A bacterial plasmid is a short, usually circular, and double-stranded segment of DNA that is found in the cytoplasm separate from the main bacterial chromosome. This presentation contains plasmid features, replication, classification and its uses.
Autonomously replicating circular fragment present in DNA is called plasmids.
The term plasmid was first introduced by American molecular biologist Joshua Lederberg in1952.
An episome is a plasmid capable of inserting DNA into the host chromosome.
Because of their ability to transfer DNA from one bacterium to another, plasmids are extensively used in recombinant DNA technology or genetic engineering.
This document provides an overview of plasmids. It defines plasmids as small, circular, extrachromosomal DNA molecules that can replicate independently in bacteria. Plasmids contain genes that provide benefits to bacteria like antibiotic resistance. They are transferred between bacteria through processes like transformation, transduction, and conjugation. Plasmids are classified based on their functions and are important tools in biotechnology as they allow cloning, protein production, and other applications.
Plasmids are small, circular DNA molecules that are separate from the bacterial chromosome and can replicate independently. They were first described by American molecular biologist Joshua Lederberg in 1952. Plasmids often contain genes that provide bacteria with functions not necessary for survival, such as antibiotic resistance or virulence factors. They are commonly used as cloning vectors in genetic engineering to generate copies of genes of interest in bacteria. Plasmids have an origin of replication, selectable marker gene, and cloning site that allow them to be used to replicate, select for, and clone DNA fragments in bacteria.
Plasmids are extra-chromosomal DNA molecules found in bacteria that can replicate independently of chromosomal DNA. They vary in size but are usually between 1,000 to 25,000 base pairs. Plasmids are not essential for bacterial survival but can contain genes that allow bacteria to survive better in adverse environments or compete with other microbes. There are several classes of plasmids including F-plasmids for conjugation, R-plasmids for antibiotic resistance, Col-plasmids for bacteriocin production, and virulence plasmids that make bacteria pathogenic. Bacteria can exchange plasmids through conjugation, transformation, or transduction. Plasmids are useful tools in molecular biology and
• Plasmids are extra-chromosomal genetic elements that replicate independently of the host chromosome.
• They are small, circular (some are linear), double-stranded DNA molecules that exist in bacterial cells and in some eukaryotes.
This document provides an overview of gene transfer in bacteria through three main methods: conjugation, transformation, and transduction. Conjugation involves the transfer of genetic material between bacteria via cell-to-cell contact through sex pili. Transformation refers to the uptake of naked DNA by competent bacterial cells. Transduction is the transfer of DNA from one bacterium to another via bacteriophage. Each method is described in 1-2 paragraphs detailing its history of discovery and basic mechanisms.
This document discusses transposons, which are DNA segments that can move within a genome. Transposons carry genes and can generate DNA rearrangements that impact cell survival and evolution. They encode transposase proteins that catalyze the transposition process. There are different types of transposons based on their mechanism of movement, including cut-and-paste transposons, replicative transposons, and retrotransposons. Examples like Tn3 and bacteriophage Mu are provided. Transposons can cause mutations and have played a significant role in genome alteration and evolution over time.
Autonomously replicating circular fragment present in DNA is called plasmids.
The term plasmid was first introduced by American molecular biologist Joshua Lederberg in1952.
An episome is a plasmid capable of inserting DNA into the host chromosome.
Because of their ability to transfer DNA from one bacterium to another, plasmids are extensively used in recombinant DNA technology or genetic engineering.
This document provides an overview of plasmids. It defines plasmids as small, circular, extrachromosomal DNA molecules that can replicate independently in bacteria. Plasmids contain genes that provide benefits to bacteria like antibiotic resistance. They are transferred between bacteria through processes like transformation, transduction, and conjugation. Plasmids are classified based on their functions and are important tools in biotechnology as they allow cloning, protein production, and other applications.
Plasmids are small, circular DNA molecules that are separate from the bacterial chromosome and can replicate independently. They were first described by American molecular biologist Joshua Lederberg in 1952. Plasmids often contain genes that provide bacteria with functions not necessary for survival, such as antibiotic resistance or virulence factors. They are commonly used as cloning vectors in genetic engineering to generate copies of genes of interest in bacteria. Plasmids have an origin of replication, selectable marker gene, and cloning site that allow them to be used to replicate, select for, and clone DNA fragments in bacteria.
Plasmids are extra-chromosomal DNA molecules found in bacteria that can replicate independently of chromosomal DNA. They vary in size but are usually between 1,000 to 25,000 base pairs. Plasmids are not essential for bacterial survival but can contain genes that allow bacteria to survive better in adverse environments or compete with other microbes. There are several classes of plasmids including F-plasmids for conjugation, R-plasmids for antibiotic resistance, Col-plasmids for bacteriocin production, and virulence plasmids that make bacteria pathogenic. Bacteria can exchange plasmids through conjugation, transformation, or transduction. Plasmids are useful tools in molecular biology and
• Plasmids are extra-chromosomal genetic elements that replicate independently of the host chromosome.
• They are small, circular (some are linear), double-stranded DNA molecules that exist in bacterial cells and in some eukaryotes.
This document provides an overview of gene transfer in bacteria through three main methods: conjugation, transformation, and transduction. Conjugation involves the transfer of genetic material between bacteria via cell-to-cell contact through sex pili. Transformation refers to the uptake of naked DNA by competent bacterial cells. Transduction is the transfer of DNA from one bacterium to another via bacteriophage. Each method is described in 1-2 paragraphs detailing its history of discovery and basic mechanisms.
This document discusses transposons, which are DNA segments that can move within a genome. Transposons carry genes and can generate DNA rearrangements that impact cell survival and evolution. They encode transposase proteins that catalyze the transposition process. There are different types of transposons based on their mechanism of movement, including cut-and-paste transposons, replicative transposons, and retrotransposons. Examples like Tn3 and bacteriophage Mu are provided. Transposons can cause mutations and have played a significant role in genome alteration and evolution over time.
