F. tularensis subspecies exhibit abroad host ranges. Diseases caused by this species is sub-divided into several forms, based on clinical presentation.
Francisella tularensis is a pathogenic species of Gram-negative coccobacillus, an aerobic bacterium. It is nonspore-forming, nonmotile, and the causative agent of tularemia, the pneumonic form of which is often lethal without treatment.
Here's a little information about a very common pathogen in human diseases Streptococcus pyogenes. This presentation consists of the history of the organism, its introduction, its morphology, the cell antigens and proteins, the diseases caused by this organism its diagnosis and treatment. I hope it is helpful for the people studying medical microbiology.
This document provides information on Bordetella, the bacteria that causes whooping cough. It discusses the three main Bordetella species (B. pertussis, B. parapertussis, B. bronchiseptica), their morphology, culture characteristics, antigenic structure, pathogenesis of whooping cough, laboratory diagnosis, and prophylaxis with DPT vaccine. The key points are that B. pertussis causes the most common form of whooping cough in children, has a distinctive paroxysmal cough stage, and is diagnosed through culture or PCR of respiratory samples and confirmed with specific staining or agglutination.
1. Actinomyces and Nocardia are filamentous, Gram-positive bacteria found in the environment and as normal flora in humans.
2. Actinomyces causes cervicofacial and abdominal actinomycosis in humans through tissue invasion following trauma or medical procedures. Diagnosis involves identifying sulfur granules in biopsy specimens.
3. Nocardia is an opportunistic pathogen that can cause pulmonary, cutaneous, or disseminated nocardiosis through inhalation or skin inoculation. It is an important cause of infection in immunocompromised individuals.
Yersinia are gram-negative rods that can cause human disease. The document discusses Yersinia pestis, which causes plague, and Yersinia enterocolitica and Y. pseudotuberculosis, which cause human diarrheal diseases. Y. pestis is transmitted by fleas and causes a fatal infection if not treated with antibiotics like streptomycin. Y. enterocolitica and Y. pseudotuberculosis are transmitted through contaminated food or water and commonly cause self-limiting gastrointestinal infections but can occasionally spread systemically and cause more serious infections.
There are four medically important Clostridium species: C. tetani, C. botulinum, C. perfringens, and C. difficile. C. tetani causes tetanus through toxins that block inhibitory neurotransmitters. C. botulinum causes botulism by toxins blocking acetylcholine release. C. perfringens can cause gas gangrene or food poisoning depending on entry site, and produces toxins and enzymes damaging tissues. C. difficile causes pseudomembranous colitis through toxins that damage intestinal cells when normal flora is suppressed.
Haemophilus is a genus of bacteria that includes species normally found in the human respiratory tract as well as pathogenic species. H. influenzae is the most clinically important species and is a cause of pneumonia, septic arthritis, epiglottitis, and meningitis. H. influenzae is a small, non-motile, gram-negative coccobacillus that requires both Factor X and V for growth. Serotype b of H. influenzae causes the majority of invasive disease and was an important cause of childhood meningitis prior to the introduction of the Hib vaccine.
Francisella tularensis is a pathogenic species of Gram-negative coccobacillus, an aerobic bacterium. It is nonspore-forming, nonmotile, and the causative agent of tularemia, the pneumonic form of which is often lethal without treatment.
Here's a little information about a very common pathogen in human diseases Streptococcus pyogenes. This presentation consists of the history of the organism, its introduction, its morphology, the cell antigens and proteins, the diseases caused by this organism its diagnosis and treatment. I hope it is helpful for the people studying medical microbiology.
This document provides information on Bordetella, the bacteria that causes whooping cough. It discusses the three main Bordetella species (B. pertussis, B. parapertussis, B. bronchiseptica), their morphology, culture characteristics, antigenic structure, pathogenesis of whooping cough, laboratory diagnosis, and prophylaxis with DPT vaccine. The key points are that B. pertussis causes the most common form of whooping cough in children, has a distinctive paroxysmal cough stage, and is diagnosed through culture or PCR of respiratory samples and confirmed with specific staining or agglutination.
1. Actinomyces and Nocardia are filamentous, Gram-positive bacteria found in the environment and as normal flora in humans.
2. Actinomyces causes cervicofacial and abdominal actinomycosis in humans through tissue invasion following trauma or medical procedures. Diagnosis involves identifying sulfur granules in biopsy specimens.
3. Nocardia is an opportunistic pathogen that can cause pulmonary, cutaneous, or disseminated nocardiosis through inhalation or skin inoculation. It is an important cause of infection in immunocompromised individuals.
Yersinia are gram-negative rods that can cause human disease. The document discusses Yersinia pestis, which causes plague, and Yersinia enterocolitica and Y. pseudotuberculosis, which cause human diarrheal diseases. Y. pestis is transmitted by fleas and causes a fatal infection if not treated with antibiotics like streptomycin. Y. enterocolitica and Y. pseudotuberculosis are transmitted through contaminated food or water and commonly cause self-limiting gastrointestinal infections but can occasionally spread systemically and cause more serious infections.
There are four medically important Clostridium species: C. tetani, C. botulinum, C. perfringens, and C. difficile. C. tetani causes tetanus through toxins that block inhibitory neurotransmitters. C. botulinum causes botulism by toxins blocking acetylcholine release. C. perfringens can cause gas gangrene or food poisoning depending on entry site, and produces toxins and enzymes damaging tissues. C. difficile causes pseudomembranous colitis through toxins that damage intestinal cells when normal flora is suppressed.
