Protein targeting or protein sorting is the mechanism by which a cell transports to the appropriate positions in the cell or outside of it. Both in prokaryotes and eukaryotes, newly synthesized proteins must be delivered to a specific sub-cellular location or exported from the cell for correct activity. This phenomenon is called protein targeting. Protein targeting is necessary for proteins that are destined to work outside the cytoplasm.This delivery process is carried out based on information contained in the protein itself. Correct sorting is crucial for the cell; errors can lead to diseases. In 1970, Günter Blobel conducted experiments on the translocation of proteins across membranes. He was awarded the 1999 Nobel Prize for his findings. He discovered that many proteins have a signal sequence, that is, a short amino acid sequence at one end that functions like a postal code for the target organelle.
A membrane protein is a protein molecule that is attached to, or associated with the membrane of a cell or an organelle.
More than half of all proteins interact with membranes.
Protein targeting or protein sorting is the mechanism by which a cell transports to the appropriate positions in the cell or outside of it. Both in prokaryotes and eukaryotes, newly synthesized proteins must be delivered to a specific sub-cellular location or exported from the cell for correct activity. This phenomenon is called protein targeting. Protein targeting is necessary for proteins that are destined to work outside the cytoplasm.This delivery process is carried out based on information contained in the protein itself. Correct sorting is crucial for the cell; errors can lead to diseases. In 1970, Günter Blobel conducted experiments on the translocation of proteins across membranes. He was awarded the 1999 Nobel Prize for his findings. He discovered that many proteins have a signal sequence, that is, a short amino acid sequence at one end that functions like a postal code for the target organelle.
A membrane protein is a protein molecule that is attached to, or associated with the membrane of a cell or an organelle.
More than half of all proteins interact with membranes.
This presentation gives an overview of Lipid Rafts, how it was discovered, its importance and the future research in this area,Feel free to comment and ask any questions
Recepter mediated endocytosis by kk ashuKAUSHAL SAHU
INTRODUCTION
DEFINITION OF RECEPTOR MEDIATED ENDOCYTOSIS
WHAT TYPE OF LIGANDS ENTER BY RME?
FORMATION OF CLATHRIN-COATED VESICLES
TRISKELIONS
ROLE OF DYNAMIN IN THE FORMATION OF CLATHRIN-COATED VESICLES
ROLE OF PHOSPHOLIPIDS IN THE FORMATION OF COATED VESICLES
ENDOCYTIC PATHWAY
LDLs AND CHOLESTROL METABOLISM
CONCLUSION
REFERENCES
Protein targeting or protein sorting is the biological mechanism by which proteins are transported to their appropriate destinations in the cell or outside it. Proteins can be targeted to the inner space of an organelle, different intracellular membranes, plasma membrane, or to exterior of the cell via secretion.
Folding depends upon sequence of Amino Acids not the Composition. Folding starts with the secondary structure and ends at quaternary structure.
Denaturation occur at secondary, tertiary & quaternary level but not at primary level.
This presentation gives an overview of Lipid Rafts, how it was discovered, its importance and the future research in this area,Feel free to comment and ask any questions
Recepter mediated endocytosis by kk ashuKAUSHAL SAHU
INTRODUCTION
DEFINITION OF RECEPTOR MEDIATED ENDOCYTOSIS
WHAT TYPE OF LIGANDS ENTER BY RME?
FORMATION OF CLATHRIN-COATED VESICLES
TRISKELIONS
ROLE OF DYNAMIN IN THE FORMATION OF CLATHRIN-COATED VESICLES
ROLE OF PHOSPHOLIPIDS IN THE FORMATION OF COATED VESICLES
ENDOCYTIC PATHWAY
LDLs AND CHOLESTROL METABOLISM
CONCLUSION
REFERENCES
Protein targeting or protein sorting is the biological mechanism by which proteins are transported to their appropriate destinations in the cell or outside it. Proteins can be targeted to the inner space of an organelle, different intracellular membranes, plasma membrane, or to exterior of the cell via secretion.
Folding depends upon sequence of Amino Acids not the Composition. Folding starts with the secondary structure and ends at quaternary structure.
Denaturation occur at secondary, tertiary & quaternary level but not at primary level.