The trp operon contains a cluster of genes involved in tryptophan biosynthesis that are under the control of a single promoter. It was the first repressible operon discovered in E. coli in 1953. The trp operon contains structural genes that encode enzymes for tryptophan synthesis, as well as a promoter, operator, and regulatory genes. Tryptophan acts as an effector molecule that binds to the repressor protein, increasing its affinity for the operator sequence and repressing transcription when tryptophan is present. The trp operon is also regulated by transcriptional attenuation, where tryptophan levels affect the formation of termination or anti-termination hairpin loops in the mRNA.
Cosmids are hybrid cloning vectors that combine features of plasmids and bacteriophages. They contain approximately 200 base pairs of DNA from the lambda phage, including the cos site sequence, which allows the vector to be packaged into phage particles and transduced into bacteria like a phage. Cosmids can accommodate large foreign DNA inserts of 35-45 kilobase pairs and are commonly used to construct genomic libraries.
Bacteriophage vectors
Bacteriophage
WHY BACTERIOPHAGE AS A VECTOR?
M13 phage
Genome of m13 phage
Life cycle and dna replication of m13
CONSTRUCTION M13 AS PHAGE VECTOR
M13 MP 2 vector
M13MP7 VECTOR
Selection of recombinants
Lambda replacement vectors
LAMBDA EMBL 4 VECTOR
P1 PHAGE
GENOME OF P1 PHAGE
P1 PHAGE AS VECTOR
P1 phage vector system
Ti plasmids are found in Agrobacterium tumefaciens bacteria and contain genes that allow the bacteria to transform plant cells and cause crown gall tumors. The plasmid contains virulence genes that are activated by plant signals and mediate transfer of T-DNA into the plant genome. T-DNA integration results in tumor formation and production of opines that the bacteria can utilize. Ti plasmids have been engineered as vectors for plant transformation by removing oncogenes and adding gene of interest between the border sequences, allowing transformation via Agrobacterium infection of wounded plant tissues.
Lectut btn-202-ppt-l4. bacteriophage lambda and m13 vectors (1)Rishabh Jain
This document describes the bacteriophages λ and M13, which are commonly used as cloning vectors. λ phage is a temperate phage that infects E. coli and has a double-stranded linear DNA genome. Its genome is organized into regions that encode proteins for the phage head, tail, and lysogeny/lysis functions. M13 is a filamentous phage with a single-stranded circular genome. Both phages can be modified and used to insert and replicate foreign DNA fragments in E. coli for cloning purposes.
F plasmid is a conjugative plasmid found in Escherichia coli that was the first plasmid discovered. It plays an important role in bacterial reproduction by containing genes that code for the production of sex pili and enzymes required for conjugation. The F plasmid replicates through a rolling circle mechanism and transfers between bacteria via conjugation using an F pilus. During conjugation, the F plasmid unwinds and one strand is transferred to the recipient cell where it is replicated to form a double-stranded circular plasmid, converting the recipient into an F+ cell capable of plasmid transfer.
description of plasmids and types and importance of plasmids and artificial plasmids(PBR322,cosmids,phagemids) and selection of the recombinants and uses and advantages and disadvantages of the plasmids
The document discusses various types of bacteriophage vectors that can be used for cloning genomic DNA, including their structure and applications. Phage derivatives like lambda phages and M13 phages have been developed as cloning vectors since they allow large DNA fragments to be cloned and can package millions of recombinant phage particles. The document describes different types of phage vectors like insertion vectors containing a single cloning site, replacement vectors where the insert substitutes phage DNA sequences, and hybrid plasmid-phage vectors. It provides details about various vector systems including cosmids, which combine phage and plasmid properties to clone large DNA fragments.
Transportable elements are DNA Sequences that move from one location in a chromosome to another within the same chromosome or into another chromosome.
These are DNA Sequences that move from one location in a chromosome to another within the same chromosome or into another chromosome.
These are DNA Sequences that move from one location in a chromosome to another within the same chromosome or into another chromosome.
These are also known as “Jumping genes”.
It is defined simply as a technique to efficiently and stably introduce foreign genes into the genome of target cells.
The insertion of unrelated, therapeutic genetic information in the form of DNA into target cells
Cosmid Vectors, YAC and BAC Expression VectorsCharthaGaglani
1. Cosmid vectors are hybrid vectors derived from plasmids that contain the cos site from bacteriophage lambda, allowing them to clone DNA fragments up to 40 kb in size.
2. Yeast artificial chromosomes (YACs) are engineered yeast chromosomes that can clone very large DNA fragments, averaging 200-500 kb but up to 1 MB, taking advantage of yeast cell machinery.
3. Bacterial artificial chromosomes (BACs) are DNA constructs based on fertility plasmids that can clone up to 300 kb fragments and address issues with YAC stability and recombination.
The document provides information about bacterial transformation. It describes that transformation is the process by which bacteria take up extracellular DNA from their environment. Frederick Griffith first discovered transformation in 1928 while working with pneumococcus bacteria. His experiments showed that a non-virulent rough form could be transformed into a virulent smooth form by DNA from a heat-killed smooth strain. Later experiments by Avery, Macleod and McCarty demonstrated that DNA is the transforming principle and genetic material of bacteria. The document then discusses various methods of bacterial transformation including chemical and physical methods like electroporation and use of calcium chloride. It also explains the molecular mechanism of transformation involving DNA binding, penetration, synapsis formation and integration into the bacterial chromosome.
1. Yeast plasmids like the 2 micron circle have been extensively studied and developed into yeast cloning vectors.
2. Shuttle vectors like YEp vectors contain selectable marker genes like LEU2 and bacterial plasmid origins of replication like pBR322, allowing them to replicate in both E. coli and yeast.
3. The 2 micron circle is a 6kb endogenous yeast plasmid that replicates autonomously through an ARS sequence and is maintained at 50-100 copies per cell.
