Electron spin resonance (ESR) spectroscopy is a technique used to study materials with unpaired electrons. It detects transitions between spin energy levels induced by a microwave source in the presence of a strong magnetic field. The three key points are:
1. ESR detects the absorption of microwaves by unpaired electrons in a material when it is exposed to a strong magnetic field, which splits the electronic energy levels.
2. The absorbed frequency is dependent on factors like the local electron environment and applied field strength, allowing structural information to be obtained.
3. Hyperfine interactions with neighboring atomic nuclei further split the energy levels and provide details like the number and identity of interacting nuclei.
NQR - DEFINITION - ELECTRIC FIELD GRADIENT - NUCLEAR QUADRUPOLE MOMENT - NUCLEAR QUADRUPOLE COUPLING CONSTANT - PRINCIPLE OF NQR - ENERGY OF INTERACTION - SELECTION RULE - FREQUENCY OF TRANSITION - APPLICATIONS
Electron Spin Resonance (ESR) SpectroscopyHaris Saleem
Electron Spin Resonance Spectroscopy
Also called EPR Spectroscopy
Electron Paramagnetic Resonance Spectroscopy
Non-destructive technique
Applications
Extensively used in transition metal complexes
Deviated geometries in crystals
NQR - DEFINITION - ELECTRIC FIELD GRADIENT - NUCLEAR QUADRUPOLE MOMENT - NUCLEAR QUADRUPOLE COUPLING CONSTANT - PRINCIPLE OF NQR - ENERGY OF INTERACTION - SELECTION RULE - FREQUENCY OF TRANSITION - APPLICATIONS
Electron Spin Resonance (ESR) SpectroscopyHaris Saleem
Electron Spin Resonance Spectroscopy
Also called EPR Spectroscopy
Electron Paramagnetic Resonance Spectroscopy
Non-destructive technique
Applications
Extensively used in transition metal complexes
Deviated geometries in crystals
For UG students of All Engineering Branches (Mechanical Engg., Chemical Engg., Instrumentation Engg., Food Technology) and PG students of Chemistry, Physics, Biochemistry, Pharmacy
The link of the video lecture at YouTube is
https://www.youtube.com/watch?v=t3QDG8ZIX-8
It contains the basic principle of Mossbauer Spectroscopy.
Recoil energy, Dopler shift.
The instrumentation of Mossbauer Spectroscopy.
Hyperfine interactions.
For UG students of All Engineering Branches (Mechanical Engg., Chemical Engg., Instrumentation Engg., Food Technology) and PG students of Chemistry, Physics, Biochemistry, Pharmacy
The link of the video lecture at YouTube is
https://www.youtube.com/watch?v=t3QDG8ZIX-8
It contains the basic principle of Mossbauer Spectroscopy.
Recoil energy, Dopler shift.
The instrumentation of Mossbauer Spectroscopy.
Hyperfine interactions.
Detects analytes without a UV chromophore, and gives a more accurate determination of sample mass balence than UV. LOD is 5ng on column depending on the analyte.
ESR is a branch of absorption spectroscopy .
It is absorbed microwave radiation by an unpaired electron when it is exposed to a strong magnetic field.
Species that contain unpaired electrons (transition metal complex, odd-electron molecules can therefore be detected by ESR.
ESR is also known as Electron Paramagnetic Resonance (EPR) or Electron Magnetic Resonance (EMR) .
Usually, analysis is not considered an easy subject and it can't be understood on its own if you don't have some proper notes and clear concepts so I am here to help you in analysis for clearing few concepts on UV-Visible spectrophotometer, soon will come up with a new set of notes on new topic depending upon the response.
Uv visible spectroscopy with InstrumentationSHIVANEE VYAS
It is the branch of science that deals with the study of the interaction of matter with light.
OR
It is the branch of science that deals with the study of the interaction of electromagnetic radiation with matter.
Electromagnetic radiation is energy that is propagated through free space or through a material medium in the form of electromagnetic waves, such as radio waves, visible light, and gamma rays, etc. Electromagnetic waves consist of discrete packages of energy which are called as photons.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
2. Electron e-
J.J. Thomson's Experiments leading to the "Discovery of the Electron" in 1897:
The mass of an electron is 9.10938 x 10-31 kg.
Each electron carries one unit of negative charge (1.602 x 1019 coulomb)
The electron is a subatomic particle e− or β− a negative elementary charge
3.