Haemophilus is a genus of bacteria that includes species normally found in the human respiratory tract as well as pathogenic species. H. influenzae is the most clinically important species and is a cause of pneumonia, septic arthritis, epiglottitis, and meningitis. H. influenzae is a small, non-motile, gram-negative coccobacillus that requires both Factor X and V for growth. Serotype b of H. influenzae causes the majority of invasive disease and was an important cause of childhood meningitis prior to the introduction of the Hib vaccine.
Yersinia pestis is a gram-negative rod that causes plague. It is primarily transmitted between rodents like rats, mice and squirrels via flea bites. Humans are accidental hosts. There are three main forms of plague infection: bubonic plague causes swollen lymph nodes, septicemic plague causes fever and hypotension, and pneumonic plague causes cough and bloody sputum. Yersinia enterocolitica and Y. pseudotuberculosis can cause gastrointestinal illness in humans after consuming contaminated food, especially pork.
- Clostridium perfringens is a gram-positive, anaerobic, spore-forming bacillus that can cause gas gangrene. It produces several potent toxins and enzymes.
- It forms central or subterminal spores and appears as large bacilli on microscopy. It turns meat pink on culture but does not digest it. It causes target hemolysis on blood agar.
- Gas gangrene is a serious infection caused by C. perfringens that involves muscle tissue necrosis and gas formation. It presents with increasing pain, edema, and tissue blackening. Other Clostridium species such as C. septicum can also cause gas gangrene.
Clostridium perfringens is a gram-positive, anaerobic bacterium that can cause gas gangrene. It forms spores that allow it to survive in soil and intestines. C. perfringens produces several toxins that damage tissues and cause diseases like gas gangrene. The bacterium thrives under low-oxygen conditions in dead or damaged tissue where it releases toxins and enzymes that destroy muscle and skin. Its toxins and enzymes damage cells and spread the infection, resulting in tissue necrosis if not treated with antibiotics.
Yersinia and Pasteurella are important bacterial pathogens. Yersinia pestis causes plague via transmission from rodents and their fleas to humans. It can cause bubonic, septicemic or pneumonic plague. Yersinia enterocolitica and Y. pseudotuberculosis can cause gastroenteritis and mesenteric lymphadenitis via the fecal-oral route. Pasteurella multocida is a zoonotic pathogen that can cause abscesses and meningitis in rare cases of human infection. Laboratory diagnosis involves culture, staining and serology of specimens depending on the suspected infection. Control relies on surveillance, treatment of cases, and measures to reduce rodent and flea
Pasteurella are gram-negative coccobacilli or rods that are facultative anaerobes and normal flora of the respiratory tracts of many animals. Pasteurella multocida commonly causes infections in animals and can infect humans through animal bites or contact. P. multocida is the most frequent human isolate and causes wound infections, cellulitis, bone/joint infections, and respiratory infections. Identification involves gram staining, culture on blood agar showing gray colonies within 24 hours, and biochemical tests showing oxidase and urease positive results.
This document discusses Streptococcus bacteria, including Streptococcus pyogenes (Group A Strep). Key points:
- S. pyogenes is a Gram-positive coccus that forms chains and produces beta hemolysis on blood agar. It requires enriched media and is a facultative anaerobe.
- Virulence factors include M protein, streptokinase, hyaluronidase, and pyrogenic exotoxins. M protein determines serotype and virulence. Exotoxins cause scarlet fever rash and toxic shock syndrome.
- Diseases include pharyngitis, impetigo, necrotizing fasciitis, rheumatic fever, glomerul
This document provides information on the Bordetella genus of bacteria, including B. pertussis, B. parapertussis, B. bronchiseptica, and B. avium. It describes their morphology, culture characteristics, virulence factors, mechanisms of infection, clinical manifestations of whooping cough caused by B. pertussis, epidemiology, laboratory diagnosis, treatment, and prophylaxis. Key points include that B. pertussis causes the most common form of whooping cough in humans and produces virulence factors like pertussis toxin and adenylate cyclase toxin that contribute to disease pathogenesis.
Clostridium perfringens is a Gram-positive, anaerobic bacterium that can cause gas gangrene and food poisoning in humans. It is a normal inhabitant of the intestines that enters the body through wounds or contaminated food. C. perfringens produces several potent toxins that contribute to disease pathogenesis. It is classified into types A-E based on toxin production. Type A causes the majority of food poisoning cases. Gas gangrene results from the proliferation of C. perfringens and other bacteria in wounds producing toxins that damage muscle tissue. Prompt diagnosis and surgical debridement combined with antibiotics are important for treatment.
This document summarizes several bacterial genera - Yersinia, Pasteurella, and Francisella. It describes their general properties, species, diseases caused, morphology, culture characteristics, biochemical reactions, epidemiology, pathogenesis, laboratory diagnosis, treatment and prophylaxis. Key points include Yersinia pestis causing plague, Pasteurella multocida causing septicemia, and Francisella tularensis causing tularemia.
Corynebacterium diphtheriae is a gram-positive bacterium that causes diphtheria. It is transmitted through respiratory droplets and produces a potent exotoxin. The exotoxin inhibits protein synthesis and causes severe illness. Active immunization with diphtheria toxoid vaccine provides protection. Laboratory diagnosis involves isolating C. diphtheriae from lesions and confirming toxin production. Treatment involves antitoxin administration and antibiotics like penicillin. Complications can include respiratory obstruction, paralysis, and death.
