
Their structure is relatively complicated with some response elements.
TYPES OF REGULATION OF GENE:
positive & negative regulation.
Steps involving gene regulation of prokaryotes & eukaryotes.
Operon-structure,classification of mechanisms- lac operon,tryptophan operon ,
and many things related to gene expression.
This is a video slide so anyone can understand this topic easily by seeing pictures included in this slide.
The slide presenting the Importance of genetic code and discusses how does the genetic code deduced that brings in the entire understanding of Genetic today.
I am a IB HL Biology Student. Our teacher asks students to give lectures, I gave my lecture on Transcription and Translation. Please read through slide notes, should be quite helpful. Also contains some past paper questions.
Alcohol induced metabolic alterations - A Case based discussionNamrata Chhabra
I shall proceed through a case based discussion and highlight a few of the metabolic alterations that have been found in the patient under study and of course these are the commonest metabolic alterations that change the whole scenario.
The objective of my discussion is to provide you with a solid foundation of alcohol induced metabolic alterations. The knowledge thus acquired will help you to make spontaneous diagnosis and plan the relevant treatment in the clinical settings.
The case details are with you. There are 3 questions related to the problems the patient is having in this case, and there are 4 options for each of the questions. Using your prior knowledge, try to select the most appropriate answer, you have only one minute to solve the answer.
it describes transcription with simple diagram and animation. its steps and inhibitors are described for both eukaryotes and prokaryotes. it will be easily understood by UG students . post transcriptional modification of all the RNA are also described with diagrams.
Brief Concepts and Questions EXAM 2 Chapter 8 DNA RNA Protein What i.pdfmckenziecast21211
Brief Concepts and Questions EXAM 2 Chapter 8: DNA RNA Protein What is DNA? a
phosphate Structure of DNA: Building blocks are called nucleotides Each nucleotide is
composed of three br uithofenas bee. What makes DNA so special? Provide 4 reasons, below
DNA DNA (Replication): Where does DNA replication take place? When does DNA replication
take place? Explain steps involved in DNA replication: DNA RNA Protein (Gene Expression)
Involves 2 processes: 1. Transcription 2. Translation Explain the Synthesis of Proteins (Gene
Expression): o DNA RNA Protein What is RNA? What is \"codon What is \"anticodon\" What is
a protein molecule? DNA mutation; Change in nucleotide bases of DNA Duplex Point mutation
Frame shift mutation
Solution
Question
Answer
Where does DNA replication take place:
It takes place in the nucleus in case of eukaryotic cells and in the cytoplasm in case of
prokaryotic cells
When does DNA replication take place:
DNA replication occurs during the S-phase during cell cycle, so that cell can make an extra copy
of genetic material.
Explain steps involved in DNA replication:
Initiation: During initiation, the proteins will bind to the origin of replication; helicase unwinds
the DNA helix which results in the formation of two replication forks.
Elongation: A RNA primer sequence will be added to this the DNA pol III will add the
nucleotides in 5’ to 3’ direction and chain will elongate.
Termination: In case of bacteria, termination of replication occurs whenever two replication
forks meet each other from the opposite end of the parental chromosome.
Transcription
Gene expression first step is transcription, here a particular segment of DNA will be copied into
RNA with the help of the enzyme RNA polymerase
Translation
Translation is the final step of the gene expression. Here mRNA will be used to synthesize the
polypeptide chain. The information present in the mRNA in the form of codon will code for the
amino acids needed for polypeptide chain synthesis.
What is RNA?
RNA is ribonucleic acid and is found in all living cells. It acts as the messenger carrying
instructions from DNA for the synthesis of proteins.
Few viruses will have RNA as their genetic material.
What is codon?
Codon is a sequence of three nucleotides and they together form a unit of genetic code in either
DNA or RNA.
What is anticodon?
It is found on tRNA and it is a sequence of three nucleotides which forms a genetic code on
tRNA, and these anticodon is complementary to the codons found on messenger RNA.
What is a protein molecule?
During translation, when amino acids are added in a sequential manner, the condensation of
amino acids will form a peptide bond in between them and finally forms a polypeptide chain. It
is the DNA through mRNA directs the protein synthesis.