4. Spin
The electron spin is the electron’s electromagnetic field angular
momentum
spin is like a vector quantity
5. All Electron carry a charge. In some electron this charge spins on
the electron axis and this circulation of e charge generates a
magnetic dipole along the axies.
these particle also have the properties to spin on their
own axis and each of them possesses angular momentum1/2(h/2π)
in accordance with the quantum theory. The net resultant of the
angular momentum of all nuclear particles is called electron spin.
For a electron having a spin quantum number I, these are(2I +1)
spin states.
6. SPIN QUANTUM OF VARIOUS NUCLEI
Number of
protons
Number of
neutrons
Spin
quantum
number. I
Example
Even Even 0 12C, 16O, 32S
Odd/
Even
Even/
Odd 1/2,3/2,5/2
1H, 19F, 31P,
11B, 79Br &
13C, 127I,
odd odd 1 2H, 14N
6
17
35
Cl,
17
16O
7. ESR Spectroscopy
Electron Spin Resonance Spectroscopy
@lso called as
EPR Spectroscopy
Electron Paramagnetic Resonance Spectroscopy
8. PRINCIPLE
▪ ESR spectroscopy is based on the absorption of microwave radiation by an unpaired
electron when it is exposed to a strong magnetic field.
▪ The electronic energy levels of the atom or molecule will split into different levels.
▪ The magnitude of the splitting is dependent on the strength of the applied magnetic
field.
▪ The atom or molecule can be excited from one split level to another in the presence of
an external radiation of frequency corresponding to the frequency obtained from the
difference in energy between the split levels. Such an excitation is called a magnetic
resonance absorption.
▪ The magnetic resonance frequency will hence be influenced by the local environment
of the atom or molecule.
9.
10.
11.
12. • Klystron tube acts as the source of radiation.
• The frequency of the monochromatic
radiation is determined by the voltage
applied to klystron.
• It is kept a fixed frequency by an
automatic control circuit and provides
a power output of about 300 milli watts.
13. The wave meter is put in between the oscillator
and attenuator to know the frequency of
microwaves produced by klystron oscillator.
The wave meter is usually calibrated in
frequency unit (megahertz) instead of
wavelength. Wave guide is a hollow,
rectangular brass tube. It is used to convey the
wave radiation to the sample and crystal.
14.
15. The power propagated down the wave
guide may be continuously decreased by
inserting a piece of resistive material into
the wave guide.
The piece is called variable attenuator and
used in varying the power of the sample
from the full power of klystron to one
attenuated by a force 100 or more.
16.
17. It is a non-reciprocal device which minimizes vibrations in
the frequency of microwaves produced by klystron
oscillator.
Isolators are used to prevent the reflection of microwave
power back into the radiation source.
It is a strip of ferrite material which allows micro waves
in one direction only.
It also is being stabilizing the frequency of the klystron.
18.
19. The heart of the ESR spectrometer is the resonant sample cavity.
In most of the ESR spectrometers, dual sample cavities are generally
used.
This is done for simultaneous observation of a sample and a
reference material.
Since magnetic field interacts with the sample to cause spin
resonance the sample is placed where the intensity of magnetic
field is greatest.
A measure of quality of the cavity is ‘Q factor’ which is defined as The
sensitivity of the spectrometer is directly proportional to this value of
Q.
20.
21. The various components of the micro wave
assembly to be coupled together by making use of
irises or slots of various sizes.
22. A Silicon crystal detectors, which converts
the radiation in D.C., has widely been used as
a detector of microwave radiation.
Microwave Bridge such as magic T and hybrid
ring variety are most common.
23.
24. The resonant cavity is placed between the poles pieces of
an electromagnet.
An electro magnet capable of producing magnetic field of
at least 5000 gauss is required for ESR.
The field should be stable and uniform over the sample
volume.
The stability of field is achieved by energizing the magnet
with a highly regulated power supply.
25. The ESR spectrum is recorded by slowly varying the
magnetic field through the resonance condense by
sweeping the current supplied to the magnet by the
power supply.
This sweep is usually accomplished by with a
variable speed motor drive.
Both the magnet as well as the power supply may
require water cooling.
26. The modulation of the signal at a frequency
consistent with good signal noise ratio in the crystal
detector is accomplished by a small alternating
variation of the magnetic field.
The variation is produced by supplying an A.C.
signal to modulation coil oriented with respect the
sample in the same direction as the magnetic field.