This document provides information on the bacteria Neisseria gonorrhoeae and Neisseria meningitidis. It discusses their classification, characteristics, pathogenicity, epidemiology, laboratory diagnosis, treatment and prevention. Key differences between the two pathogens are that N. gonorrhoeae causes the sexually transmitted infection gonorrhea, while N. meningitidis can cause meningitis. Laboratory diagnosis involves culturing samples on selective media and identifying colonies based on morphology and biochemical tests. Treatment of gonorrhea now involves ceftriaxone or ciprofloxacin plus other antibiotics due to emerging resistance.
This document discusses Cryptococcus neoformans, a pathogenic yeast that can cause lung or brain infections in humans. It naturally lives in soil and bird droppings. There are four serotypes that can infect humans, with serotype A causing most infections. It has both asexual and sexual life cycles. Key virulence factors include its polysaccharide capsule and ability to grow at human body temperature. Infection usually occurs via inhalation and can disseminate from the lungs to the brain. Risk groups include those with weakened immune systems. Diagnosis involves examining samples under the microscope or culturing the organism. Treatment involves antifungal drugs like amphotericin B and fluconazole.
This document provides information about histoplasmosis, including its characteristics, pathogenesis, types, clinical presentation, and laboratory diagnosis. It can be summarized as follows:
1. Histoplasmosis is caused by the dimorphic fungus Histoplasma capsulatum, which exists in both a mycelial and yeast form. It is found worldwide in soil contaminated with bird or bat droppings.
2. Infection typically occurs via inhalation of yeast cells into the lungs. It can cause pulmonary or disseminated disease, spreading to organs in immunocompromised individuals.
3. Laboratory diagnosis involves direct examination of samples for yeast cells, culture of the fungus, and serological tests like complement fixation
Scientists divide Gram-positive bacilli into spore-forming and non-spore-forming genera. The two spore-forming genera are Bacillus and Clostridium. Bacillus forms endospores centrally and is aerobic. Important pathogenic Bacillus species include B. anthracis and B. cereus. B. anthracis causes anthrax through its toxin and spores. Clostridium forms terminal or subterminal spores and is anaerobic. Important pathogenic Clostridium species are C. perfringens, C. tetani, and C. botulinum, which cause myonecrosis, tetanus, and botulism respectively through their tox
Actinomycetes and Nocardia, Bacteria but similar to fungi usually because of its morphological feature of forming a branching filament network, causing Actinomycosis, Actinomycetoma, Farmer's Lung, etc. Demonstrated under microscope by Gram's stain and ZN staining. Cultured on BHI and Thioglycolate broth. Characteristically produce Supher granules. Penicillin is the drug of choice in allergic to penicillin can be replaced by Erythromycin or Tetracycline. In worst cases surgical removal of affected tissue required.
Bacillus is a genus of rod-shaped, Gram-positive bacteria that can form dormant endospores. The document focuses on Bacillus anthracis, which causes anthrax. It describes the morphology, cultural characteristics, virulence factors, and methods of diagnosis and prevention of B. anthracis. Key points include that B. anthracis forms encapsulated, non-motile rods and terminal spores. The anthrax toxins are composed of lethal factor, edema factor, and protective antigen, which combine to cause disease. Diagnosis involves microscopy, culture, and serology. Prevention for humans involves vaccination with anthrax toxoid and occupational hygiene, while animals are vaccinated with attenuated spore
This document provides information on Neisseria meningitidis and Neisseria gonorrhoeae, including their morphology, culture characteristics, biochemical properties, virulence factors, pathogenesis, laboratory diagnosis, treatment and prevention. N. meningitidis can cause meningitis and meningococcemia, while N. gonorrhoeae causes gonorrhea, neonatal conjunctivitis and pelvic inflammatory disease. Both are Gram-negative diplococci that require special culture conditions and produce oxidase. Laboratory diagnosis involves Gram stain, culture, and tests for oxidase and sugar fermentation patterns. Treatment is generally with penicillin or related antibiotics.
The document discusses Mycobacterium, the genus of bacteria that includes Mycobacterium tuberculosis which causes tuberculosis. It provides details on the epidemiology of tuberculosis, noting it is one of the top infectious disease burdens globally and in Tanzania specifically. It describes the pathogenesis and clinical presentation of tuberculosis as well as methods for diagnosis and treatment.
1. Superficial mycoses involve infections of the skin and its appendages by fungi including Malassezia species, dermatophytes, and others.
2. Common conditions include pityriasis versicolor caused by Malassezia furfur presenting as discolored patches, and tinea infections like tinea corporis caused by dermatophytes appearing as scaly rings.
3. Laboratory diagnosis involves potassium hydroxide microscopy of skin and nail samples to visualize fungal elements, and culture to isolate and identify the causative agent. Topical and oral antifungal drugs are used for treatment.
Streptococcus pneumoniae, commonly known as pneumococcus, is a Gram-positive bacterium that is a major cause of pneumonia, meningitis, and sepsis. It was first isolated in 1881 by George Sternberg and Louis Pasteur. There are over 90 known serotypes of S. pneumoniae. It is a facultative anaerobe that is normally found in the upper respiratory tract of humans. Virulence factors include an antiphagocytic polysaccharide capsule and pneumolysin toxin. Diagnosis involves culture and identification of the bacterium from clinical specimens. Treatment involves antibiotics like penicillin, with vaccines available to help prevent pneumococcal disease.
Toxoplasmosis is considered one of the neglected parasitic infections of the United States, a group of five parasitic diseases that have been targeted by CDC for public health action.Q fever is a disease caused by the bacteria Coxiella burnetii. This bacteria naturally infects some animals, such as goats, sheep, and cattle. C. burnetii bacteria are found in the birth products (i.e. placenta, amniotic fluid), urine, feces, and milk of infected animals.