Receptors are the sensing elements in the system of chemical communications that coordinates the function of all the different cells in the body and receptor is a protein molecule, embedded in either the plasma membrane or the cytoplasm of a cell, to which one or more specific kinds of signaling molecules may attach.
Endocytosis is a cellular process in which substances are brought into the cell
It is of three types
1. PHAGOCYTOSIS
2. PINOCYTOSIS
3. RECEPTOR MEDIATED ENDOCYTOSIS
Plasma Membrane Structure- A Brief Description of Membrane Lipids & Proteins.Arindam Sain
Cells are separated from the external world by a thin, fragile structure called the plasma membrane that is only 5 to 10 nm wide. Here we present a brief description of the Plasma Membrane structure. We also discussed different membrane lipids & proteins.
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Singer and Nicolson proposed the fluid mosaic model of the cell membr.pdfbrijeshagarwa329898l
Singer and Nicolson proposed the fluid mosaic model of the cell membrane The main type of
membrane lipids: phospholipids, glycolipids, and sterols could be represented with the
respectively membrane lipids phosphoglycerides, cerebrosides and cholesterol. In E. coli the
enzyme responsible for creating unsaturated bonds from saturated ones in the fatty adds of the
cell membrane is denaturize Substances that can readily pass through the cell membrane are
chemically hydrophobic or nonpolar in nature. Transmembrane proteins involved in detecting
external stimuli and relaying that Information to the cell are most likely receptor proteins. The
current understanding of the membranes of the cell is based on the fluid mosaic model. The
ability of some organisms to alter their membrane lipid composition in response to temperature is
known as homeoviscous adaptation The technique of transferring proteins from SDS-PAGE gels
onto a membrane and using labeled antibodies to identify particular proteins is known as western
blot Triglycerides are composed of three fatty acids attached to a molecule of glycerol
Solution
Ans. 1. True. They proposed the model in 1972, and were awarded Nobel prize for it.
Ans. 2. True
Phospholipids = phsophoglycerides
Sterol = cholesterol
Glycolipids are lipids containing covalently linked carbohydrate moieties.
Cerebrosides, also known as, glycosphingolipids, also contain glucose or galactose residues
linked to the ceramide (lipid) skeleton. Thus, cerebrosides are also glycolipid in nature because
have carbohydrate moieties linked to lipid.
Ans. 3. True
Fatty acid desaturase creates double bond (unsaturation) in fatty acids by removing two H-atoms
from adjacent carbo atoms in the chain.
Ans. 4. True
Since the lipid bilayer has a hydrophobic core, small, non-polar or hydrophobic molecules (for
example, CO2) can readily pass through it.
In contrast to it, polar or charged ion/ molecules or large molecules (non-polar as well as polar)
can’t pass through the membrane so efficiently.
Ans. 5. True
Receptor proteins need to bind an effector molecule at the extracellular face and transmit the
signal to cytoplasmic side of the cell. Thus, it shall be a transmembrane protein, i.e. a protein that
spans the lipid bilayer.
Ans. 6. True
Ans. 7. True
Many organism can change the lipid composition of the membrane depending of the
environmental temperature. The phenomenon being called “homeoviscous adaptation”.
For example, in winters, the membrane of a plant cell also retains the fluid-nature under freezing
conditions. Relatively larger abundance of cis-fatty acids, unsaturated fatty acid in the
phospholipids and steroids makes the membrane more fluid because both cis-form and
unsaturation makes the chain irregular-shaped and hinders the close packing of hydrophobic
core. So, such membrane retain fluidity even at very low temperatures.
Ans 8. True
Western blot detects specific protein through combined use of SDS-PAGE and immunoblotting
technique.
Living material is organized in unit and microorganism were living form of microscopical size and usually unicellular in structure originally classification is unsatisfied.
Similar to Receptor mediated endocytosis by kk (20)
Introduction
History
Tumor suppressor gene- pRB
- RB gene
- Role of RB in regulation of cell cycle
- Tumor associated with RB gene mutation
Tumor suppressor gene- p53
- What is p53 gene?
- Function of p53 gene
- How it regulates cell cycle
- What happen if p53 gene inactivated
- Cancer associated with p53 mutation
- Conclusion
- References
Introduction
Definition
History
Two hit hypothesis
Functions
Mutation in tumor suppressor genes
What is mutation
Inherited mutation of TSGs
Acquired mutation of TSGs
What is Oncogenes?
