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By
KAUSHAL KUMAR SAHU
Assistant Professor (Ad Hoc)
Department of Biotechnology
Govt. Digvijay Autonomous P. G. College
Raj-Nandgaon ( C. G. )
Synopsis
• Introduction
• The big question
• Evolution of gene regulation
• Gene regulation in eukaryotes
• Points of control
 Packing/unpacking DNA
 Transcription
 mRNA processing
 mRNA transport
 Translation
 Protein processing
 Protein degradation
• Difference between eukaryotic &
prokaryotic gene expression
• Conclusions
• References
Introduction
Gene -Regulation
• Expression of genetic information by eukaryotic cell
is a multi step process, beginning with transcription
of DNA, and ending with a protein that perform a
particular function.
• Gene expression is the process by which information
from a gene is used in the synthesis of a functional
gene product.
The Big Question….?
• How are genes turned on & turned off in
eukaryotes ?
• How do cell with the same genes differentiate
to perform completely different, specialized
functions ?
Evolution of gene regulation
Eukaryotes
Multicellular
 Evolved to maintain constant internal conditions
while facing changing conditions –Homeostasis
Regulate body as a whole
-Growth and development
-Long term processes
Specialization
-Turn off and on long number of genes
GENE REGULATION
Points of control
The control of gene expression
can occur at any step in pathway
from gene to functional protein
 Packing/unpacking DNA
 Transcription
 mRNA processing
 mRNA transport
 Translation
 Protein processing
 Protein degradation
DNA Packing
• How do you fit
all that DNA into
nucleus ?
 DNA coiling &folding
 Double helix
 Nucleosomes
 Chromatin fibers
 Looped domain
Neucleosomes
• “Beads on string ”
 First level of DNA packing
 Histone protein
o 8 protein molecules
o Positively charge amino acid
o Bind tightly to negatively charge DNA
DNA packing as gene control
• Degree of packing of DNA regulates transcription
 Tightly wrapped around histone
 No transcription Heterochromatin –Darker DNA [Tightly packed ]
 Genes turned off Euchromatin - Lighter DNA [Loosely packed ]
DNA methylation
Methylation of DNA block transcriptional factors
No transcription
- genes turned off
Attachment of methyl
Group to cytosine
Nearly permanent
activation of gene
Histone acetylation
Acetylation of histones unwind DNA
 Loosely wrapped around histone
• Enable transcription
• Genes turned on
 Attachment of acetyl group to histone
• conformational change in histone protein
• Transcription factor have easier access
to genes
Transcription initiation
Control region on DNA
 Promoter
 Nearby control sequence on DNA
 Binding of RNA polymerase & transcription factor
 “base” rate of transcription
 Enhancer
 Distant control sequence
on DNA
 binding of activator protein
 “enhanced “ (high level) rate of
transcription
Model for enhancer action
Transcription complex
Post - transcriptional control
Alternative RNA splicing
 Variable processing of exons creates a family of protein
Regulation of mRNA degradation
Life span of mRNA determines amount of
protein
 mRNA can lost from hours to weeks
RNA interference
Small interfering RNAs (siRNA)
1.short segment of RNA (21-28)
(a) bind to mRNA
(b) create section of double-stranded mRNA
(c) “death” tag for mRNA
(i) Triggers degradation of mRNA
2.cause gene “silencing”
(a)post transcriptional control
(b)Turn off gene=no protein produce
Action of siRNA
Control of translation
Block initiation of translation stage
 Regulatory protein attach to 5’ end of mRNA
(1) Prevent attach of ribosomal subunit & initiator tRNA
(2) Block translation of mRNA to protein
Post - translational modification
Protein processing and
degradation
Protein processing
 Folding cleaving, adding sugar groups, targeting for
transport
Protein degradation
 Ubiquitin tagging
 Proteasome
degradation
Differences between eukaryotic
and prokaryotic gene regulations
• Repetitive DNA
• Coding and non coding gene
• RNA polymerase
• Transcription & translation site
Conclusions
• Regulation of gene expression in eukaryote is
complex than prokaryotes and requires many
regulatory, transcriptional and translational factors.
• The regulation can be seen at many stages – genomic
, pre transcriptional, post transcriptional, pre
translational and post translational levels.
References
• Cell & molecular biology by-
Gerald Karp
• The cell ,fourth addition by-
Geoffrey M. Cooper
Robert E. Hausman
• Gene expression first edition by-
C.B.Powar
• WWW.wikipidia.com.

