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COMSATS Institute of Information Technology, Abbottabad
Course title and code Environmental Biotechnology (BTY 322)
Assignment number 04
Assignment Importance Of Gene Cloning In Forensic Science
Submitted by Zohaib HUSSAIN
Registration number Sp13-bty-001
Submitted To Dr. Sabaz Ali Khan
Date of submission Wednesday, December 16, 2015
1
Importance Of Gene Cloning In Forensic Science
How does forensic identification work?
Any type of organism can be identified by examination of DNA sequences unique to that
species. Identifying individuals within a species is less precise at this time, although when DNA
sequencing technologies progress farther, direct comparison of very large DNA segments, and
possibly even whole genomes, will become feasible and practical and will allow precise
individual identification.
To identify individuals, forensic scientists scan 13 DNA regions that vary from person to person
and use the data to create a DNA profile of that individual (sometimes called a DNA fingerprint).
There is an extremely small chance that another person has the same DNA profile for a particular
set of regions.
Some Examples of DNA Uses for Forensic Identification
 Identify potential suspects whose DNA may match evidence left at crime scenes
 Exonerate persons wrongly accused of crimes
 Identify crime and catastrophe victims
 Establish paternity and other family relationships
 Identify endangered and protected species as an aid to wildlife officials (could be used for
prosecuting poachers)
 Detect bacteria and other organisms that may pollute air, water, soil, and food
 Match organ donors with recipients in transplant programs
 Determine pedigree for seed or livestock breeds
 Authenticate consumables such as caviar and wine
2
Is DNA effective in identifying persons?
DNA identification can be quite effective if used intelligently. Portions of the DNA sequence
that vary the most among humans must be used; also, portions must be large enough to overcome
the fact that human mating is not absolutely random.
Consider the scenario of a crime scene investigation . . .
Assume that type O blood is found at the crime scene. Type O occurs in about 45% of
Americans. If investigators type only for ABO, then finding that the "suspect" in a crime is type
O really doesn't reveal very much.
If, in addition to being type O, the suspect is a blond, and blond hair is found at the crime scene,
then you now have two bits of evidence to suggest who really did it. However, there are a lot of
Type O blonds out there.
With DNA, the same kind of thinking is used; you can look for matches (based on sequence or
on numbers of small repeating units of DNA sequence) at a number of different locations on the
person's genome; one or two (even three) aren't enough to be confident that the suspect is the
right one, but four (sometimes five) are used and a match at all five is rare enough that you (or a
prosecutor or a jury) can be very confident ("beyond a reasonable doubt") that the right person is
accused.
How is DNA typing done?
Only one-tenth of a single percent of DNA (about 3 million bases) differs from one person to the
next. Scientists can use these variable regions to generate a DNA profile of an individual, using
samples from blood, bone, hair, and other body tissues and products.
3
In criminal cases, this generally involves obtaining samples from crime-scene evidence and a
suspect, extracting the DNA, and analyzing it for the presence of a set of specific DNA regions
(markers).
Scientists find the markers in a DNA sample by designing small pieces of DNA (probes) that
will each seek out and bind to a complementary DNA sequence in the sample. A series of probes
bound to a DNA sample creates a distinctive pattern for an individual. Forensic scientists
compare these DNA profiles to determine whether the suspect's sample matches the evidence
sample. A marker by itself usually is not unique to an individual; if, however, two DNA samples
are alike at four or five regions, odds are great that the samples are from the same person.
If the sample profiles don't match, the person did not contribute the DNA at the crime scene.
If the patterns match, the suspect may have contributed the evidence sample. While there is a
chance that someone else has the same DNA profile for a particular probe set, the odds are
exceedingly slim.
He predicted that, DNA chip technology (in which thousands of short DNA sequences are
embedded in a tiny chip) will enable much more rapid, inexpensive analysis using many more
probes, and raising the odds against coincidental matches.
What are some of the DNA technologies used in forensic investigations?
1. Restriction Fragment Length Polymorphism (RFLP)
RFLP is a technique for analyzing the variable lengths of DNA fragments that result from
digesting a DNA sample with a special kind of enzyme. This enzyme, a restriction endonuclease,
cuts DNA at a specific sequence pattern know as a restriction endonuclease recognition site. The
presence or absence of certain recognition sites in a DNA sample generates variable lengths of
4
DNA fragments, which are separated using gel electrophoresis. They are then hybridized with
DNA probes that bind to a complementary DNA sequence in the sample.
RFLP is one of the original applications of DNA analysis to forensic investigation. With the
development of newer, more efficient DNA-analysis techniques, RFLP is not used as much as it
once was because it requires relatively large amounts of DNA. In addition, samples degraded by
environmental factors, such as dirt or mold, do not work well with RFLP.