This document discusses two zoonotic bacterial infections: anthrax and brucellosis. It provides details on the morphology, culture characteristics, virulence factors, epidemiology and pathogenesis of Bacillus anthracis, the causative agent of anthrax. It also discusses the laboratory diagnosis and prevention of anthrax. Similarly, it covers the morphology, culture characteristics, antigenic structure, biochemical profile, pathogenic species and clinical manifestations of Brucella spp., the causative agents of brucellosis. The document concludes with details on the laboratory diagnosis and prevention of brucellosis.
Yersinia pestis is a gram-negative rod that causes plague. It is primarily transmitted between rodents like rats, mice and squirrels via flea bites. Humans are accidental hosts. There are three main forms of plague infection: bubonic plague causes swollen lymph nodes, septicemic plague causes fever and hypotension, and pneumonic plague causes cough and bloody sputum. Yersinia enterocolitica and Y. pseudotuberculosis can cause gastrointestinal illness in humans after consuming contaminated food, especially pork.
- Clostridium perfringens is a gram-positive, anaerobic, spore-forming bacillus that can cause gas gangrene. It produces several potent toxins and enzymes.
- It forms central or subterminal spores and appears as large bacilli on microscopy. It turns meat pink on culture but does not digest it. It causes target hemolysis on blood agar.
- Gas gangrene is a serious infection caused by C. perfringens that involves muscle tissue necrosis and gas formation. It presents with increasing pain, edema, and tissue blackening. Other Clostridium species such as C. septicum can also cause gas gangrene.
Clostridium perfringens is a gram-positive, anaerobic bacterium that can cause gas gangrene. It forms spores that allow it to survive in soil and intestines. C. perfringens produces several toxins that damage tissues and cause diseases like gas gangrene. The bacterium thrives under low-oxygen conditions in dead or damaged tissue where it releases toxins and enzymes that destroy muscle and skin. Its toxins and enzymes damage cells and spread the infection, resulting in tissue necrosis if not treated with antibiotics.
Yersinia and Pasteurella are important bacterial pathogens. Yersinia pestis causes plague via transmission from rodents and their fleas to humans. It can cause bubonic, septicemic or pneumonic plague. Yersinia enterocolitica and Y. pseudotuberculosis can cause gastroenteritis and mesenteric lymphadenitis via the fecal-oral route. Pasteurella multocida is a zoonotic pathogen that can cause abscesses and meningitis in rare cases of human infection. Laboratory diagnosis involves culture, staining and serology of specimens depending on the suspected infection. Control relies on surveillance, treatment of cases, and measures to reduce rodent and flea
Pasteurella are gram-negative coccobacilli or rods that are facultative anaerobes and normal flora of the respiratory tracts of many animals. Pasteurella multocida commonly causes infections in animals and can infect humans through animal bites or contact. P. multocida is the most frequent human isolate and causes wound infections, cellulitis, bone/joint infections, and respiratory infections. Identification involves gram staining, culture on blood agar showing gray colonies within 24 hours, and biochemical tests showing oxidase and urease positive results.
This document discusses Streptococcus bacteria, including Streptococcus pyogenes (Group A Strep). Key points:
- S. pyogenes is a Gram-positive coccus that forms chains and produces beta hemolysis on blood agar. It requires enriched media and is a facultative anaerobe.
- Virulence factors include M protein, streptokinase, hyaluronidase, and pyrogenic exotoxins. M protein determines serotype and virulence. Exotoxins cause scarlet fever rash and toxic shock syndrome.
- Diseases include pharyngitis, impetigo, necrotizing fasciitis, rheumatic fever, glomerul
This document provides information on the Bordetella genus of bacteria, including B. pertussis, B. parapertussis, B. bronchiseptica, and B. avium. It describes their morphology, culture characteristics, virulence factors, mechanisms of infection, clinical manifestations of whooping cough caused by B. pertussis, epidemiology, laboratory diagnosis, treatment, and prophylaxis. Key points include that B. pertussis causes the most common form of whooping cough in humans and produces virulence factors like pertussis toxin and adenylate cyclase toxin that contribute to disease pathogenesis.
Clostridium perfringens is a Gram-positive, anaerobic bacterium that can cause gas gangrene and food poisoning in humans. It is a normal inhabitant of the intestines that enters the body through wounds or contaminated food. C. perfringens produces several potent toxins that contribute to disease pathogenesis. It is classified into types A-E based on toxin production. Type A causes the majority of food poisoning cases. Gas gangrene results from the proliferation of C. perfringens and other bacteria in wounds producing toxins that damage muscle tissue. Prompt diagnosis and surgical debridement combined with antibiotics are important for treatment.
This document summarizes several bacterial genera - Yersinia, Pasteurella, and Francisella. It describes their general properties, species, diseases caused, morphology, culture characteristics, biochemical reactions, epidemiology, pathogenesis, laboratory diagnosis, treatment and prophylaxis. Key points include Yersinia pestis causing plague, Pasteurella multocida causing septicemia, and Francisella tularensis causing tularemia.
Corynebacterium diphtheriae is a gram-positive bacterium that causes diphtheria. It is transmitted through respiratory droplets and produces a potent exotoxin. The exotoxin inhibits protein synthesis and causes severe illness. Active immunization with diphtheria toxoid vaccine provides protection. Laboratory diagnosis involves isolating C. diphtheriae from lesions and confirming toxin production. Treatment involves antitoxin administration and antibiotics like penicillin. Complications can include respiratory obstruction, paralysis, and death.