The document discusses various methods for screening and selecting recombinant cells. Direct selection methods include antibiotic resistance screening and blue-white color screening. Indirect selection methods include screening by nucleic acid hybridization, colony hybridization, immunological assays, and detecting protein/enzyme activity. These screening methods allow identification of recombinant cells that contain the gene of interest from a mixture of transformed cells.
transduction is a process which that bacteriophage is transfer the genetic material to one to another bacterial cell .the transduction is have a two types that is generalized and specialized transduction .the two types of phage will be involve in the transduction process that is virulant and temptate pahge
1. There are four main models of DNA replication: rolling circle replication, theta replication, bidirectional replication of linear DNA, and telomere replication.
2. Rolling circle replication involves nicking circular DNA and using one strand as a template to produce multiple copies of the original circular DNA.
3. Theta replication occurs in prokaryotes and involves unwinding circular DNA at an origin of replication and replicating bi-directionally to form a theta-shaped structure.
4. Bidirectional replication of linear DNA involves unwinding DNA at origins of replication and using leading and lagging strand synthesis to replicate in both directions until the ends of the linear genome are reached.
Selection and screening of recombinant clones neeru02
This document discusses several methods for selecting recombinant clones after introducing recombinant DNA into host cells:
- Direct selection involves using a gene from the inserted DNA that confers antibiotic resistance to select clones that grow on media containing that antibiotic.
- Insertional inactivation selection works by inactivating a host gene when foreign DNA inserts into it, allowing selection of recombinants.
- Blue-white screening uses a vector with a disrupted lacZ gene; foreign DNA insertion repairs the gene, allowing recombinants to be identified by colony color.
- Colony hybridization detects recombinants by transferring colonies to a membrane and probing for the inserted DNA sequence.
- Immunological tests identify clones expressing antigens encoded by the
This document discusses mutagens and types of mutations. It defines mutagens as physical, chemical, or biological agents that cause mutations by altering genes or gene expression. It describes several types of mutagens including radiation, chemicals, viruses and bacteria. It also categorizes different types of mutations including point mutations, frameshift mutations, transitions, transversions, missense mutations and more. Several examples of diseases caused by specific mutations are provided such as sickle cell anemia, cystic fibrosis, and others.
Plasmids are circular pieces of DNA that can replicate independently of the bacterial chromosome. They are commonly found in bacteria and can be used to transfer genes between cells in recombinant DNA research. Plasmids can contain genes for fertility, antibiotic resistance, killing other bacteria, digesting unusual substances, and turning bacteria into pathogens.
1. Bacterial genetics follows the same principles as other organisms, with bacteria reproducing asexually and passing genetic traits from parents to offspring.
2. DNA was discovered to be the genetic material through experiments like Griffith's, which showed that killed pneumococci could transfer genetic material to live pneumococci.
3. Bacteria have mechanisms for horizontal gene transfer including transformation, transduction, and conjugation. Conjugation involves direct contact between bacteria and transfer of plasmids which can carry antibiotic resistance or other genes.
The trp operon contains a cluster of genes involved in tryptophan biosynthesis that are under the control of a single promoter. It was the first repressible operon discovered in E. coli in 1953. The trp operon contains structural genes that encode enzymes for tryptophan synthesis, as well as a promoter, operator, and regulatory genes. Tryptophan acts as an effector molecule that binds to the repressor protein, increasing its affinity for the operator sequence and repressing transcription when tryptophan is present. The trp operon is also regulated by transcriptional attenuation, where tryptophan levels affect the formation of termination or anti-termination hairpin loops in the mRNA.
Cosmids are hybrid cloning vectors that combine features of plasmids and bacteriophages. They contain approximately 200 base pairs of DNA from the lambda phage, including the cos site sequence, which allows the vector to be packaged into phage particles and transduced into bacteria like a phage. Cosmids can accommodate large foreign DNA inserts of 35-45 kilobase pairs and are commonly used to construct genomic libraries.
Bacteriophage vectors
Bacteriophage
WHY BACTERIOPHAGE AS A VECTOR?
M13 phage
Genome of m13 phage
Life cycle and dna replication of m13
CONSTRUCTION M13 AS PHAGE VECTOR
M13 MP 2 vector
M13MP7 VECTOR
Selection of recombinants
Lambda replacement vectors
LAMBDA EMBL 4 VECTOR
P1 PHAGE
GENOME OF P1 PHAGE
P1 PHAGE AS VECTOR
P1 phage vector system
Ti plasmids are found in Agrobacterium tumefaciens bacteria and contain genes that allow the bacteria to transform plant cells and cause crown gall tumors. The plasmid contains virulence genes that are activated by plant signals and mediate transfer of T-DNA into the plant genome. T-DNA integration results in tumor formation and production of opines that the bacteria can utilize. Ti plasmids have been engineered as vectors for plant transformation by removing oncogenes and adding gene of interest between the border sequences, allowing transformation via Agrobacterium infection of wounded plant tissues.
Lectut btn-202-ppt-l4. bacteriophage lambda and m13 vectors (1)Rishabh Jain
This document describes the bacteriophages λ and M13, which are commonly used as cloning vectors. λ phage is a temperate phage that infects E. coli and has a double-stranded linear DNA genome. Its genome is organized into regions that encode proteins for the phage head, tail, and lysogeny/lysis functions. M13 is a filamentous phage with a single-stranded circular genome. Both phages can be modified and used to insert and replicate foreign DNA fragments in E. coli for cloning purposes.
