DNA repair mechanisms are indispensable for cell maintenance. The most common repair mechanisms are base excision repair (BER) and nucleotide excision repair (NER). Deficiencies in repair can lead to diseases like cancer or myelodysplastic syndrome. Studies have found that some viruses like murine polyomavirus activate DNA damage repair proteins like ATR and MRE11 to promote viral replication. Understanding DNA repair is important for developing new treatments for diseases linked to repair deficiencies and viral infections.
In this presentation, i have described how defects in DNA repair results in cancer and various DNA repair genes which are involved in the repair of damaged DN
In this presentation, i have described how defects in DNA repair results in cancer and various DNA repair genes which are involved in the repair of damaged DN
Mismatch Repair Mechanism Is One Of The Important DNA Repair Mechanism Which Recognizes And Replaces The Wrong Nucleotides. DNA Repair Is Important Since Its Failure Leads To Deadly Diseases Like Cancer. In This Presentation, You Will Learn About DNA Repair, Mismatch Repair, Proteins Involved In Prokaryotic And Eukaryotic MMR, Diagrams, Biological Importance Of MMR And References For Further Study.
Mismatch Repair Mechanism Is One Of The Important DNA Repair Mechanism Which Recognizes And Replaces The Wrong Nucleotides. DNA Repair Is Important Since Its Failure Leads To Deadly Diseases Like Cancer. In This Presentation, You Will Learn About DNA Repair, Mismatch Repair, Proteins Involved In Prokaryotic And Eukaryotic MMR, Diagrams, Biological Importance Of MMR And References For Further Study.
Allelic Imbalance for Pre-capture Whole Exome SequencingDenis C. Bauer
Exome sequencing has emerged as an economical way of focusing DNA sequencing efforts on the most functionally understood regions of the genome. Pre-capture pooling, where one bait library is used to pull down the exonic regions of several pooled samples simultaneously is a further financial improvement.
However, rare alleles in the pool might not be able to attract baits at the same rate as reference conform sequences can, and may hence be underrepresented. We investigated this potential issue by sequencing a hapmap family (4 individuals) using the pre-capture protocol from Illumina and Nimblegen. We did not observe clear evidence that heterozygote variants are missed but noted a trend for indels to be imbalanced.
Our findings do not provide clear evidence to rule out allelic imbalance or bias having an impact on research findings, this may be especially critical for low cellular cancer tissue where rare alleles are more ubiquitous.
Whole Exome Sequencing (WES) is next-generation technology.Akash Jayswal
Whole Exome Sequencing (WES) is next-generation technology used for strategically sequencing the coding region of the genome, i.e. the exon. The exome, which is the total of all exons of an organism, represents only 1–2% of the total genome and is actually converted into proteins after translation.
Elizabeth Swisher, MD, gives an update on the research being performed by the Stand Up to Cancer Ovarian Cancer Dream Team, supported by the National Ovarian Cancer Coalition (NOCC), OCRF, and OCNA.
The mechanisms of DNA repair help us maintain the body in a normal physiological state, despite of the constant inducing damage that we are exposed.
But if these repair mechanisms fail for some reason it could cause mutations, cell death and many diseases.
Therefore, a low mutation rate indicates the efficiency of repair mechanisms, but a failure of these will be the cause of several mutations.
Several studies point to the discovery of new mechanisms of repair, so try to create treatments for diseases.
The concept of transferring genes to tissues for clinical applications has been discussed for nearly half a century, but the ability to manipulate genetic material via recombinant DNA technology has brought this goal to reality. ‘Gene Therapy’ covers both the research and clinical applications of the new genetic therapy techniques currently being developed. The application of molecular biology has revolutionized researchers understanding of many diseases and has been readily applied for diagnostic purposes. Now-a-day this is originally conceived as a way to treat life-threatening disorders (inborn errors, cancers) refractory to conventional treatment, gene therapy now is considered for many non–life-threatening conditions, including those adversely affecting a patient’s quality of life. The lack of suitable treatment has become a rational basis for extending the scope of gene therapy. It is not very far, the justifiable optimism that with increased biotechnological improvement, gene therapy will become a standard part of clinical practice.
Knee anatomy and clinical tests 2024.pdfvimalpl1234
This includes all relevant anatomy and clinical tests compiled from standard textbooks, Campbell,netter etc..It is comprehensive and best suited for orthopaedicians and orthopaedic residents.
ARTIFICIAL INTELLIGENCE IN HEALTHCARE.pdfAnujkumaranit
Artificial intelligence (AI) refers to the simulation of human intelligence processes by machines, especially computer systems. It encompasses tasks such as learning, reasoning, problem-solving, perception, and language understanding. AI technologies are revolutionizing various fields, from healthcare to finance, by enabling machines to perform tasks that typically require human intelligence.