This document provides information on the bacteria Neisseria gonorrhoeae and Neisseria meningitidis. It discusses their classification, characteristics, pathogenicity, epidemiology, laboratory diagnosis, treatment and prevention. Key differences between the two pathogens are that N. gonorrhoeae causes the sexually transmitted infection gonorrhea, while N. meningitidis can cause meningitis. Laboratory diagnosis involves culturing samples on selective media and identifying colonies based on morphology and biochemical tests. Treatment of gonorrhea now involves ceftriaxone or ciprofloxacin plus other antibiotics due to emerging resistance.
This document discusses Cryptococcus neoformans, a pathogenic yeast that can cause lung or brain infections in humans. It naturally lives in soil and bird droppings. There are four serotypes that can infect humans, with serotype A causing most infections. It has both asexual and sexual life cycles. Key virulence factors include its polysaccharide capsule and ability to grow at human body temperature. Infection usually occurs via inhalation and can disseminate from the lungs to the brain. Risk groups include those with weakened immune systems. Diagnosis involves examining samples under the microscope or culturing the organism. Treatment involves antifungal drugs like amphotericin B and fluconazole.
This document provides information about histoplasmosis, including its characteristics, pathogenesis, types, clinical presentation, and laboratory diagnosis. It can be summarized as follows:
1. Histoplasmosis is caused by the dimorphic fungus Histoplasma capsulatum, which exists in both a mycelial and yeast form. It is found worldwide in soil contaminated with bird or bat droppings.
2. Infection typically occurs via inhalation of yeast cells into the lungs. It can cause pulmonary or disseminated disease, spreading to organs in immunocompromised individuals.
3. Laboratory diagnosis involves direct examination of samples for yeast cells, culture of the fungus, and serological tests like complement fixation
Scientists divide Gram-positive bacilli into spore-forming and non-spore-forming genera. The two spore-forming genera are Bacillus and Clostridium. Bacillus forms endospores centrally and is aerobic. Important pathogenic Bacillus species include B. anthracis and B. cereus. B. anthracis causes anthrax through its toxin and spores. Clostridium forms terminal or subterminal spores and is anaerobic. Important pathogenic Clostridium species are C. perfringens, C. tetani, and C. botulinum, which cause myonecrosis, tetanus, and botulism respectively through their tox
Actinomycetes and Nocardia, Bacteria but similar to fungi usually because of its morphological feature of forming a branching filament network, causing Actinomycosis, Actinomycetoma, Farmer's Lung, etc. Demonstrated under microscope by Gram's stain and ZN staining. Cultured on BHI and Thioglycolate broth. Characteristically produce Supher granules. Penicillin is the drug of choice in allergic to penicillin can be replaced by Erythromycin or Tetracycline. In worst cases surgical removal of affected tissue required.
Bacillus is a genus of rod-shaped, Gram-positive bacteria that can form dormant endospores. The document focuses on Bacillus anthracis, which causes anthrax. It describes the morphology, cultural characteristics, virulence factors, and methods of diagnosis and prevention of B. anthracis. Key points include that B. anthracis forms encapsulated, non-motile rods and terminal spores. The anthrax toxins are composed of lethal factor, edema factor, and protective antigen, which combine to cause disease. Diagnosis involves microscopy, culture, and serology. Prevention for humans involves vaccination with anthrax toxoid and occupational hygiene, while animals are vaccinated with attenuated spore
This document provides information on Neisseria meningitidis and Neisseria gonorrhoeae, including their morphology, culture characteristics, biochemical properties, virulence factors, pathogenesis, laboratory diagnosis, treatment and prevention. N. meningitidis can cause meningitis and meningococcemia, while N. gonorrhoeae causes gonorrhea, neonatal conjunctivitis and pelvic inflammatory disease. Both are Gram-negative diplococci that require special culture conditions and produce oxidase. Laboratory diagnosis involves Gram stain, culture, and tests for oxidase and sugar fermentation patterns. Treatment is generally with penicillin or related antibiotics.
The document discusses Mycobacterium, the genus of bacteria that includes Mycobacterium tuberculosis which causes tuberculosis. It provides details on the epidemiology of tuberculosis, noting it is one of the top infectious disease burdens globally and in Tanzania specifically. It describes the pathogenesis and clinical presentation of tuberculosis as well as methods for diagnosis and treatment.
1. Superficial mycoses involve infections of the skin and its appendages by fungi including Malassezia species, dermatophytes, and others.
2. Common conditions include pityriasis versicolor caused by Malassezia furfur presenting as discolored patches, and tinea infections like tinea corporis caused by dermatophytes appearing as scaly rings.
3. Laboratory diagnosis involves potassium hydroxide microscopy of skin and nail samples to visualize fungal elements, and culture to isolate and identify the causative agent. Topical and oral antifungal drugs are used for treatment.
Streptococcus pneumoniae, commonly known as pneumococcus, is a Gram-positive bacterium that is a major cause of pneumonia, meningitis, and sepsis. It was first isolated in 1881 by George Sternberg and Louis Pasteur. There are over 90 known serotypes of S. pneumoniae. It is a facultative anaerobe that is normally found in the upper respiratory tract of humans. Virulence factors include an antiphagocytic polysaccharide capsule and pneumolysin toxin. Diagnosis involves culture and identification of the bacterium from clinical specimens. Treatment involves antibiotics like penicillin, with vaccines available to help prevent pneumococcal disease.