Point mutation
In point mutation, only one or very few nucleotides will be affected or mutated in a gene
sequence.
Frame shift mutation
Either insertions or deletion can result in frame shift mutation, due to th.
Model Attribute Check Company Auto PropertyCeline George
In Odoo, the multi-company feature allows you to manage multiple companies within a single Odoo database instance. Each company can have its own configurations while still sharing common resources such as products, customers, and suppliers.
Acetabularia Information For Class 9 .docxvaibhavrinwa19
Acetabularia acetabulum is a single-celled green alga that in its vegetative state is morphologically differentiated into a basal rhizoid and an axially elongated stalk, which bears whorls of branching hairs. The single diploid nucleus resides in the rhizoid.
The Roman Empire A Historical Colossus.pdfkaushalkr1407
The Roman Empire, a vast and enduring power, stands as one of history's most remarkable civilizations, leaving an indelible imprint on the world. It emerged from the Roman Republic, transitioning into an imperial powerhouse under the leadership of Augustus Caesar in 27 BCE. This transformation marked the beginning of an era defined by unprecedented territorial expansion, architectural marvels, and profound cultural influence.
The empire's roots lie in the city of Rome, founded, according to legend, by Romulus in 753 BCE. Over centuries, Rome evolved from a small settlement to a formidable republic, characterized by a complex political system with elected officials and checks on power. However, internal strife, class conflicts, and military ambitions paved the way for the end of the Republic. Julius Caesar’s dictatorship and subsequent assassination in 44 BCE created a power vacuum, leading to a civil war. Octavian, later Augustus, emerged victorious, heralding the Roman Empire’s birth.
Under Augustus, the empire experienced the Pax Romana, a 200-year period of relative peace and stability. Augustus reformed the military, established efficient administrative systems, and initiated grand construction projects. The empire's borders expanded, encompassing territories from Britain to Egypt and from Spain to the Euphrates. Roman legions, renowned for their discipline and engineering prowess, secured and maintained these vast territories, building roads, fortifications, and cities that facilitated control and integration.
The Roman Empire’s society was hierarchical, with a rigid class system. At the top were the patricians, wealthy elites who held significant political power. Below them were the plebeians, free citizens with limited political influence, and the vast numbers of slaves who formed the backbone of the economy. The family unit was central, governed by the paterfamilias, the male head who held absolute authority.
Culturally, the Romans were eclectic, absorbing and adapting elements from the civilizations they encountered, particularly the Greeks. Roman art, literature, and philosophy reflected this synthesis, creating a rich cultural tapestry. Latin, the Roman language, became the lingua franca of the Western world, influencing numerous modern languages.
Roman architecture and engineering achievements were monumental. They perfected the arch, vault, and dome, constructing enduring structures like the Colosseum, Pantheon, and aqueducts. These engineering marvels not only showcased Roman ingenuity but also served practical purposes, from public entertainment to water supply.
Biological screening of herbal drugs: Introduction and Need for
Phyto-Pharmacological Screening, New Strategies for evaluating
Natural Products, In vitro evaluation techniques for Antioxidants, Antimicrobial and Anticancer drugs. In vivo evaluation techniques
for Anti-inflammatory, Antiulcer, Anticancer, Wound healing, Antidiabetic, Hepatoprotective, Cardio protective, Diuretics and
Antifertility, Toxicity studies as per OECD guidelines
A Strategic Approach: GenAI in EducationPeter Windle
Artificial Intelligence (AI) technologies such as Generative AI, Image Generators and Large Language Models have had a dramatic impact on teaching, learning and assessment over the past 18 months. The most immediate threat AI posed was to Academic Integrity with Higher Education Institutes (HEIs) focusing their efforts on combating the use of GenAI in assessment. Guidelines were developed for staff and students, policies put in place too. Innovative educators have forged paths in the use of Generative AI for teaching, learning and assessments leading to pockets of transformation springing up across HEIs, often with little or no top-down guidance, support or direction.