2. PCR Analysis
PCR (polymerase chain reaction) is used to make millions of exact copies of DNA from a
biological sample. DNA amplification with PCR allows DNA analysis on biological samples as
small as a few skin cells. With RFLP, DNA samples would have to be about the size of a quarter.
The ability of PCR to amplify such tiny quantities of DNA enables even highly degraded
samples to be analyzed. Great care, however, must be taken to prevent contamination with other
biological materials during the identifying, collecting, and preserving of a sample.
3. STR Analysis
Short tandem repeat (STR) technology is used to evaluate specific regions (loci) within nuclear
DNA. Variability in STR regions can be used to distinguish one DNA profile from another. The
Federal Bureau of Investigation (FBI) uses a standard set of 13 specific STR regions for CODIS.
CODIS is a software program that operates local, state, and national databases of DNA profiles
from convicted offenders, unsolved crime scene evidence, and missing persons. The odds that
two individuals will have the same 13-loci DNA profile is about one in one billion.
4. Mitochondrial DNA Analysis
Mitochondrial DNA analysis (mtDNA) can be used to examine the DNA from samples that
cannot be analyzed by RFLP or STR. Nuclear DNA must be extracted from samples for use in
5
RFLP, PCR, and STR; however, mtDNA analysis uses DNA extracted from another cellular
organelle called a mitochondrion. While older biological samples that lack nucleated cellular
material, such as hair, bones, and teeth, cannot be analyzed with STR and RFLP, they can be
analyzed with mtDNA. In the investigation of cases that have gone unsolved for many years,
mtDNA is extremely valuable.
All mothers have the same mitochondrial DNA as their daughters. This is because the
mitochondria of each new embryo comes from the mother's egg cell. The father's sperm
contributes only nuclear DNA. Comparing the mtDNA profile of unidentified remains with the
profile of a potential maternal relative can be an important technique in missing person
investigations.
5. Y-Chromosome Analysis
The Y chromosome is passed directly from father to son, so the analysis of genetic markers on
the Y chromosome is especially useful for tracing relationships among males or for analyzing
biological evidence involving multiple male contributors.
References
1. http://www.aafs.org/
2. http://www.dnai.org/d/
3. https://en.wikipedia.org/wiki/DNA_profiling#Cases
4. http://geneed.nlm.nih.gov/topic_subtopic.php?tid=37
5. http://www.forensicprofiles.com/dna.html

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Importance Of Gene Cloning In Forensic Science

  • 1. 0 COMSATS Institute of Information Technology, Abbottabad Course title and code Environmental Biotechnology (BTY 322) Assignment number 04 Assignment Importance Of Gene Cloning In Forensic Science Submitted by Zohaib HUSSAIN Registration number Sp13-bty-001 Submitted To Dr. Sabaz Ali Khan Date of submission Wednesday, December 16, 2015
  • 2. 1 Importance Of Gene Cloning In Forensic Science How does forensic identification work? Any type of organism can be identified by examination of DNA sequences unique to that species. Identifying individuals within a species is less precise at this time, although when DNA sequencing technologies progress farther, direct comparison of very large DNA segments, and possibly even whole genomes, will become feasible and practical and will allow precise individual identification. To identify individuals, forensic scientists scan 13 DNA regions that vary from person to person and use the data to create a DNA profile of that individual (sometimes called a DNA fingerprint). There is an extremely small chance that another person has the same DNA profile for a particular set of regions. Some Examples of DNA Uses for Forensic Identification  Identify potential suspects whose DNA may match evidence left at crime scenes  Exonerate persons wrongly accused of crimes  Identify crime and catastrophe victims  Establish paternity and other family relationships  Identify endangered and protected species as an aid to wildlife officials (could be used for prosecuting poachers)  Detect bacteria and other organisms that may pollute air, water, soil, and food  Match organ donors with recipients in transplant programs  Determine pedigree for seed or livestock breeds  Authenticate consumables such as caviar and wine
  • 3. 2 Is DNA effective in identifying persons? DNA identification can be quite effective if used intelligently. Portions of the DNA sequence that vary the most among humans must be used; also, portions must be large enough to overcome the fact that human mating is not absolutely random. Consider the scenario of a crime scene investigation . . . Assume that type O blood is found at the crime scene. Type O occurs in about 45% of Americans. If investigators type only for ABO, then finding that the "suspect" in a crime is type O really doesn't reveal very much. If, in addition to being type O, the suspect is a blond, and blond hair is found at the crime scene, then you now have two bits of evidence to suggest who really did it. However, there are a lot of Type O blonds out there. With DNA, the same kind of thinking is used; you can look for matches (based on sequence or on numbers of small repeating units of DNA sequence) at a number of different locations on the person's genome; one or two (even three) aren't enough to be confident that the suspect is the right one, but four (sometimes five) are used and a match at all five is rare enough that you (or a prosecutor or a jury) can be very confident ("beyond a reasonable doubt") that the right person is accused. How is DNA typing done? Only one-tenth of a single percent of DNA (about 3 million bases) differs from one person to the next. Scientists can use these variable regions to generate a DNA profile of an individual, using samples from blood, bone, hair, and other body tissues and products.