TSGs and Oncogenes : Brakes and accelerators
Stop and go signal
Examples of TSGs:
RB-The retinoblastoma gene
P53 protein
TSGs &cell suicide
Conclusion
References
Introduction
Protein synthesis
Synthesis of secretory proteins on membrane-bound ribosomes
Processing of newly synthesized proteins in the ER
Synthesis of integral membrane protein on membrane bound ribosomes
Maintenance of membrane asymmetry
Conclusion
Reference
Introduction
Definition
Factors required for Translation
Formation of aminoacyl t-RNA
1)Activation of amino acid
2) Transfer of amino acid to t-RNA
Translation involves following steps:-
1)Initiation
2)Elongation
3)Termination
Conclusion
Reference
Introduction
Definition
History
central dogma
Major components
mRNA,tRNA,rRNA
Energy source
Amino acids
Protien factor
Enzymes
Inorganic ions
Step involves in translation:
Aminoacylation of tRNA
Initiation
Elongation
termination
Importance of translation
Conclusion
Reference
Introduction
Protein modifications
Folding
Chaperon mediated
Enzymatic
Cleavage
Addition of functional groups
Chemical groups
Hydrophobic groups
Proteolysis
Conclusion
Reference
INTRODUCTION
HISTORY
WHAT IS TRANSCRIPTION
PROKARYOTIC TRANSCRIPTION
STEPS OF TRANSCRIPTION
HOW TRANSCRIPTION OCCURS
PROCESS OF TRANSCRIPTION
Initiation
Elongation
Termination
CONCLUSION
REFRENCES
Enzyme Kinetics and thermodynamic analysisKAUSHAL SAHU
Introduction
Kinetics and thermodynamicSG
Thermodynamic in enzymatic reactions
balanced equations in chemical reactions
changes in free energy determine the direction & equilibrium state of chemical reactions
the rates of reactions
Factors effecting enzymatic activity
(i) Enzyme concentration.
(ii) Substrate concentration.
(iii)Temperature
(iv) pH.
(v) Activators.
(vi)Inhibitors
Michaelis-menten equation
CONCLUSIONS
REFERENECES
The delivery of newly synthesized protein to their proper cellular destination, usually referred to as protein targeting or sorting.
The mode of protein transport depends chiefly on the location in the cell cytoplasm of the polysomes involved in protein synthesis.
There are two modes of protein sorting:-
1) Co - translational Transportation.
2) Post - translational Transportation.
Prokaryotic translation machinery by kk KAUSHAL SAHU
Introduction
Definition
Factors required for Translation
Formation of aminoacyl t-RNA
1)Activation of amino acid
2) Transfer of amino acid to t-RNA
Translation involves following steps:-
1)Initiation
2)Elongation
3)Termination
Conclusion
Reference
INTRODUCTION.
HISTORY.
PROCESS OF TRANSCRIPTION.
STAGES OF TRANSCRIPTION.
ENZYME INVOLVES IN TRANSCRIPTION.
TERMINATION.
PROKARYOTES.
Transcription terminators.
EUKARYOTES.
Two models for termination.
CONCLUSION.
REFERENCES.
Transcription in eukariotes by kk sahuKAUSHAL SAHU
INTRODUCTION
A STRUCTURAL GENE
EUKARYOTIC RNAPs
MACHANISM OF TRANSCRIPTION IN EUKARYOTES:
- INITIATION
-ELONGATION
-TERMINATION
RNA SPLISING
DIFFERENT BETWEEN PROKARYOTIC & EUKARYOTIC TRANSCRIPTION
BIBLIOGRAPHY
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
This pdf is about the Schizophrenia.
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Astronomy Update- Curiosity’s exploration of Mars _ Local Briefs _ leadertele...