This Gasta posits a strategic approach to integrating AI into HEIs to prepare staff, students and the curriculum for an evolving world and workplace. We will highlight the advantages of working with these technologies beyond the realm of teaching, learning and assessment by considering prompt engineering skills, industry impact, curriculum changes, and the need for staff upskilling. In contrast, not engaging strategically with Generative AI poses risks, including falling behind peers, missed opportunities and failing to ensure our graduates remain employable. The rapid evolution of AI technologies necessitates a proactive and strategic approach if we are to remain relevant.
The French Revolution, which began in 1789, was a period of radical social and political upheaval in France. It marked the decline of absolute monarchies, the rise of secular and democratic republics, and the eventual rise of Napoleon Bonaparte. This revolutionary period is crucial in understanding the transition from feudalism to modernity in Europe.
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It is possible to hide or invisible some fields in odoo. Commonly using “invisible” attribute in the field definition to invisible the fields. This slide will show how to make a field invisible in odoo 17.
Palestine last event orientationfvgnh .pptxRaedMohamed3
An EFL lesson about the current events in Palestine. It is intended to be for intermediate students who wish to increase their listening skills through a short lesson in power point.
Welcome to TechSoup New Member Orientation and Q&A (May 2024).pdfTechSoup
In this webinar you will learn how your organization can access TechSoup's wide variety of product discount and donation programs. From hardware to software, we'll give you a tour of the tools available to help your nonprofit with productivity, collaboration, financial management, donor tracking, security, and more.
CLASS 11 CBSE B.St Project AIDS TO TRADE - INSURANCE
Transcription,translation and genetic code(cell biology)by welfredo yu
1.
2.
Cells are governed by a cellular chain of
command
DNA RNA protein
Transcription
Is the synthesis of RNA under the direction of
DNA
Produces messenger RNA (mRNA)
Translation
Is the actual synthesis of a polypeptide, which
occurs under the direction of mRNA
Occurs on ribosomes
The Genetic Code
a non-overlapping sequence, with each amino
acid plus polypeptide initiation and termination
specified by RNA codons composed of three
nucleotides.
5.
Genes can be expressed at
different efficiencies
• Gene A is transcribed
much more efficiently than
gene B
• This allows the amount of
protein A in the cell to be
greater than protein B
• The lower expression of
gene B is a reason behind
incomplete dominance
BIOL211
6. RNA is the bridge between
genes and the proteins for
which they code.
what is RNA?
9.
Codons
• A codon is three nucleotides in a row on
an RNA
molecule that codes for a single amino acid
• A specific three-nucleotide sequence
encodes for each
amino acid
12.
Template Strand
• During transcription, one of the two DNA
strands, called the template strand, provides
a template for ordering the sequence of
complementary nucleotides in an RNA
transcript
– The template strand is always the same strand for
a given gene
– However, different genes may be on opposite
strands
13.
• The genetic code is nearly
universal, shared by the simplest
bacteria to the most complex
animals
– Some species prefer certain
codons (codon bias)
• Genes can be transcribed and
translated after being
transplanted from one species
to another
EVOLUTION OF THE CODE
14.
History: linking genes
and proteins
1900’s Archibald Garrod
Inborn errors of metabolism: inherited human
metabolic diseases (more information)
Genes are the inherited factors
Enzymes are the biological molecules that drive
metabolic reactions
Enzymes are proteins
Question:
How do the inherited factors, the genes, control the
structure and activity of enzymes (proteins)?
15.
History: linking genes
and proteins
Beadle and Tatum (1941) PNAS USA 27, 499–506.
Hypothesis:
If genes control structure and activity of metabolic enzymes,
then mutations in genes should disrupt production of
required nutrients, and that disruption should be heritable.
Method:
Isolated ~2,000 strains from single irradiate spores
(Neurospora) that grew on rich but not minimal medium.
Examples: defects in B1, B6 synthesis.
Conclusion:
Genes govern the ability to synthesize amino acids, purines
and vitamins.
16.
History: linking genes
and proteins
1950s: sickle-cell anemia
Glu to Val change in hemoglobin
Sequence of nucleotides in gene determines sequence
of amino acids in protein
Single amino acid change can alter the function of the
protein
Tryptophan synthase gene in E. coli
Mutations resulted in single amino acid change
Order of mutations in gene same as order of affected
amino acids
18.