  • 4. 3 In criminal cases, this generally involves obtaining samples from crime-scene evidence and a suspect, extracting the DNA, and analyzing it for the presence of a set of specific DNA regions (markers). Scientists find the markers in a DNA sample by designing small pieces of DNA (probes) that will each seek out and bind to a complementary DNA sequence in the sample. A series of probes bound to a DNA sample creates a distinctive pattern for an individual. Forensic scientists compare these DNA profiles to determine whether the suspect's sample matches the evidence sample. A marker by itself usually is not unique to an individual; if, however, two DNA samples are alike at four or five regions, odds are great that the samples are from the same person. If the sample profiles don't match, the person did not contribute the DNA at the crime scene. If the patterns match, the suspect may have contributed the evidence sample. While there is a chance that someone else has the same DNA profile for a particular probe set, the odds are exceedingly slim. He predicted that, DNA chip technology (in which thousands of short DNA sequences are embedded in a tiny chip) will enable much more rapid, inexpensive analysis using many more probes, and raising the odds against coincidental matches. What are some of the DNA technologies used in forensic investigations? 1. Restriction Fragment Length Polymorphism (RFLP) RFLP is a technique for analyzing the variable lengths of DNA fragments that result from digesting a DNA sample with a special kind of enzyme. This enzyme, a restriction endonuclease, cuts DNA at a specific sequence pattern know as a restriction endonuclease recognition site. The presence or absence of certain recognition sites in a DNA sample generates variable lengths of
  • 5. 4 DNA fragments, which are separated using gel electrophoresis. They are then hybridized with DNA probes that bind to a complementary DNA sequence in the sample. RFLP is one of the original applications of DNA analysis to forensic investigation. With the development of newer, more efficient DNA-analysis techniques, RFLP is not used as much as it once was because it requires relatively large amounts of DNA. In addition, samples degraded by environmental factors, such as dirt or mold, do not work well with RFLP. 2. PCR Analysis PCR (polymerase chain reaction) is used to make millions of exact copies of DNA from a biological sample. DNA amplification with PCR allows DNA analysis on biological samples as small as a few skin cells. With RFLP, DNA samples would have to be about the size of a quarter. The ability of PCR to amplify such tiny quantities of DNA enables even highly degraded samples to be analyzed. Great care, however, must be taken to prevent contamination with other biological materials during the identifying, collecting, and preserving of a sample. 3. STR Analysis Short tandem repeat (STR) technology is used to evaluate specific regions (loci) within nuclear DNA. Variability in STR regions can be used to distinguish one DNA profile from another. The Federal Bureau of Investigation (FBI) uses a standard set of 13 specific STR regions for CODIS. CODIS is a software program that operates local, state, and national databases of DNA profiles from convicted offenders, unsolved crime scene evidence, and missing persons. The odds that two individuals will have the same 13-loci DNA profile is about one in one billion. 4. Mitochondrial DNA Analysis Mitochondrial DNA analysis (mtDNA) can be used to examine the DNA from samples that cannot be analyzed by RFLP or STR. Nuclear DNA must be extracted from samples for use in
  • 6. 5 RFLP, PCR, and STR; however, mtDNA analysis uses DNA extracted from another cellular organelle called a mitochondrion. While older biological samples that lack nucleated cellular material, such as hair, bones, and teeth, cannot be analyzed with STR and RFLP, they can be analyzed with mtDNA. In the investigation of cases that have gone unsolved for many years, mtDNA is extremely valuable. All mothers have the same mitochondrial DNA as their daughters. This is because the mitochondria of each new embryo comes from the mother's egg cell. The father's sperm contributes only nuclear DNA. Comparing the mtDNA profile of unidentified remains with the profile of a potential maternal relative can be an important technique in missing person investigations. 5. Y-Chromosome Analysis The Y chromosome is passed directly from father to son, so the analysis of genetic markers on the Y chromosome is especially useful for tracing relationships among males or for analyzing biological evidence involving multiple male contributors. References 1. http://www.aafs.org/ 2. http://www.dnai.org/d/ 3. https://en.wikipedia.org/wiki/DNA_profiling#Cases 4. http://geneed.nlm.nih.gov/topic_subtopic.php?tid=37 5. http://www.forensicprofiles.com/dna.html