Basavarajeeyam is an important text for ayurvedic physician belonging to andhra pradehs. It is a popular compendium in various parts of our country as well as in andhra pradesh. The content of the text was presented in sanskrit and telugu language (Bilingual). One of the most famous book in ayurvedic pharmaceutics and therapeutics. This book contains 25 chapters called as prakaranas. Many rasaoushadis were explained, pioneer of dhatu druti, nadi pareeksha, mutra pareeksha etc. Belongs to the period of 15-16 century. New diseases like upadamsha, phiranga rogas are explained.
NVBDCP.pptx Nation vector borne disease control programSapna Thakur
NVBDCP was launched in 2003-2004 . Vector-Borne Disease: Disease that results from an infection transmitted to humans and other animals by blood-feeding arthropods, such as mosquitoes, ticks, and fleas. Examples of vector-borne diseases include Dengue fever, West Nile Virus, Lyme disease, and malaria.
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Ve...kevinkariuki227
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Verified Chapters 1 - 19, Complete Newest Version.pdf
TEST BANK for Operations Management, 14th Edition by William J. Stevenson, Verified Chapters 1 - 19, Complete Newest Version.pdf
Lung Cancer: Artificial Intelligence, Synergetics, Complex System Analysis, S...Oleg Kshivets
RESULTS: Overall life span (LS) was 2252.1±1742.5 days and cumulative 5-year survival (5YS) reached 73.2%, 10 years – 64.8%, 20 years – 42.5%. 513 LCP lived more than 5 years (LS=3124.6±1525.6 days), 148 LCP – more than 10 years (LS=5054.4±1504.1 days).199 LCP died because of LC (LS=562.7±374.5 days). 5YS of LCP after bi/lobectomies was significantly superior in comparison with LCP after pneumonectomies (78.1% vs.63.7%, P=0.00001 by log-rank test). AT significantly improved 5YS (66.3% vs. 34.8%) (P=0.00000 by log-rank test) only for LCP with N1-2. Cox modeling displayed that 5YS of LCP significantly depended on: phase transition (PT) early-invasive LC in terms of synergetics, PT N0—N12, cell ratio factors (ratio between cancer cells- CC and blood cells subpopulations), G1-3, histology, glucose, AT, blood cell circuit, prothrombin index, heparin tolerance, recalcification time (P=0.000-0.038). Neural networks, genetic algorithm selection and bootstrap simulation revealed relationships between 5YS and PT early-invasive LC (rank=1), PT N0—N12 (rank=2), thrombocytes/CC (3), erythrocytes/CC (4), eosinophils/CC (5), healthy cells/CC (6), lymphocytes/CC (7), segmented neutrophils/CC (8), stick neutrophils/CC (9), monocytes/CC (10); leucocytes/CC (11). Correct prediction of 5YS was 100% by neural networks computing (area under ROC curve=1.0; error=0.0).
CONCLUSIONS: 5YS of LCP after radical procedures significantly depended on: 1) PT early-invasive cancer; 2) PT N0--N12; 3) cell ratio factors; 4) blood cell circuit; 5) biochemical factors; 6) hemostasis system; 7) AT; 8) LC characteristics; 9) LC cell dynamics; 10) surgery type: lobectomy/pneumonectomy; 11) anthropometric data. Optimal diagnosis and treatment strategies for LC are: 1) screening and early detection of LC; 2) availability of experienced thoracic surgeons because of complexity of radical procedures; 3) aggressive en block surgery and adequate lymph node dissection for completeness; 4) precise prediction; 5) adjuvant chemoimmunoradiotherapy for LCP with unfavorable prognosis.
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- Video recording of this lecture in English language: https://youtu.be/lK81BzxMqdo
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2. DNA REPAIR
MECHANISM
S
CREATED BY: María Camila
Ocampo Yepes
MOLECULAR BIOLOGY
TEACHER: Lina Martínez
MEDICAL UTILITY
Many pathologies are
associated with deficient repair
mechanisms , because this
condition can modify the normal
cell process.
The most common example is
cancer, in this disease, the cell
loses the capacity of recognize
and repair the damaged DNA
and continues with the cell
cycle, allowing a mutagenic
proliferation.
In order to predict and create an
effective treatment for these
conditions, the actual
investigations are focus on
innumerable topics about DNA
damaged repair.
BIBLIOGRAPHY
• MARTINEZ SÁNCHEZ, Lina María.
Biología molecular. 8. ed. Medellín:
UPB. Fac. de Medicina, 2015. 109-
115 p.