From gene to protein:
transcription
Gene sequence (DNA) recopied or transcribed to
RNA sequence
Product of transcription is a messenger molecule that
delivers the genetic instructions to the protein
synthesis machinery: messenger RNA (mRNA)
19.
Transcription: evidence
for mRNA
Brenner, S., Jacob, F. and Meselson, M. (1961) Nature
190, 576–81.
Question: How do genes work?
Does each one encode a different type of ribosome
which in turn synthesizes a different protein, OR
Are all ribosomes alike, receiving the genetic
information to create each different protein via some
kind of messenger molecule?
20.
Transcription: evidence
for mRNA
E. coli cells switch from making bacterial proteins to
phage proteins when infected with bacteriophage T4.
Grow bacteria on medium containing “heavy”
nitrogen (15N) and carbon (13C).
Infect with phage T4.
Immediately transfer to “light” medium containing
radioactive uracil.
21.
Transcription: evidence
for mRNA
If genes encode different ribosomes, the newly
synthesized phage ribosomes will be “light”.
If genes direct new RNA synthesis, the RNA will contain
radiolabeled uracil.
Results:
Ribosomes from phage-infected cells were “heavy”,
banding at the same density on a CsCl gradient as the
original ribosomes.
Newly synthesized RNA was associated with the heavy
ribosomes.
New RNA hybridized with viral ssDNA, not bacterial
ssDNA.
22.
Transcription: evidence
for mRNA
Conclusion
Expression of phage DNA results in new phage-
specific RNA molecules (mRNA)
These mRNA molecules are temporarily associated
with ribosomes
Ribosomes do not themselves contain the genetic
directions for assembling individual proteins
23.
Transcription: overview
Transcription requires:
ribonucleoside 5´ triphosphates:
ATP, GTP, CTP and UTP
bases are adenine, guanine, cytosine and uracil
sugar is ribose (not deoxyribose)
DNA-dependent RNA polymerase
Template (sense) DNA strand
Animation of transcription
24.
Transcription: overview
Features of transcription:
RNA polymerase catalyzes sugar-phosphate bond
between 3´-OH of ribose and the 5´-PO4.
Order of bases in DNA template strand determines
order of bases in transcript.
Nucleotides are added to the 3´-OH of the growing
chain.
RNA synthesis does not require a primer.
25.
Transcription: overview
In prokaryotes transcription and translation are
coupled. Proteins are synthesized directly from the
primary transcript as it is made.
In eukaryotes transcription and translation are
separated. Transcription occurs in the nucleus, and
translation occurs in the cytoplasm on ribosomes.
Figure comparing eukaryotic and prokaryotic
transcription and translation.
26.
Transcription: RNA
Polymerase
DNA-dependent
DNA template, ribonucleoside 5´ triphosphates, and Mg2+
Synthesizes RNA in 5´ to 3´ direction
E. coli RNA polymerase consists of 5 subunits
Eukaryotes have three RNA polymerases
RNA polymerase II is responsible for transcription of
protein-coding genes and some snRNA molecules
RNA polymerase II has 12 subunits
Requires accessory proteins (transcription factors)
Does not require a primer
28.
Transcription: promoter
recognition
Transcription factors bind to promoter sequences and
recruit RNA polymerase.
DNA is bound first in a closed complex. Then, RNA
polymerase denatures a 12–15 bp segment of the DNA
(open complex).
The site where the first base is incorporated into the
transcription is numbered “+1” and is called the
transcription start site.
Transcription factors that are required at every promoter
site for RNA polymerase interaction are called basal
transcription factors.
29.
Promoter recognition: promoter sequences
Promoter sequences vary considerably.
RNA polymerase binds to different promoters with
different strengths; binding strength relates to the
level of gene expression
There are some common consensus sequences for
promoters:
Example: E. coli –35 sequence (found 35 bases 5´ to the
start of transcription)
Example: E. coli TATA box (found 10 bases 5´ to the
start of transcription)
30.
Promoter recognition:
enhancers
Eukaryotic genes may also have enhancers.
Enhancers can be located at great distances from the
gene they regulate, either 5´ or 3´ of the transcription
start, in introns or even on the noncoding strand.