Receptor mediated endocytosis by kk
1. By
KAUSHAL KUMAR SAHU
Assistant Professor (Ad Hoc)
Department of Biotechnology
Govt. Digvijay Autonomous P. G. College
Raj-Nandgaon ( C. G. )
2. Synopsis
1. Introduction
2. History
3. Endocytosis Pathways
Clathrin mediated endocytosis
Caveolae
Pinocytosis
Phagocytosis
4. RECEPTOR mediated endocytosis
i. Types of ligands
ii. Types of receptor
iii. Formation of clathrin coated vesicle
iv. Early endosome
v. Late endosome
vi. Lysosomes
5. Genetic disease
LDL Receptor
6. Conclusion
7. References
3. 1. Introduction
Receptor mediated endocytosis(RME)
also called clathrin dependent
endocytosis, is a process by which cells
internalize molecules(endocytosis) by the
inward budding of plasma membrane
vesicles containing protein with receptor
sites specific to the molecules being
internalized
5. Endocytosis pathways
Endocytosis pathways could be subdivided into 4
catagories:
I. Clathrin mediated endocytosis
II. Caveolae
III.Pinocytosis
IV.Phagocytosis
I. Clathrin mediated endocytosis Clathrin mediated endocytosis
is mediated by small( approx. 100
nm in diameter) vesicles that have
a morphologically characteristic
crystalline coat made up of a
complex of protein.
Eg. Low density lipoprotein(LDL)
Growth factors
Antibodies
6. II. Caveolae
Caveolae are the most common reported non-
clathrin coated plasma membrane buds which exist
on the surface of many but not all cell types.
Caveolae are small (approx. 50 nm in diameter)
flask shape of a cave hance the name caveolae.
Eg. Adipocytes.
7. III. Pinocytosis:
Pinocytosis, which usually occurs from
highly ruffled region of the plasma
membrane is the invagination of the cell
membrane to form a pocket.
Size of vesicle(0.5-5 micro meter in
diameter)
8. IV. Phagocytosis
Phagocytosis is the process by which cells bind &
internalize particulate matter layer than around 0.75
micro meter in diameter.
Such as small sized dust particles, cell dabris,
microorganism & even apoptosis cells.
9. Receptor mediated endocytosis
i. Types of ligands
ii. Types of receptor
iii. Formation of clathrin coated vesicle
iv. Early endosome
v. Late endosome
vi. Lysosomes
I. Types of ligands:
Biological molecules(Proteins, Corbohydrates,
lipids)
Ions
Microoganisms(Viruses, Bacteria)
10. Types of Receptor:
More than 20 different types of receptor
LDL Receptor
Formation of clathrin coated vesicle:
Clathrin is a protein plays a major role in the formation
of coated vesicles.
Clathrin was 1st isolated & named by Barbara Pearse in
1975.
11.
12. Early Endosomes:
Early endosomes are the 1st station of the
endocytic pathway.
Vesicles up to 1 micro meter in diameter with
connected tubules of approx. 50 nm in diameter.
Acidic pH (6.0-6.5)
Late Endosomes:
Late endosomes resive internalized material to
lysosomes, usually from early endosome in the
endocytic pathway, from the trans- Golgi
network(TGN) in the biosynthesis pathway &
from phagosomes in the phagocytic pathway.
They are acidic (Approx.pH 5.5)
13. Lysosomes:
Lysosomes are the last compartment of
the endocytic pathway.
They are acidic pH 4.8-5.0
They have a high content of lysosomal
membrane protein & active lysosomal
hydrolases.
14. Genetic disease
The Low – density of
lipoprotein or LDL
Receptor:
Cholesterol is
transpoted through the
blood stream in the
form of lipoprotein
particles, the most
common of which is
LDL.
In 1972 Michael Brown
Structure of LDL
15. Familial Hypercholesterolemia(FH)
FH is a genetic disease in which patients
have greatly elevated level of serum
cholesterol and suffer from heart attacks
early in life.
Michael Brown and Goldstein in1972
The Experiments:
In 1974 Brown and Goldstein
They investigated the binding of radio labeled
LDL to fibroblast from either normal individuals or
FH patients.
Increasing amount of radio active LDL bound to
normal cell as a function of incubation time.
16.
17. Results:
The cells of FH patients, failed to specifically bind radio
active LDL.
Accounting for the inability of LDL to inhibit HMG-coA
reductase (3-hydroxy-3-methyglutaryl coenzyme A
reductase)and the resultant over production of cholesterol.
18. Conclusion
The human spleen & liver which are
responsible for the disposal of more than
1011 aged blood cells on a daily basis.
Approx. 50% of the plasma membrane
is internalized receptor mediated
endocytosis every hour.
19. References :
THE CELL { A Molecular Approach, Fourth
Edition}
Geoffrey M. Copper
Robert E. Hausman
www.ncbi.com
www.cytochemistry.net/cellbiology