Toxoplasmosis is considered one of the neglected parasitic infections of the United States, a group of five parasitic diseases that have been targeted by CDC for public health action.Q fever is a disease caused by the bacteria Coxiella burnetii. This bacteria naturally infects some animals, such as goats, sheep, and cattle. C. burnetii bacteria are found in the birth products (i.e. placenta, amniotic fluid), urine, feces, and milk of infected animals.
This document discusses two zoonotic bacterial infections: anthrax and brucellosis. It provides details on the morphology, culture characteristics, virulence factors, epidemiology and pathogenesis of Bacillus anthracis, the causative agent of anthrax. It also discusses the laboratory diagnosis and prevention of anthrax. Similarly, it covers the morphology, culture characteristics, antigenic structure, biochemical profile, pathogenic species and clinical manifestations of Brucella spp., the causative agents of brucellosis. The document concludes with details on the laboratory diagnosis and prevention of brucellosis.
Francisella tularensis is a small, Gram-negative coccobacillus that causes the disease tularemia. It has four subspecies with subspecies tularensis being the most virulent. It is transmitted to humans via insect bites or contact with infected animals. Clinical manifestations vary depending on the route of infection but include ulceroglandular tularemia and pneumonic tularemia. Diagnosis involves culture on selective media, staining, and antibody detection. Treatment includes gentamicin or doxycycline. Yersinia pestis is the causative agent of plague and exists in sylvatic and domestic cycles involving various reservoirs and vectors. Clinical forms include b
This document summarizes information about Trypanosoma parasites and the diseases they cause. It discusses:
1) Trypanosoma brucei, which causes sleeping sickness in humans, and exists as two subspecies transmitted by tsetse flies. 2) The life cycles of T. brucei within the tsetse fly and human host. 3) Signs and symptoms of sleeping sickness in humans, which can develop over many years and lead to death if untreated. 4) Trypanosoma cruzi, which causes Chagas disease and is transmitted by triatomine bugs in Central and South America.
Brief description of nematode strongyloides stercoralis and its pathogenesisNegash Alamin
Strongyloides stercoralis is a nematode parasite that can cause strongyloidiasis. It has both free-living and parasitic lifecycles. In its parasitic form, the female resides in the small intestine where it lays eggs. The eggs hatch into larvae that can infect other hosts or develop into free-living adults. This direct lifecycle allows it to persist long-term in the same host through autoinfection. Heavy infections can spread through the lungs and cause symptoms like diarrhea, coughing, and rashes. Immunocompromised individuals are most at risk for potentially fatal disseminated strongyloidiasis.
Strongyloides is a parasitic roundworm infection that was first described in French troops in Vietnam in the late 19th century. It is most common in tropical areas. Most infections are asymptomatic, but some can become severe or critical if left untreated. The parasite enters the body through exposed skin and has a complex life cycle involving an internal autoinfection that can cause chronic or disseminated infections in immunosuppressed individuals. Diagnosis is usually by microscopic identification of larvae in stool samples. Treatment is recommended for all infected individuals due to risk of severe disease.
Rickettsiae and Chlamydiae are obligate intracellular bacteria that can cause disease in humans and animals. Rickettsiae include genera that are transmitted by arthropods like ticks and fleas, and parasites of gut cells or white blood cells. Chlamydiae have a unique life cycle alternating between infectious elementary bodies and intracellular reticulate bodies, and can cause respiratory diseases as well as ocular and urogenital infections in humans. Both are treated with tetracycline or erythromycin, and control relies on prevention of transmission from arthropod vectors or infected animals.
This document lists the names of 18 students. It then provides information about medical microbiology, including that it deals with pathogenic microorganisms and their interactions with humans as causes of infectious disease. It discusses the main types of microbial pathogens including viruses, bacteria, fungi and parasites. It then focuses on Staphylococcus bacteria, describing what it is, types like Staphylococcus aureus, risks of infection, who is most susceptible, and ways infection can occur like through the skin or bloodstream. It provides details on structure, classification, natural habitats, pathogenesis, host defenses and treatment of Staphylococcus infections.
Staphylococci are gram positive cocci that occur in grape-like clusters. They can be classified based on coagulase production into coagulase positive and negative species. Staphylococcus aureus is a common pathogen that causes a variety of infections and intoxications in humans. It produces several virulence factors like enzymes and toxins. Laboratory diagnosis involves culture and identification using biochemical tests and antibiotic sensitivity testing. Treatment involves antibiotics like penicillin and methicillin, with vancomycin used for MRSA infections.
This document summarizes the genus Bacillus. It describes Bacillus as aerobic or facultative anaerobic, endospore-forming bacteria. Over 200 Bacillus species are known, including B. anthracis, B. cereus, B. subtilis, and B. licheniformis. B. anthracis causes anthrax in humans and animals. It produces an antiphagocytic capsule and lethal/edema toxins encoded on plasmids. The document provides details on the morphology, habitat, pathogenesis and diagnosis of B. anthracis and discusses prevention and treatment of anthrax.
1. Salmonella is a major cause of foodborne illness worldwide. It can cause gastroenteritis through ingestion of contaminated food or water.
2. When Salmonella is ingested, it is able to penetrate the epithelial cells of the intestine and migrate to the lamina propria, multiplying in lymphoid follicles and causing inflammation. This stimulates fluid secretion and diarrhea.
3. Laboratory diagnosis of Salmonella infection involves culturing specimens from foods, stool, vomit or organs in nutrient media and examining the isolates for their cultural, serological and biological properties to identify the Salmonella species.