One of the most common ways to identify promoters
and enhancers is to use a reporter gene.
31.
Promoter recognition:
other players
Many proteins can regulate gene expression by
modulating the strength of interaction between the
promoter and RNA polymerase.
Some proteins can activate transcription (upregulate
gene expression).
Some proteins can inhibit transcription by blocking
polymerase activity.
Some proteins can act both as repressors and
activators of transcription.
32.
Transcription: chain
initiation
Chain initiation:
RNA polymerase locally denatures the DNA.
The first base of the new RNA strand is placed
complementary to the +1 site.
RNA polymerase does not require a primer.
The first 8 or 9 bases of the transcript are linked.
Transcription factors are released, and the
polymerase leaves the promoter region.
Figure of bacterial transcription initiation.
33.
Transcription: chain
elongation
Chain elongation:
RNA polymerase moves along the transcribed or
template DNA strand.
The new RNA molecule (primary transcript) forms a
short RNA-DNA hybrid molecule with the DNA
template.
34.
Transcription: chain
termination
Most known about bacterial chain termination
Termination is signaled by a sequence that can form
a hairpin loop.
The polymerase and the new RNA molecule are
released upon formation of the loop.
Review the transcription animation.
35.
Transcription: mRNA
synthesis/processing
Prokaryotes: mRNA transcribed directly from DNA
template and used immediately in protein synthesis
Eukaryotes: primary transcript must be processed to
produce the mRNA
Noncoding sequences (introns) are removed
Coding sequences (exons) spliced together
5´-methylguanosine cap added
3´-polyadenosine tail added
36.
Transcription: mRNA
synthesis/processing
Removal of introns and splicing of exons can occur
several ways
For introns within a nuclear transcript, a spliceosome is
required.
Splicesomes protein and small nuclear RNA (snRNA)
Specificity of splicing comes from the snRNA, some of
which contain sequences complementary to the splice
junctions between introns and exons
Alternative splicing can produce different forms of a protein
from the same gene
Mutations at the splice sites can cause disease
Thalassemia • Breast cancer (BRCA 1)
37.
Transcription: mRNA
synthesis/processing
RNA splicing inside the nucleus on particles called
spliceosomes.
Splicesomes are composed of proteins and small
RNA molecules (100–200 bp; snRNA).
Both proteins and RNA are required, but some
suggesting that RNA can catalyze the splicing
reaction.
Self-splicing in Tetrahymena: the RNA catalyzes its
own splicing
Catalytic RNA: ribozymes
38.
From gene to protein:
genetic code
Central Dogma
Information travels from DNA to RNA to Protein
Is there a one-to-one correspondence between DNA,
RNA and Protein?
DNA and RNA each have four nucleotides that can form
them; so yes, there is a one-to-one correspondence between
DNA and RNA.
Proteins can be composed of a potential 20 amino acids;
only four RNA nucleotides: no one-to-one correspondence.
How then does RNA direct the order and number of amino
acids in a protein?
39.
From gene to protein:
genetic code
How many bases are required for each amino acid?
(4 bases)2bases/aa = 16 amino acids—not enough
(4 bases)3bases/aa = 64 amino acid possibilities
Minimum of 3 bases/aa required
What is the nature of the code?
Does it have punctuation? Is it overlapping?
Crick, F.H. et al. (1961) Nature 192, 1227–32.
(http://profiles.nlm.nih.gov/SC/B/C/B/J/ )
3-base, nonoverlapping code that is read from a fixed
point.
40.
From gene to protein:
genetic code
Nirenberg and Matthaei: in vitro protein translation
Found that adding rRNA prolonged cell-free protein
synthesis
Adding artificial RNA synthesized by polynucleotide
phosphorylase (no template, UUUUUUUUU)
stimulated protein synthesis more
The protein that came out of this reaction was
polyphenylalanine (UUU = Phe)
Other artificial RNAs: AAA = Lys; CCC =Pro
41.