27. If the modulation is of low frequency (400
cycles/sec or less), the coils can be mounted
outside the cavity and even on the magnet pole
pieces.
For higher modulation frequencies, modulation
coils must be mounted inside the resonant cavity
or cavities constructed of a non-metallic
material
e.g., Quartz with a tin silvered plating, because
metallic penetration is not very effective in case
of higher modulation frequencies.
28.
29. In order to adjust the spectrometer and to observe
the signal, a cathode ray oscilloscope has been
employed. A strip chart or X-Y recorder is used for
recording the signal.
EPR spectra are usually displayed in derivative
form to improve the signal-to-noise ratio.
32. ▪ The sample is placed in a resonant cavity which admits microwaves
through an iris.
▪ The cavity is located in the middle of an electromagnet and helps to
amplify the weak signals from the sample.
▪ Numerous types of solid-state diodes are sensitive to microwave energy
▪ Absorption lines are detected when the separation of the energy levels
is equal to the energy of the incident microwave.
33. What causes the energy levels?
Resulting energy levels of an electron in a magnetic field
34. Describing the energy levels
▪ Based upon the spin of an electron and its associated magnetic moment
▪ For a molecule with one unpaired electron
– In the presence of a magnetic field, the two electron spin energy levels are
E = gmBB0MS
g = proportionality factor mB = Bohr magneton
MS = electron spin B0 = Magnetic field
quantum number
(+½ or -½)
35. Hyperfine Interactions
▪ EPR signal is ‘split’ by neighboring nuclei
– Called hyperfine interactions
▪ Can be used to provide information
– Number and identity of nuclei
– Distance from unpaired electron
▪ Interactions with neighboring nuclei
E = gmBB0MS + aMsmI
a = hyperfine coupling constant
mI = nuclear spin quantum number
37. Hyperfine Interactions
▪ Coupling patterns same as in NMR
▪ More common to see coupling to nuclei with spins greater than ½
▪ The number of lines:
2NI + 1
N = number of equivalent nuclei
I = spin
▪ Only determines the number of lines--not the intensities
38. Hyperfine Interactions
▪ Relative intensities determined by the number of interacting
nuclei
▪ If only one nucleus interacting
– All lines have equal intensity
▪ If multiple nuclei interacting
– Distributions derived based upon spin
– For spin ½ (most common), intensities follow binomial distribution
39. Hyperfine Interactions
▪ Example:
– VO(acac)2
– Interaction with vanadium nucleus
– For vanadium, I = 7/2
– So,
2NI + 1 = 2(1)(7/2) + 1 = 8
– You would expect to see 8 lines of equal intensity
vanadyl acetylacetonate
41. Hyperfine Interactions
Pyrazine anion Electron delocalized over ring
Exhibits coupling to two equivalent N (I = 1)
2NI + 1 = 2(2)(1) + 1 = 5
Then couples to four equivalent
H (I = ½)
2NI + 1 = 2(4)(1/2) + 1 = 5
So spectrum should be a quintet with intensities 1:2:3:2:1
and each of those lines should be split into quintets with
intensities 1:4:6:4:1
45. • Electron Spin Resonance is a powerful
non-destructive & non-intrusive analytical method.
• ESR yields meaningful structural information even
from ongoing chemical or physical processes,
without influencing the process itself.
• It is the ideal technique to complement other
analytical methods in a wide range of application
areas.
46. Free Radicals
Odd-electron Molecules
Transition Metal Complexes
Molecular Motion
Rare Earth Ions
Crystal / Ligand Fields
Electron Transport
Reaction Kinetics
etc.. Can be detected by ESR.
47.
48. 1. Clearly mention state the model of ESR Spectormeter for your sample analysis.
2. Analysis charges would vary depending on model selection. Relevent charges are
given under each model
3. Clearly state the type of analysis required. Powder/Solution and also RT/77K For
solution sample suggest name of solvent.
4. Experiments can be carried out at ambient temperature, liquid nitrogen
temperature and most of the temperatures between liquid nitrogen temperature and 200o
C.
5. Experiments can be carried out with samples in liquid, solid or gaseous form, which
includes single crystals, metal alloys, liquid crystals, organic radicals, polymers, glasses,
powders, triplets, polyradicals, conduction electrons, drugs, rare-earths, enzymes,
proteins and gases.
6. Provide minimum 25-50 mg of solid sample in powder form.