Spirochetes. Borrelia & Leptospira. Diagnosis of Relapsing fever, Lyme diseas...Eneutron
This document discusses the classification, biological characteristics, epidemiology, pathogenesis, and laboratory diagnostics of Borrelia, Leptospira, and the diseases they cause. It notes that Borrelia species cause relapsing fever and Lyme disease, which are transmitted by lice or ticks. Leptospira interrogans causes leptospirosis, which is transmitted through contact with infected animal urine. The document describes the morphology, cultivation, antigenic structures, and resistance of these pathogens. It also discusses the epidemiology, pathogenesis, stages, and laboratory diagnosis of the diseases they cause, as well as prevention and treatment approaches.
This document provides information on the genus Yersinia including:
1) Yersinia pestis causes bubonic plague in humans and some animal species. Y. pseudotuberculosis and Y. enterocolitica can cause enteric diseases in humans and animals.
2) Yersinia species are facultative anaerobes that can grow at temperatures from 5-42°C. They are classified as Enterobacteriaceae.
3) Yersinia infections in animals include enteric disease in young ruminants and septicaemia in caged birds. Human infections include bubonic plague, as well as enteric diseases from Y. enterocolitica and Y. pseudotuberculosis
Glanders is an infectious disease that is caused by the bacterium Burkholderia mallei. While people can get the disease, glanders is primarily a disease affecting horses. It also affects donkeys and mules and can be naturally contracted by other mammals such as goats, dogs, and cats.
PPT on Direct Seeded Rice presented at the three-day 'Training and Validation Workshop on Modules of Climate Smart Agriculture (CSA) Technologies in South Asia' workshop on April 22, 2024.
When I was asked to give a companion lecture in support of ‘The Philosophy of Science’ (https://shorturl.at/4pUXz) I decided not to walk through the detail of the many methodologies in order of use. Instead, I chose to employ a long standing, and ongoing, scientific development as an exemplar. And so, I chose the ever evolving story of Thermodynamics as a scientific investigation at its best.
Conducted over a period of >200 years, Thermodynamics R&D, and application, benefitted from the highest levels of professionalism, collaboration, and technical thoroughness. New layers of application, methodology, and practice were made possible by the progressive advance of technology. In turn, this has seen measurement and modelling accuracy continually improved at a micro and macro level.
Perhaps most importantly, Thermodynamics rapidly became a primary tool in the advance of applied science/engineering/technology, spanning micro-tech, to aerospace and cosmology. I can think of no better a story to illustrate the breadth of scientific methodologies and applications at their best.
The debris of the ‘last major merger’ is dynamically youngSérgio Sacani
The Milky Way’s (MW) inner stellar halo contains an [Fe/H]-rich component with highly eccentric orbits, often referred to as the
‘last major merger.’ Hypotheses for the origin of this component include Gaia-Sausage/Enceladus (GSE), where the progenitor
collided with the MW proto-disc 8–11 Gyr ago, and the Virgo Radial Merger (VRM), where the progenitor collided with the
MW disc within the last 3 Gyr. These two scenarios make different predictions about observable structure in local phase space,
because the morphology of debris depends on how long it has had to phase mix. The recently identified phase-space folds in Gaia
DR3 have positive caustic velocities, making them fundamentally different than the phase-mixed chevrons found in simulations
at late times. Roughly 20 per cent of the stars in the prograde local stellar halo are associated with the observed caustics. Based
on a simple phase-mixing model, the observed number of caustics are consistent with a merger that occurred 1–2 Gyr ago.
We also compare the observed phase-space distribution to FIRE-2 Latte simulations of GSE-like mergers, using a quantitative
measurement of phase mixing (2D causticality). The observed local phase-space distribution best matches the simulated data
1–2 Gyr after collision, and certainly not later than 3 Gyr. This is further evidence that the progenitor of the ‘last major merger’
did not collide with the MW proto-disc at early times, as is thought for the GSE, but instead collided with the MW disc within
the last few Gyr, consistent with the body of work surrounding the VRM.
ESPP presentation to EU Waste Water Network, 4th June 2024 “EU policies driving nutrient removal and recycling
and the revised UWWTD (Urban Waste Water Treatment Directive)”
Immersive Learning That Works: Research Grounding and Paths ForwardLeonel Morgado
We will metaverse into the essence of immersive learning, into its three dimensions and conceptual models. This approach encompasses elements from teaching methodologies to social involvement, through organizational concerns and technologies. Challenging the perception of learning as knowledge transfer, we introduce a 'Uses, Practices & Strategies' model operationalized by the 'Immersive Learning Brain' and ‘Immersion Cube’ frameworks. This approach offers a comprehensive guide through the intricacies of immersive educational experiences and spotlighting research frontiers, along the immersion dimensions of system, narrative, and agency. Our discourse extends to stakeholders beyond the academic sphere, addressing the interests of technologists, instructional designers, and policymakers. We span various contexts, from formal education to organizational transformation to the new horizon of an AI-pervasive society. This keynote aims to unite the iLRN community in a collaborative journey towards a future where immersive learning research and practice coalesce, paving the way for innovative educational research and practice landscapes.
The cost of acquiring information by natural selectionCarl Bergstrom
This is a short talk that I gave at the Banff International Research Station workshop on Modeling and Theory in Population Biology. The idea is to try to understand how the burden of natural selection relates to the amount of information that selection puts into the genome.