F plasmid is a conjugative plasmid found in Escherichia coli that was the first plasmid discovered. It plays an important role in bacterial reproduction by containing genes that code for the production of sex pili and enzymes required for conjugation. The F plasmid replicates through a rolling circle mechanism and transfers between bacteria via conjugation using an F pilus. During conjugation, the F plasmid unwinds and one strand is transferred to the recipient cell where it is replicated to form a double-stranded circular plasmid, converting the recipient into an F+ cell capable of plasmid transfer.
description of plasmids and types and importance of plasmids and artificial plasmids(PBR322,cosmids,phagemids) and selection of the recombinants and uses and advantages and disadvantages of the plasmids
The document discusses various types of bacteriophage vectors that can be used for cloning genomic DNA, including their structure and applications. Phage derivatives like lambda phages and M13 phages have been developed as cloning vectors since they allow large DNA fragments to be cloned and can package millions of recombinant phage particles. The document describes different types of phage vectors like insertion vectors containing a single cloning site, replacement vectors where the insert substitutes phage DNA sequences, and hybrid plasmid-phage vectors. It provides details about various vector systems including cosmids, which combine phage and plasmid properties to clone large DNA fragments.
Transportable elements are DNA Sequences that move from one location in a chromosome to another within the same chromosome or into another chromosome.
These are DNA Sequences that move from one location in a chromosome to another within the same chromosome or into another chromosome.
These are DNA Sequences that move from one location in a chromosome to another within the same chromosome or into another chromosome.
These are also known as “Jumping genes”.
It is defined simply as a technique to efficiently and stably introduce foreign genes into the genome of target cells.
The insertion of unrelated, therapeutic genetic information in the form of DNA into target cells
Cosmid Vectors, YAC and BAC Expression VectorsCharthaGaglani
1. Cosmid vectors are hybrid vectors derived from plasmids that contain the cos site from bacteriophage lambda, allowing them to clone DNA fragments up to 40 kb in size.
2. Yeast artificial chromosomes (YACs) are engineered yeast chromosomes that can clone very large DNA fragments, averaging 200-500 kb but up to 1 MB, taking advantage of yeast cell machinery.
3. Bacterial artificial chromosomes (BACs) are DNA constructs based on fertility plasmids that can clone up to 300 kb fragments and address issues with YAC stability and recombination.
The document provides information about bacterial transformation. It describes that transformation is the process by which bacteria take up extracellular DNA from their environment. Frederick Griffith first discovered transformation in 1928 while working with pneumococcus bacteria. His experiments showed that a non-virulent rough form could be transformed into a virulent smooth form by DNA from a heat-killed smooth strain. Later experiments by Avery, Macleod and McCarty demonstrated that DNA is the transforming principle and genetic material of bacteria. The document then discusses various methods of bacterial transformation including chemical and physical methods like electroporation and use of calcium chloride. It also explains the molecular mechanism of transformation involving DNA binding, penetration, synapsis formation and integration into the bacterial chromosome.
1. Yeast plasmids like the 2 micron circle have been extensively studied and developed into yeast cloning vectors.
2. Shuttle vectors like YEp vectors contain selectable marker genes like LEU2 and bacterial plasmid origins of replication like pBR322, allowing them to replicate in both E. coli and yeast.
3. The 2 micron circle is a 6kb endogenous yeast plasmid that replicates autonomously through an ARS sequence and is maintained at 50-100 copies per cell.
The document discusses various methods for screening and selecting recombinant cells. Direct selection methods include antibiotic resistance screening and blue-white color screening. Indirect selection methods include screening by nucleic acid hybridization, colony hybridization, immunological assays, and detecting protein/enzyme activity. These screening methods allow identification of recombinant cells that contain the gene of interest from a mixture of transformed cells.
transduction is a process which that bacteriophage is transfer the genetic material to one to another bacterial cell .the transduction is have a two types that is generalized and specialized transduction .the two types of phage will be involve in the transduction process that is virulant and temptate pahge
1. There are four main models of DNA replication: rolling circle replication, theta replication, bidirectional replication of linear DNA, and telomere replication.
2. Rolling circle replication involves nicking circular DNA and using one strand as a template to produce multiple copies of the original circular DNA.
3. Theta replication occurs in prokaryotes and involves unwinding circular DNA at an origin of replication and replicating bi-directionally to form a theta-shaped structure.
4. Bidirectional replication of linear DNA involves unwinding DNA at origins of replication and using leading and lagging strand synthesis to replicate in both directions until the ends of the linear genome are reached.
Selection and screening of recombinant clones neeru02
This document discusses several methods for selecting recombinant clones after introducing recombinant DNA into host cells:
- Direct selection involves using a gene from the inserted DNA that confers antibiotic resistance to select clones that grow on media containing that antibiotic.
- Insertional inactivation selection works by inactivating a host gene when foreign DNA inserts into it, allowing selection of recombinants.
- Blue-white screening uses a vector with a disrupted lacZ gene; foreign DNA insertion repairs the gene, allowing recombinants to be identified by colony color.
- Colony hybridization detects recombinants by transferring colonies to a membrane and probing for the inserted DNA sequence.
- Immunological tests identify clones expressing antigens encoded by the
This document discusses mutagens and types of mutations. It defines mutagens as physical, chemical, or biological agents that cause mutations by altering genes or gene expression. It describes several types of mutagens including radiation, chemicals, viruses and bacteria. It also categorizes different types of mutations including point mutations, frameshift mutations, transitions, transversions, missense mutations and more. Several examples of diseases caused by specific mutations are provided such as sickle cell anemia, cystic fibrosis, and others.
Plasmids are circular pieces of DNA that can replicate independently of the bacterial chromosome. They are commonly found in bacteria and can be used to transfer genes between cells in recombinant DNA research. Plasmids can contain genes for fertility, antibiotic resistance, killing other bacteria, digesting unusual substances, and turning bacteria into pathogens.
1. Bacterial genetics follows the same principles as other organisms, with bacteria reproducing asexually and passing genetic traits from parents to offspring.
2. DNA was discovered to be the genetic material through experiments like Griffith's, which showed that killed pneumococci could transfer genetic material to live pneumococci.
3. Bacteria have mechanisms for horizontal gene transfer including transformation, transduction, and conjugation. Conjugation involves direct contact between bacteria and transfer of plasmids which can carry antibiotic resistance or other genes.