From gene to protein:
genetic code
Nirenberg:
Triplet binding assay: add triplet RNA, ribosomes, binding
factors, GTP, and radiolabeled charged tRNA (figure)
UUU trinucleotide binds to Phe-tRNA
UGU trinucleotide binds to CYS-tRNA
By fits and starts the triplet genetic code was worked out.
Each three-letter “word” (codon) specifies an amino acid or
directions to stop translation.
The code is redundant or degenerate: more than one way to
encode an amino acid
42.
From gene to protein:
Translation
Components required for translation:
mRNA
Ribosomes
tRNA
Aminoacyl tRNA synthetases
Initiation, elongation and termination factors
Animation of translation
43.
Translation: initiation
Ribosome small subunit binds to mRNA
Charged tRNA anticodon forms base pairs with the
mRNA codon
Small subunit interacts with initiation factors and
special initiator tRNA that is charged with
methionine
mRNA-small subunit-tRNA complex recruits the
large subunit
Eukaryotic and prokaryotic initiation differ slightly
44.
Translation: initiation
The large subunit of the ribosome contains three
binding sites
Amino acyl (A site)
Peptidyl (P site)
Exit (E site)
At initiation,
The tRNAfMet occupies the P site
A second, charged tRNA complementary to the next
codon binds the A site.
45.
Translation: elongation
Elongation
Ribosome translocates by three bases after peptide
bond formed
New charged tRNA aligns in the A site
Peptide bond between amino acids in A and P sites is
formed
Ribosome translocates by three more bases
The uncharged tRNA in the A site is moved to the E
site.
46.
Translation: elongation
EF-Tu recruits charged tRNA to A site. Requires
hydrolysis of GTP
Peptidyl transferase catalyzes peptide bond
formation (bond between aa and tRNA in the P
site converted to peptide bond between the two
amino acids)
Peptide bond formation requires RNA and may
be a ribozyme-catalyzed reaction
47.
Translation: termination
Termination
Elongation proceeds until STOP codon reached
UAA, UAG, UGA
No tRNA normally exists that can form base pairing
with a STOP codon; recognized by a release factor
tRNA charged with last amino acid will remain at P
site
Release factors cleave the amino acid from the tRNA
Ribosome subunits dissociate from each other
Review the animation of translation
48. 48
Genetic code:
Def. Genetic code is the nucleotide base sequence on DNA ( and
subsequently on mRNA by transcription) which will be translated into a
sequence of amino acids of the protein to be synthesized.
The code is composed of codons
Codon is composed of 3 bases ( e.g. ACG or UAG). Each codon is
translated into one amino acid.
The 4 nucleotide bases (A,G,C and U) in mRNA are used to produce the
three base codons. There are therefore, 64 codons code for the 20 amino
acids, and since each codon code for only one amino acids this means
that, there are more than one cone for the same amino acid.
How to translate a codon (see table):
This table or dictionary can be used to translate any codon sequence.
Each triplet is read from 5′ → 3′ direction so the first base is 5′ base,
followed by the middle base then the last base which is 3′ base.
49. 49
Examples: 5′- A UG- 3′ codes for methionine
5′- UCU- 3′ codes for serine
5′ - CCA- 3′ codes for proline
Termination (stop or nonsense) codons:
Three of the 64 codons; UAA, UAG, UGA do not code for any amino
acid. They are termination codes which when one of them appear in
mRNA sequence, it indicates finishing of protein synthesis.
Characters of the genetic code:
1- Specificity: the genetic code is specific, that is a specific codon
always code for the same amino acid.
2- Universality: the genetic code is universal, that is, the same codon is
used in all living organisms, procaryotics and eucaryotics.
3- Degeneracy: the genetic code is degenerate i.e. although each codon
corresponds to a single amino acid,one amino acid may have more than
one codons. e.g arginine has 6 different codons (give more examples
from the table).
51. 51
Gene mutation (altering the nucleotide sequence):
1- Point mutation: changing in a single nucleotide base on the mRNA
can lead to any of the following 3 results:
i- Silent mutation: i.e. the codon containg the changed base may code
for the same amino acid. For example, in serine codon UCA, if A is
changed to U giving the codon UCU, it still code for serine. See table.
ii- Missense mutation: the codon containing the changed base may code
for a different amino acid. For example, if the serine codon UCA is
changed to be CCA ( U is replaced by C), it will code for proline not
serine leading to insertion of incorrect amino acid into polypeptide chain.
iii- Non sense mutation: the codon containing the changed base may
become a termination codon. For example, serine codon UCA becomes
UAA if C is changed to A. UAA is a stop codon leading to termination
of translation at that point.