It's based on the first part of this research paper:
The cost of information acquisition by natural selection
Ryan Seamus McGee, Olivia Kosterlitz, Artem Kaznatcheev, Benjamin Kerr, Carl T. Bergstrom
bioRxiv 2022.07.02.498577; doi: https://doi.org/10.1101/2022.07.02.498577
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
1. Francisella Tularensis
Samras. A
II B. Sc. Microbiology
PG & Research Department of Biotechnology and
Microbiology
National College [Autonomous]
Tiruchirappalli, Tamil Nadu- 620001, India
Francisella tularensis
2. History
1. This bacteria origin in tulare region in California .
2. It’s was first isolated by Geroge Walter McCoy (1876-1952) of US plague lab in San
Francisco in 1912 .
3. In 1922 Edward Francis (1872-1957) announced B. tulerinsis was the causative
agents of Tularensis .
4. But he couldn’t recognise the origin of the bacteria.
5. Hechiro Oharo discovered the origin of bacterial spread from rabbits in Fukushima
region of Japan.
3. MORPHOLOGY:
Capsulated
Gram Negative Bacilli
Non Motile
0.3 – 0.7 µm x 0.2 µm in size
Transparent colonies
Incubation for 3- 5 days
4. Mode of transmission :
Mostly rabbit and other rodents are spreaders
BIOTYPES :
Based on virulence and epidemilogocal behaviour, 2 types of biotypes were
recognized.
HIGHLY VIRULENCE STRAINS ARE FOUNDS ONLY IN NORTH AMERICA .
LOW VIRULENCE STRAINS ARE FOUND ONLY IN Europe and Asia
5. Lab Diagnosis:
Specimen:
• Scrapings from infected ulcers, lymph node biopsies,
and sputum, whole blood.
• To minimize the loss of viable organisms, samples
should be transported to the laboratory within 24
hours.
• If specimens are to be held longer than 24 hours,
specimens should be refrigerated in Amie’s transport
medium.
• F. tularensis should remain viable for up to 7 days
ambient temperature in Amie’s medium.
6. Direct Microscopy
• Gram negative coccobacilli are seen in Gram
staining procedure.
• A more sensitive and specific approach is direct
staining of the clinical specimen with fluorescein
labeled antibodies directed against the organism.
• Fluorescent antibody stains and immune-
histochemical stains are commercially available
for direct detection of the organism in lesion
smears and tissues and are typically available in
reference laboratories.
7. Francisella tularensis is a poorly staining, Gram-negative, non-motile,
coccobacillus bacterium, ranging from 0.2 by 0.2 to 0.7 µm in size
8. Culture:
The organism is strictly aerobic and is enhanced by enriched media
containing sulfhydryl compounds (cysteine, cystine, thiosulfate or
IsoVitaleX) for primary isolation.
Two commercial media for cultivation of the organism are
available: glucose cystine agar and cystine-heart agar, both require
the addition of 5% sheep or rabbit blood.
They are slow-growing organisms and require 2 to 4 days for
maximal colony formation.
They are weakly catalase positive and oxidase negative.
The identification is confirmed by demonstrating the reactivity of
the bacteria with specific antiserum (i.e., agglutination of the
organism with antibodies against Francisella).
10. Antibody detection :
Serum antibody detection is useful for all forms of
tularemia.
After the initial specimen, a convalescent sample
should be collected at 14 days and preferable up to
3 to 4 weeks after the appearance of symptoms.
Tularemia is diagnosed in most patients by
observing the increasing titer values of antibodies
during the illness or a single titer of 1:160 or
greater.
11. Molecular methods:
Conventional and real-time polymerase chain
reaction (PCR) assays have been developed to detect
F. tularensis directly in clinical specimens.
Of significance, several patients with clinically
suspected tularemia with negative serology and
culture had positive reaction in PCR.
12. Pathogenicity:
Francisella tularensis enters the respiratory tract and (2) the lamina propria of the respiratory bronchioles
via M cells; (3) Digested antigen is taken up by dendritic cells; the dendritic cells travel to regional lymph
nodes and present F. tularensis antigens to T-helper 1 cells; (4) T-helper 1 cells proliferate; they may return
to site of initial infection; (5) restimulation by local antigen presenting cells results in interferon-γ
production and macrophage activation; (6) Failure to clear the F. tularensis results in granuloma formation.
13. Clinical diagnosis:
F. tularensis subspecies exhibit a broad host ranges. Diseases caused
species is subdivided into several forms, based on clinical
presentation, namely:
typhoidal (systemic signs of sepsis)
pneumonic (pulmonary symptoms)
oculoglandular (eye involvement and swollen cervical lymph
nodes)
pharyngeal, ulceroglandular (cutaneous ulcer and swollen lymph
nodes),
glandular (primarily swollen lymph nodes with no other localized
symptoms)
14. Treatment of Francisella tularensis:
The organism is susceptible to aminoglycosides, and streptomycin is
the drug of choice.
Gentamicin is a possible alternative and now considered as drug of
choice.
Doxycycline and ciprofloxacin can be used to treat mild infections.
Doxycycline and chloramphenicol also have been used, although
these two agents have been associated with a higher rate of relapse
after treatment.
F. tularensis strains produce β-lactamase, which renders penicillins
cephalosporins ineffective.
Fluoroquinolones appear promising for treatment of severe
tularemia.
15. Prevention and control of Francisella tularensis:
Preventing bites from ticks, flies, as well as mosquitos.
Refrain from drinking untreated water.
Wearing protective clothing and using insect repellents reduce the
risk of exposure
If working with cultures of F. tularensis in the laboratory, wearing
a gown, impermeable gloves, mask, and eye protection is must.
Prompt removal of the tick can prevent infection.
Persons who have a high risk of exposure (e.g., exposure to an
infectious aerosol) should be treated with prophylactic antibiotics.