Genetically modified organisms and limitationsZahra Naz
Genetically modified organisms (GMOs) are organisms whose genetic material has been altered using genetic engineering techniques. The production of GMOs involves identifying a gene of interest, amplifying it, and inserting it into an organism's genome. Common examples of GMOs include plants engineered for herbicide and pest resistance, golden rice with increased vitamin A, and bacteria used to produce insulin and vaccines. While GMOs may increase yields and benefit farmers, there are also concerns about their impacts on health and the environment as well as ethical issues.
BIO 106
Lecture 13: Genetic Engineering and Biotechnology
A. Recombinant DNA/ Genetic Engineering
B. Applications of Genetic Engineering
1. Researches on Human Genes
2. Researches on Animal Genes
3. Researches on Plant Genes
4. Researches on Microbial Genes
C. The Release of Genetically Engineered Organisms
1. Biosafety and Ecological Implications
1.1 Potential Ecological Concerns
1.2 Regulatory Policies
Bioindicators are organisms that can be used to monitor environmental health. Different types of bioindicators like plants, animals, and microbes indicate different types of pollution or environmental changes. Scientists observe changes in bioindicator populations to assess environmental conditions. This document provides examples of various bioindicator species and how they are used, including lichens for air quality, earthworms for soil toxicity, and diatoms for water acidity. It also outlines classifications of bioindicators and criteria for selecting effective bioindicator species.
Vectors can perform their functions in two main ways: transcription and expression. There are several types of vectors, including plasmids, which are small, self-replicating DNA molecules commonly used in molecular cloning. Plasmids are important tools in genetic engineering as they can be easily manipulated and transformed into bacteria to generate multiple copies of recombinant DNA. Common plasmid vectors include transcription vectors, which amplify DNA sequences without expressing proteins, and expression vectors, which are used to express foreign genes in cells.
A gene is the fundamental physical and functional unit of heredity that is responsible for an organism's physical and inheritable characteristics. Genetic engineering involves manipulating or altering the structure of genes to create desired traits in an organism. If genetic material from another species is added, the resulting organism is called transgenic. Genetic engineering can also remove genetic material, creating a knock out organism.
This document discusses genetically modified organisms (GMOs). It defines GMOs as organisms whose genetic material has been altered through genetic engineering techniques. The document then describes how GMOs are produced through inserting or deleting genes from different species. It provides examples of genetically modified plants, microbes, mammals, and fish that have been created for various purposes like producing useful goods, scientific research, and improved crops. The document also discusses the principles of genetic engineering compared to traditional breeding and lists some pros and cons of genetic modification.
Plasmids are extrachromosomal DNA molecules found in bacterial cells that can replicate independently of the bacterial chromosome. They vary in size and may contain genes that provide useful traits to the bacteria like antibiotic resistance. Plasmids can exist in multiple copies within a cell and may be classified based on their ability to transfer between bacteria, function, copy number, or compatibility with other plasmids. Common plasmids include ColE1, SV40, and pMB9 which are used extensively in research and biotechnology.
This document discusses microbial genetics and plasmids. Some key points:
- Plasmids are small DNA molecules that can replicate independently of the bacterial chromosome and are sometimes necessary for bacteria to survive. They often contain genes for antibiotic resistance or other useful functions.
- Plasmids can be circular or linear. Circular plasmids are more common but linear plasmids have been found in some bacteria.
- Plasmid size varies greatly from 1kb to over 250kb. Larger plasmids are less common.
- Plasmids are maintained at a certain copy number per cell, ranging from 1 copy to over 50 copies. Higher copy plasmids are more stably inherited during cell
Viruses are sub-microscopic parasites that can only replicate inside host cells. They contain either DNA or RNA genomes but not both. Viruses enter host cells and use the host's cellular machinery to replicate their genomes and produce new virus particles. Bacteriophages are viruses that infect bacteria. They can be either virulent, killing the host cell, or temperate, integrating their genome into the host's chromosome. Plasmids are small extrachromosomal DNA molecules that are replicated independently of the host genome and can be stably inherited. Plasmids often encode traits like antibiotic resistance but are not required for host cell survival. Both plasmids and bacteriophages can transfer genetic material between bacteria.
Plasmids are extrachromosomal DNA elements found in bacteria that can replicate independently of the bacterial chromosome. They play an important role in horizontal gene transfer between bacteria by allowing bacterial populations to acquire beneficial traits. Plasmids are also useful genetic engineering tools as they can be used to clone DNA fragments and produce recombinant proteins. Plasmid DNA vaccines utilize purified plasmid vectors encoding antigen genes to induce immune responses against the encoded antigen.
Viruses can only replicate inside host cells and rely on the host for transcription and translation. Virus genomes consist of either DNA or RNA but not both, and can be single or double stranded. Bacteriophages infect bacteria and can either lyse the host cell or integrate into the bacterial chromosome and remain dormant. Plasmids are small extrachromosomal DNA molecules that can be stably inherited and confer additional functions like antibiotic resistance on bacteria. Bacteria can exchange genetic material through transformation, conjugation, and transduction, allowing for recombination of traits.
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Joshua Lederberg was an American molecular biologist who first introduced the term "plasmid" in 1952 and won the 1958 Nobel Prize in Physiology at age 33 for his work in genetics. Plasmids are small, circular DNA molecules that naturally exist in bacterial cells and some eukaryotes. They often carry genes that provide advantages to bacteria like antibiotic resistance. Plasmids are useful in research because they are easy to isolate, manipulate, and replicate in bacteria. The nucleoid refers to the region in a prokaryotic cell that contains its chromosomal DNA and is more compact than the nucleus in eukaryotic cells.