• Federal University of Ceara. (2016,
July 22). Influence of functional
polymorphisms in DNA repair genes
of myelodysplastic syndrome.
Leukemia Research. Retrieved
August 28, 2016 from
http://www.sciencedirect.com.consu
ltaremota.upb.edu.co/science/article
/pii/S0145212616301400
• Developmental Biology and
BioFrontiers Institute; University of
Colorado. (2016, July 26). Activation
of DNA damage repair pathways by
murine polyomavirus. Virology.
Retrieved August 28, 2016 from
http://www.sciencedirect.com.consu
ltaremota.upb.edu.co/science/article
/pii/S0042682216302021
3. Influence of functional
polymorphisms in DNA repair
genes of myelodysplastic
syndrome
The myelodysplastic syndrome is a group
of diseases characterized by multiple
cytopenias, as a consequence of an altered
stem cell in the marrow bone.
Researchers at Federal University of
Ceara, discovered several polymorphisms
associated with the deficient of DNA repair
Mechanisms that cause this pathology.
My point of view
the relation between polymorphisms of
specific genes and the
myelodysplastic syndrome,
represents a new scientific
field for its diagnosis and
treatment. For this reason
the study of the implicated
genes in these diseases, is
a significant opportunity
for a future genetic therapy.
INTRODUCTION
The DNA damage repair is a
process of the cell cycle, that
consist in to correct the mistakes
of genoma, happen during DNA
replication or caused by exogen
agents.
The aim of this process is to avoid
or to reduce the genetics mutation.
Some mechanims for DNA repair
are the elimination of mutagenics,
the nucleotids excision repair
(NER), the bases excision repair
(BER) and incorrect nucleotide
pairing repair.
Activation of DNA damage
repair pathways by murine
polyomavirus
Murine polyomavirus is a dsDNA virus that
causes serious respiratory, renal and brain
diseases. It must replicate in the nucleus
because some of the proteins that allow
DNA damage repair are necessary for its
development during the viral replication as
a consequence Murine polyomavirus use to
activate DNA damage repair pathways.
Ataxia-telangiectasia and Rad3 related
(ATR) and double strand break repair (MRE
11) are the principal proteins activated by
polyomavirus in order to optimize replicating
viral DNA.
My point of view
I consider that this investigation
is essential for to know
other options of treatment
in the viral infections, based
in the regulation or control
of members of DNA Damage
Repair pathways.
4. INTRODUCTION INTRODUCTION
The DNA damage repair is a
process of the cell cycle, that consist
in to correct the mistakes of
genoma, happen during DNA
replication or caused by exogen
agents.
The aim of this process is to avoid or
to reduce the genetics mutation.
Some mechanims for DNA repair
are the elimination of mutagenics,
the nucleotids excision repair (NER),
the bases excision repair (BER) and
incorrect nucleotide pairing repair.
DNA repair mechanisms are indispensable for
cell maintenance, no matter how emerged the
mutations, as a result of incorrect base pairs,
radiation exposure or caused by chemical
agents.
The most common DNA repair
mechanisms in humans are BER
and NER
5. Activation of DNA damage repair pathways by
murine polyomavirus
Authors: Katie Heiser, Catherine
Nicholas, Robert L. Garcea
26th July, 2016.
This investigation tried to identify
the proteins of DNA repair
mechanisms necessary for viral
replication.
Activation of DNA damage
repair pathways by murine
polyomavirus
Murine polyomavirus is a dsDNA virus that
causes serious respiratory, renal and brain
diseases. It must replicate in the nucleus
because some of the proteins that allow
DNA damage repair are necessary for its
development during the viral replication as
a consequence Murine polyomavirus use to
activate DNA damage repair pathways.
Ataxia-telangiectasia and Rad3 related
protein (ATR) and double strand break
repair protein (MRE 11) are the principal
proteins activated by polyomavirus in order
to optimize replicating viral DNA.
My perspective
I consider that this investigation
is essential for to know
other options of treatment
in the viral infections, based
in the regulation or control
of members of DNA Damage Repair
pathways.
6. Activation of DNA damage repair
pathways by murine polyomavirus
DNA damage repair proteins
can to promote the viral
replication, though also it has
the capacity to inhibit the viral
development .
7. Activation of DNA damage repair
pathways by murine polyomavirus
Ataxia telangiectasia and Rad3-related
protein (ATR) is an enzime responsible to
detect mistakes in DNA and activating
checkpoints, in order to correct it.
Ataxia telangiectasia and Rad3-related
protein (ATR) is an enzime responsible to
detect mistakes in DNA and activating
checkpoints, in order to correct it.