53. 53
Types of point mutation:
U A A (termination codon) Nonsense mutation
↑
U C A → U C U Silent mutation
(codon for serine) (codon for serine)
↓
C C A ( codon for proline) Missense mutation:
Give other examples on missense mutation which leads to some Hb
disease.
54. 54
2- Frame- shift mutation:
deletion or addition of one or two base to
message sequence, leading to change in
reading frame (reading sequence) and the
resulting amino acid seuence may become
completely different from this point.
55. 55
Translation
Components required for protein synthesis:
1- Amino acids: all amino acids involved in the
finished protein must be present at the time of
protein synthesis.
2- Ribosomes: the site of protein synthesis. They are
large complexes of protein and rRNA. In human,
they consist of two subunits, one large (60S) and one
small (40S).
3- tRNA: at least one specific type of tRNA is required to transfer
one amino acid. There about 50 tRNA in human for the 20 amino
acids, this means some amino acids have more than one specific
tRNA. The role of tRNA in protein synthesis is discussed before.
(amino acid attachment and anticodon loop).
4- aminoacyl-tRNA synthetase: This is the enzyme that catalyzes the
attachment of amino acid with its corresponding tRNA forming
aminoacyl tRNA
56. 56
5- mRNA: that carry code for the protein to be synthesized
6- protein factors: Initiation, elongation and termination (or release)
factors are required for peptide synthesis
7- ATP and GTP : are required as source of energy.
Steps: (movie)
1- Initiation:
Initiation (start) codon is usually AUG which is the codon of
methionine, so the initiator tRNA is methionnyl tRNA (Met. tRNA).
a- The initiation factors (IF-1, IF-2 and IF-3) binds the Met. tRNA with
small ribosomal subunit then to mRNA containing the code of the
protein to be synthesized. IFs recognizes mRNA from its 5' cap
57. 57
b-This complex binds to large ribosomal subunit forming initiation complex in which
Met. tRNA is present in P- site of 60 ribosomal subunit.
NB:- tRNA bind with mRNA by base pairing between codon on mRNA and anticodon
on tRNA.
- mRNA is read from 5′ → 3′ direction
P-site: is the peptidyl site of the ribosome to which methionyl tRNA is placed (enter).
2- Elongation: elongation factors (EFs) stimulate the stepwise elongation of
polypeptide chain as follow:
a- The next aminoacyl tRNA (tRNA which carry the next amino acid specified by
recognition of the next codon on mRNA) will enter A site of ribosome
A site or acceptor site or aminoacyl tRNA site:
Is the site of ribosome to which each new incoming aminoacyl tRNA will enter.
58. b) ribosomal peptidyl transferase enzyme will transfer methionine
from methionyl tRNA into A site to form a peptide bond between
methionine and the new incoming amino acid to form dipeptidyl
tRNA.
c) Elongation factor-2 (EF-2), (called also, translocase): moves
mRNA and dipeptidyl tRNA from A site to P site leaving A site free to
allow entrance of another new aminoacyl tRNA.
The figure shows the repetitive cycle of elongation of chain. Each
cycle is consisting of
1) codon recognition and the entrance of the new aminoacyl tRNA
acid ( amino acid carried on tRNA) into A site,
2) The growing chain in P site will moved to A site with peptide
bond formation with the new amino acid
3) Translocation of growing chain to P site allowing A site free for
enterance of new amino acid an so on………………….. Resulting in
elongation of poly peptide chain.
60. 60
3- Termination: occurs when one of the three stop codons (UAA, UAG or
UGA) enters A site of the ribosome. These codons are recognized by release
factors (RFs) which are RF-1, RF-2, RF-3. RFs cause the newly synthesized
protein to be released from the ribosomal complex and dissociation of
ribosomes from mRNA (i.e. cause dissolution of the complex)