Plasmids are small, circular DNA molecules that can replicate independently of the chromosomal DNA. They are found in bacteria, archaea, and some eukaryotes. Plasmids contain genes that allow for replication, antibiotic resistance, degradation of environmental toxins, and bacterial conjugation. Different types of plasmids serve different functions, such as resistance plasmids carrying antibiotic resistance genes or fertility plasmids containing genes for bacterial mating. Plasmids can transfer genes horizontally between bacteria through conjugation.
Plasmids are small, circular pieces of DNA found in bacteria that are separate from the main bacterial chromosome. They often contain genes for traits like drug resistance and can be transmitted between bacteria. Plasmids are used in genetic engineering and recombinant DNA techniques to transfer genes between organisms. Their discovery in the early 20th century expanded understanding of heredity, and they continue to be important tools for cloning and altering organisms through recombinant DNA. Different types of plasmids carry various traits or help with integration into chromosomes.
Genetic engineering uses enzymes to cut and join DNA strands, allowing scientists to insert specific genes from one organism into another. Plasmids are small, circular DNA molecules that naturally occur in bacteria and can contain genes. Plasmids can replicate independently of the bacterial chromosome and can carry genes that provide bacteria with useful traits like antibiotic resistance. Scientists use plasmids to move genes between organisms by inserting the gene of interest into a plasmid and introducing this into the host organism.
Plasmids are autonomously replicating extrachromosomal DNA molecules that are commonly found in bacterial cells. They allow for the horizontal transfer of genes between bacteria, providing genetic variation and increasing the likelihood that adaptive traits will persist in the population under environmental pressures. Plasmids can carry a variety of genes, such as those conferring antibiotic resistance or enabling bacterial conjugation. They are manipulated in the laboratory by inserting foreign DNA fragments using restriction enzymes and ligase.
Bacterial plasmids are small, circular pieces of DNA that are separate from the bacterial chromosome. Plasmids commonly contain genes that provide useful traits to bacteria like antibiotic resistance, but are not essential for survival. Plasmids can be transferred between bacteria through conjugation. There are different types of plasmids classified by their functions, such as fertility plasmids involved in conjugation, resistance plasmids containing antibiotic resistance genes, and virulence plasmids that can make bacteria pathogenic. Plasmids are useful in genetic engineering and cloning because they can be easily manipulated in the laboratory by inserting foreign DNA fragments using restriction enzymes and ligase. This allows bacteria to produce proteins like human insulin.
Plasmid vectors are circular, self-replicating DNA molecules that are commonly used to clone DNA fragments in bacteria. The document discusses the key features of plasmid vectors including their origin of replication, selectable marker genes, and cloning sites. It also describes different types of plasmids such as F-plasmids, R-plasmids, and Ti-plasmids. Common plasmid vectors used in genetic engineering like pUC19, pBR322, and Ti-plasmids are also outlined. Finally, the applications of plasmids in genetic engineering for cloning genes and mass producing proteins are briefly mentioned.
Here are the key steps to open the plasmid polylinker using restriction enzymes:
1. Digest the plasmid with EcoRI and HindIII restriction enzymes and their appropriate buffer.
2. This will cut the plasmid at the EcoRI and HindIII sites, linearizing the plasmid and removing a 51 bp fragment from the polylinker region.
3. Run the digested plasmid on an agarose gel to separate the linearized plasmid from the excised 51 bp fragment.
4. Isolate the linearized plasmid from the gel using a gel extraction kit. This prepares the plasmid with overhangs compatible for ligation of the insert.
The restriction digestion opens up the polylinker region, making room for the insert DNA to
The document discusses plasmids, which are small DNA molecules found in bacteria that can replicate independently of the bacterial chromosome. Plasmids contain genes and can be transferred between bacteria. They have various functions like carrying antibiotic resistance genes or virulence genes. Plasmids are commonly used as cloning vectors in genetic engineering to make copies of genes and produce proteins of interest.
This document discusses various features of gardening, including garden walls, fencing, steps, drives and paths, hedges, and how to start a hedge. It provides details on constructing garden walls, different types of fencing materials, considerations for steps, and methods for gravel, asphalt, concrete, brick, stone, grass, and crazy paving drives and paths. It also outlines purposes of hedges, criteria for selecting hedge plants, and how to prepare the land and plant a hedge.
The document discusses the General Agreement on Trade in Services (GATS), which extended the multilateral trading system to the service sector. It covers the history of GATS, its main principles and scope, related sectors and sub-sectors, modes of trade, provisions regarding public services and domestic regulation, and implications for the health care system. The goal of GATS is progressive liberalization of trade in services through negotiation rounds to expand commitments over time.
This document summarizes 9 pests that affect cardamom plants: 1) Thrips, 2) Shoot, panicle and capsule borer, 3) Capsuleborers, 4) Beetleborer, 5) Hairy caterpillars, 6) Shoot fly, 7) Whiteflies, 8) Cardamom aphid, 9) Root grubs. For each pest, it describes symptoms of damage and life stages. Management strategies include regulating shade, removing infected plant parts, applying insecticides like quinalphos, fenthion, and phosalone. Timing of management is important to target pest life stages and periods of high abundance.
The document summarizes information about tea plants and the process of manufacturing tea. It discusses that tea comes from the Camellia sinensis plant and describes the two main varieties, China and Assam. It then outlines the steps involved in manufacturing tea, including withering, rolling, fermentation, drying, and grading. Key steps are withering to reduce moisture, rolling to break plant cells and allow enzymatic reactions, and fermentation to produce the colors and flavors characteristic of tea.
Prime-ome: "A molecular approach towards defense priming"Dhanya AJ
Prime-ome is the entire set of messenger RNA (mRNA) molécules or transcripts, proteins and metabolites produced or modified by an organism or system during the different stages of priming in plants and prime-omics is the study of prime-ome.
Self-incompatibility refers to the inability of a plant with functional pollen to set seeds when self pollinated. It is the failure of pollen from a flower to fertilize the same flower or other flowers of the same plant.