Double-strand break repair protein
(Mre11) is a protein with exonuclease
and
endonuclease activity, that take part
in homologous recombination.
8. Activation of DNA damage repair
pathways by murine polyomavirus
During infection Murine
polyomavirus uses MRE11
and ATR in order to stabilizes
its replication, due to this the
decrease of proteins means a
lowest viral production.
9. Activation of DNA damage repair pathways by
murine polyomavirus
Student’s observation
I consider that this study is really important in the search of
new forms of treatment for the infections caused by
polyomavirus and others opportunistic viruses and is
certainly very interesting that a same pathways can to
avoid or promete the viral replication.
10. Influence of functional polymorphisms in DNA
repair genes of myelodysplastic syndrome
Cancer Cytogenomic Laboratory, Center for
Research and Drug Development (NPDM),
Federal University of Ceara
22nd July, 2016.
This study tried to identify polymorphism
associated to myelodysplastic diseases in
relation with a defective DNA mismatch
repair system.
Influence of functional
polymorphisms in DNA repair
genes of myelodysplastic
syndrome
The myelodysplastic syndrome is a group
of diseases characterized by multiple
cytopenias, as a consequence of an altered
stem cell in the marrow bone.
Researchers at Federal University of
Ceara, discovered several polymorphisms
associated with the deficient of DNA repair
Mechanisms that cause this pathology.
My point of view
the relation between polymorphisms of
specific genes and the
myelodysplastic syndrome,
represents a new scientific
field for its diagnosis and
treatment. For this reason
the study of the implicated
genes in these diseases, is
a significant opportunity
for a future genetic therapy.
11. Influence of functional polymorphisms in DNA
repair genes of myelodysplastic syndrome
Myelodysplastic diseases
is the result of the
proliferation of mutated
stem cells.
Some genetic
polymorphisms affect the
capacity of repair DNA.
12. Influence of functional polymorphisms in DNA
repair genes of myelodysplastic syndrome
The polymorphism of genes that are
responsible of Homologous
recombination (BRCA1, BRCA2 and
RAD51) and non-homologous
recombination ( XRCC5, XRCC6 and
LIG4) are associated with
myelodisplasic diseases.
13. Influence of functional polymorphisms in DNA
repair genes of myelodysplastic syndrome
Furthermore the upregulation of
several genes such as XRCC6
and LIG4, is a considerable
characteristic of damages in
DNA.
14. Influence of functional polymorphisms in DNA repair genes
of myelodysplastic syndrome
Student’s observation
I consider that this investigation is determinant to find effective
myelodysplastic syndrome markers, that allow a early treatment,
in this way the incidence of this terrible pathology could to
decrease.
15. MEDICAL UTILITY
If a cell does not recognize genetic
disorders, won't activate the
checkpoints and the damage will
pass to daughter cells.
For this reason the investigation in
repair mechanisms is very
important in the search of new
treatments.
MEDICAL UTILITY
Many pathologies are
associated with deficient repair
mechanisms , because this
condition can modify the normal
cell process.
The most common example is
cancer, in this disease, the cell
loses the capacity of recognize
and repair the damaged DNA
and continues with the cell
cycle, allowing a mutagenic
proliferation.
In order to predict and create an
effective treatment for these
conditions, the actual
investigations are focus on
innumerable topics about DNA
damaged repair.
16. MEDICAL UTILITY
Also the study of DNA damage
repair, and the involved proteins,
allow to understand the action
mechanism of many viruses and
the form of stop it.
17. MEDICAL UTILITY
The relation between pathogenic
process and the presence of
proteins involved in DNA repair,
could mean the development of
new ways for detection and
control of several diseases.
18. MEDICAL UTILITY
For an adequate treatment is necessary to understand
that gene expression can to change from one person
to another, in this way the identified polymorphisms
represents an important tool for the gene therapy.
19. BIBLIOGRAPHY
MARTINEZ SÁNCHEZ, Lina María. Biología molecular. 8. ed.
Medellín: UPB. Fac. de Medicina, 2015. 109-115 p.
Federal University of Ceara. (2016, July 22). Influence of
functional polymorphisms in DNA repair genes of
myelodysplastic syndrome. Leukemia Research. Retrieved
August 28, 2016 from http://
www.sciencedirect.com.consultaremota.upb.edu.co/science/a
rticle/pii/S0145212616301400
Developmental Biology and BioFrontiers Institute; University
of Colorado. (2016, July 26). Activation of DNA damage repair
pathways by murine polyomavirus. Virology. Retrieved August
28, 2016 from http://
www.sciencedirect.com.consultaremota.upb.edu.co/science/a
rticle/pii/S0042682216302021