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Control of eukariyotic genes

  • 1. By KAUSHAL KUMAR SAHU Assistant Professor (Ad Hoc) Department of Biotechnology Govt. Digvijay Autonomous P. G. College Raj-Nandgaon ( C. G. )
  • 2. Synopsis • Introduction • The big question • Evolution of gene regulation • Gene regulation in eukaryotes • Points of control  Packing/unpacking DNA  Transcription  mRNA processing  mRNA transport  Translation  Protein processing  Protein degradation • Difference between eukaryotic & prokaryotic gene expression • Conclusions • References
  • 3. Introduction Gene -Regulation • Expression of genetic information by eukaryotic cell is a multi step process, beginning with transcription of DNA, and ending with a protein that perform a particular function. • Gene expression is the process by which information from a gene is used in the synthesis of a functional gene product.
  • 4. The Big Question….? • How are genes turned on & turned off in eukaryotes ? • How do cell with the same genes differentiate to perform completely different, specialized functions ?
  • 5. Evolution of gene regulation Eukaryotes Multicellular  Evolved to maintain constant internal conditions while facing changing conditions –Homeostasis Regulate body as a whole -Growth and development -Long term processes Specialization -Turn off and on long number of genes
  • 7. Points of control The control of gene expression can occur at any step in pathway from gene to functional protein  Packing/unpacking DNA  Transcription  mRNA processing  mRNA transport  Translation  Protein processing  Protein degradation
  • 8. DNA Packing • How do you fit all that DNA into nucleus ?  DNA coiling &folding  Double helix  Nucleosomes  Chromatin fibers  Looped domain
  • 9. Neucleosomes • “Beads on string ”  First level of DNA packing  Histone protein o 8 protein molecules o Positively charge amino acid o Bind tightly to negatively charge DNA
  • 10. DNA packing as gene control • Degree of packing of DNA regulates transcription  Tightly wrapped around histone  No transcription Heterochromatin –Darker DNA [Tightly packed ]  Genes turned off Euchromatin - Lighter DNA [Loosely packed ]
  • 11. DNA methylation Methylation of DNA block transcriptional factors No transcription - genes turned off Attachment of methyl Group to cytosine Nearly permanent activation of gene
  • 12. Histone acetylation Acetylation of histones unwind DNA  Loosely wrapped around histone • Enable transcription • Genes turned on  Attachment of acetyl group to histone • conformational change in histone protein • Transcription factor have easier access to genes
  • 13. Transcription initiation Control region on DNA  Promoter  Nearby control sequence on DNA  Binding of RNA polymerase & transcription factor  “base” rate of transcription  Enhancer  Distant control sequence on DNA  binding of activator protein  “enhanced “ (high level) rate of transcription
  • 16. Post - transcriptional control Alternative RNA splicing  Variable processing of exons creates a family of protein
  • 17. Regulation of mRNA degradation Life span of mRNA determines amount of protein  mRNA can lost from hours to weeks
  • 18.
  • 19. RNA interference Small interfering RNAs (siRNA) 1.short segment of RNA (21-28) (a) bind to mRNA (b) create section of double-stranded mRNA (c) “death” tag for mRNA (i) Triggers degradation of mRNA 2.cause gene “silencing” (a)post transcriptional control (b)Turn off gene=no protein produce
  • 21. Control of translation Block initiation of translation stage  Regulatory protein attach to 5’ end of mRNA (1) Prevent attach of ribosomal subunit & initiator tRNA (2) Block translation of mRNA to protein
  • 22. Post - translational modification
  • 23. Protein processing and degradation Protein processing  Folding cleaving, adding sugar groups, targeting for transport Protein degradation  Ubiquitin tagging  Proteasome degradation
  • 24. Differences between eukaryotic and prokaryotic gene regulations • Repetitive DNA • Coding and non coding gene • RNA polymerase • Transcription & translation site
  • 25. Conclusions • Regulation of gene expression in eukaryote is complex than prokaryotes and requires many regulatory, transcriptional and translational factors. • The regulation can be seen at many stages – genomic , pre transcriptional, post transcriptional, pre translational and post translational levels.
  • 26. References • Cell & molecular biology by- Gerald Karp • The cell ,fourth addition by- Geoffrey M. Cooper Robert E. Hausman • Gene expression first edition by- C.B.Powar • WWW.wikipidia.com.