This presentation includes, Single-locus self-incompatibility- {Gametophytic self-incompatibility (GSI) and Sporophytic self-incompatibility (SSI)},2-locus gametophytic self-incompatibility, Heteromorphic self-incompatibility,Cryptic self-incompatibility (CSI) and Late-acting self-incompatibility (LSI).
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
Immersive Learning That Works: Research Grounding and Paths ForwardLeonel Morgado
We will metaverse into the essence of immersive learning, into its three dimensions and conceptual models. This approach encompasses elements from teaching methodologies to social involvement, through organizational concerns and technologies. Challenging the perception of learning as knowledge transfer, we introduce a 'Uses, Practices & Strategies' model operationalized by the 'Immersive Learning Brain' and ‘Immersion Cube’ frameworks. This approach offers a comprehensive guide through the intricacies of immersive educational experiences and spotlighting research frontiers, along the immersion dimensions of system, narrative, and agency. Our discourse extends to stakeholders beyond the academic sphere, addressing the interests of technologists, instructional designers, and policymakers. We span various contexts, from formal education to organizational transformation to the new horizon of an AI-pervasive society. This keynote aims to unite the iLRN community in a collaborative journey towards a future where immersive learning research and practice coalesce, paving the way for innovative educational research and practice landscapes.
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...Travis Hills MN
Travis Hills of Minnesota developed a method to convert waste into high-value dry fertilizer, significantly enriching soil quality. By providing farmers with a valuable resource derived from waste, Travis Hills helps enhance farm profitability while promoting environmental stewardship. Travis Hills' sustainable practices lead to cost savings and increased revenue for farmers by improving resource efficiency and reducing waste.
Describing and Interpreting an Immersive Learning Case with the Immersion Cub...Leonel Morgado
Current descriptions of immersive learning cases are often difficult or impossible to compare. This is due to a myriad of different options on what details to include, which aspects are relevant, and on the descriptive approaches employed. Also, these aspects often combine very specific details with more general guidelines or indicate intents and rationales without clarifying their implementation. In this paper we provide a method to describe immersive learning cases that is structured to enable comparisons, yet flexible enough to allow researchers and practitioners to decide which aspects to include. This method leverages a taxonomy that classifies educational aspects at three levels (uses, practices, and strategies) and then utilizes two frameworks, the Immersive Learning Brain and the Immersion Cube, to enable a structured description and interpretation of immersive learning cases. The method is then demonstrated on a published immersive learning case on training for wind turbine maintenance using virtual reality. Applying the method results in a structured artifact, the Immersive Learning Case Sheet, that tags the case with its proximal uses, practices, and strategies, and refines the free text case description to ensure that matching details are included. This contribution is thus a case description method in support of future comparative research of immersive learning cases. We then discuss how the resulting description and interpretation can be leveraged to change immersion learning cases, by enriching them (considering low-effort changes or additions) or innovating (exploring more challenging avenues of transformation). The method holds significant promise to support better-grounded research in immersive learning.
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
Current Ms word generated power point presentation covers major details about the micronuclei test. It's significance and assays to conduct it. It is used to detect the micronuclei formation inside the cells of nearly every multicellular organism. It's formation takes place during chromosomal sepration at metaphase.
The debris of the ‘last major merger’ is dynamically youngSérgio Sacani
The Milky Way’s (MW) inner stellar halo contains an [Fe/H]-rich component with highly eccentric orbits, often referred to as the
‘last major merger.’ Hypotheses for the origin of this component include Gaia-Sausage/Enceladus (GSE), where the progenitor
collided with the MW proto-disc 8–11 Gyr ago, and the Virgo Radial Merger (VRM), where the progenitor collided with the
MW disc within the last 3 Gyr. These two scenarios make different predictions about observable structure in local phase space,
because the morphology of debris depends on how long it has had to phase mix. The recently identified phase-space folds in Gaia
DR3 have positive caustic velocities, making them fundamentally different than the phase-mixed chevrons found in simulations
at late times. Roughly 20 per cent of the stars in the prograde local stellar halo are associated with the observed caustics. Based
on a simple phase-mixing model, the observed number of caustics are consistent with a merger that occurred 1–2 Gyr ago.
We also compare the observed phase-space distribution to FIRE-2 Latte simulations of GSE-like mergers, using a quantitative
measurement of phase mixing (2D causticality). The observed local phase-space distribution best matches the simulated data
1–2 Gyr after collision, and certainly not later than 3 Gyr. This is further evidence that the progenitor of the ‘last major merger’
did not collide with the MW proto-disc at early times, as is thought for the GSE, but instead collided with the MW disc within
the last few Gyr, consistent with the body of work surrounding the VRM.
When I was asked to give a companion lecture in support of ‘The Philosophy of Science’ (https://shorturl.at/4pUXz) I decided not to walk through the detail of the many methodologies in order of use. Instead, I chose to employ a long standing, and ongoing, scientific development as an exemplar. And so, I chose the ever evolving story of Thermodynamics as a scientific investigation at its best.
Conducted over a period of >200 years, Thermodynamics R&D, and application, benefitted from the highest levels of professionalism, collaboration, and technical thoroughness. New layers of application, methodology, and practice were made possible by the progressive advance of technology. In turn, this has seen measurement and modelling accuracy continually improved at a micro and macro level.
Perhaps most importantly, Thermodynamics rapidly became a primary tool in the advance of applied science/engineering/technology, spanning micro-tech, to aerospace and cosmology. I can think of no better a story to illustrate the breadth of scientific methodologies and applications at their best.
The technology uses reclaimed CO₂ as the dyeing medium in a closed loop process. When pressurized, CO₂ becomes supercritical (SC-CO₂). In this state CO₂ has a very high solvent power, allowing the dye to dissolve easily.
Or: Beyond linear.
Abstract: Equivariant neural networks are neural networks that incorporate symmetries. The nonlinear activation functions in these networks result in interesting nonlinear equivariant maps between simple representations, and motivate the key player of this talk: piecewise linear representation theory.
Disclaimer: No one is perfect, so please mind that there might be mistakes and typos.
dtubbenhauer@gmail.com
Corrected slides: dtubbenhauer.com/talks.html
Unlocking the mysteries of reproduction: Exploring fecundity and gonadosomati...AbdullaAlAsif1
The pygmy halfbeak Dermogenys colletei, is known for its viviparous nature, this presents an intriguing case of relatively low fecundity, raising questions about potential compensatory reproductive strategies employed by this species. Our study delves into the examination of fecundity and the Gonadosomatic Index (GSI) in the Pygmy Halfbeak, D. colletei (Meisner, 2001), an intriguing viviparous fish indigenous to Sarawak, Borneo. We hypothesize that the Pygmy halfbeak, D. colletei, may exhibit unique reproductive adaptations to offset its low fecundity, thus enhancing its survival and fitness. To address this, we conducted a comprehensive study utilizing 28 mature female specimens of D. colletei, carefully measuring fecundity and GSI to shed light on the reproductive adaptations of this species. Our findings reveal that D. colletei indeed exhibits low fecundity, with a mean of 16.76 ± 2.01, and a mean GSI of 12.83 ± 1.27, providing crucial insights into the reproductive mechanisms at play in this species. These results underscore the existence of unique reproductive strategies in D. colletei, enabling its adaptation and persistence in Borneo's diverse aquatic ecosystems, and call for further ecological research to elucidate these mechanisms. This study lends to a better understanding of viviparous fish in Borneo and contributes to the broader field of aquatic ecology, enhancing our knowledge of species adaptations to unique ecological challenges.
aziz sancar nobel prize winner: from mardin to nobel
Bacterial plasmid
1. ANAND AGRICLTURAL UNIVERSITY
B. A. COLLEGE OF AGRICULTURE
GP-501 :- Principles Of Genetics (2+1)
Course Teacher: Dr. M. B. Patel
Topic: Bacterial Plasmids
Prepared By,
Dhanya A J,
[ Reg. No: 04-2348-2014 ],
M. Sc. (Agri) Plant Molecular -
Biology & Biotechnology
2. Bacterial Plasmids
A plasmid is a short, usually
circular, and double- stranded
segment of DNA that is found in the
cytoplasm separate from the main
bacterial chromosome.
The term plasmid was first
introduced by
the American molecular
biologist Joshua Lederberg in
1952.
3. The bacterial chromosome and bacterial plasmids, as shown
in the electron microscope. The plasmids(arrow) are the
circular structures, much smaller than the main
chromosomal DNA.
4. Plasmids carry genes that direct their own replication and
additional factors that ensure that the copies get separated
into the new daughter cells. This ensures that the plasmids
are not lost from the cells during binary fission.
Plasmid Replication
5. As long as the bacterium is thriving in a low-stress
environment, removing all the plasmids would not
affect the ability of the bacterium to survive.
Specifically, plasmids are nonessential,
extrachromosomal pieces of DNA.
Plasmid sizes vary from 1 to over 1,000 kbp.
They usually contain 5 to 100 genes and
usually carry genes that are useful but not
essential to survival: e.g. genes which make
bacteria resistant to antibiotics.
Plasmid features
6.
7. Classification Of Plasmids.
I.Based on their ability to transfer to other
bacteria.
a) Conjugative plasmids - contain tra genes,
which perform the complex process
of conjugation, the transfer of plasmids to
another bacterium.
e.g., F plasmid, many R plasmid & some Col
plasmid.
8. b) Non-conjugative plasmids - incapable of
initiating conjugation, hence they can be
transferred only with the assistance of
conjugative plasmids.
e. g., many R plasmid & most Col plsmid.
c) Mobilisable plasmid - An intermediate
class of plasmid. They carry only a subset of
the genes required for transfer. They can
parasitize another plasmid, transferring at
high frequency in the presence of a
conjugative plasmid.
10. II.Based on function.
a) Degradative plasmids – They are able to
digest unusual substances like toluene and
salicylic acid.
e.g.,TOL plasmid of Psedomonas putida.
b) Virulence plasmids –contains vir genes
which turn the bacterium into a pathogen.
e. g., Ti & Ri plasmids
c) Fertility (F)-plasmids - contain tra genes.
They are capable of conjugation and result
in the expression of sex pilli.
Example: F plasmid of E. coli.
11.
12. d) Resistance (R)plasmids – contain
genes that provide resistance
against antibiotics or poisons.
Historically known as R-factors, before
the nature of plasmids was understood.
e. g., pRP4 of Pseudomonas sp.
e) Col plasmids - contain genes that code
for bacteriocins & toxins that can kill other
bacteria.
e. g., ColE1
13. III. Based on copy number.
a) Stringent Plasmid – It replicates only
along with the main bacterial
chromosome & is present as a single
copy, or at most several copies, per cell.
a) Relaxed Plasmid – It replicates within a
cell independently of the chromosomal
DNA replication. Thus multiple copies of
plasmids are present.
14. IV.Based on compatibility
It is possible for plasmids of different types to
coexist in a single cell. Several different
plasmids have been found in E. coli. However,
related plasmids are often incompatible, in the
sense that only one of them survives in the
cell line, due to the regulation of vital plasmid
functions. Thus, plasmids can be assigned
into incompatibility groups.
15. Plasmids serve as important tools in genetics and
biotechnology labs, where they are commonly used
to multiply (make many copies of) or express
particular genes.
Disease Models - Plasmids were historically used
to genetically engineer the embryonic stem cells of
rats in order to create rat genetic disease models.
Uses of plasmids
16. Another major use of plasmids is to make
large amounts of proteins. In this case,
researchers grow bacteria containing a plasmid
harboring the gene of interest.
eg: insulin & antibiotics.
Gene therapy- plasmid vectors are used for
the insertion of therapeutic genes at pre-
selected chromosomal target sites within the
human genome.