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Isomers
Isomers: different compounds with the
same molecular formula
Constitutional isomers: isomers with a
different connectivity
Stereoisomers: isomers with the same
molecular formula, the same connectivity
but a different orientation of their atoms in
space that cannot be interconverted by
rotation about a single bond


                                            2
Isomerism → Constitutional
Isomers and Stereoisomers
 Stereoisomers are isomers with the same
 molecular formula and same connectivity of
 atoms but different arrangement of atoms
 in space




                                              3
Stereochemistry
is the chemistry of molecules in three dimension




                                               4
Handedness
Stereochemistry of organic molecules can be
understood, if we understand the meaning of
handedness
the fundamental reason for this is that our
hands are not identical, rather they are mirror
images




                                              5
Chirality




The mirror image         Objects which are chiral have a
of a chiral object is    sense of “handedness” and
different and will not   exist in two forms.
superimpose on the
original object.
                                                     6
The reason for Handedness→ chirality
• Although everything has a mirror image, mirror images
  may or may not be superimposable.
• Some molecules are like hands. Left and right hands are
  mirror images, but they are not identical, or
  superimposable → chiral (property of handedness)




                                                     7
Mirror Image




               8
Chirality and Nonchirality
Mirror image: the reflection of an object in a
mirror
Objects that are not superposable on their mirror
images are said to be chiral, that is, they show
handedness
Objects that are superposable on their mirror
images are said to be achiral, that is, they do not
show handedness. An achiral object has at least
one element of symmetry


                                                  9
Achiral Molecules
• Do these molecules contain a Plane of Symmetry (Mirror Plane)?




                                                              10
Chiral Molecules
• The molecule labeled A and its mirror image labeled B
  are not superimposable. No matter how you rotate A and
  B, all the atoms never align. Thus, CHBrClF is a chiral
  molecule, and A and B are different compounds.
• A and B are stereoisomers—specifically, they are
  enantiomers.
• A carbon atom with four different groups is a tetrahedral
  stereogenic center.




                                                       11
Chiral vs. Achiral
• With one stereogenic center, a molecule
  will always be chiral.

• With two or more stereogenic centers, a
  molecule may or may not be chiral, e.g.
  Meso compound (contains a plane of
  symmetry or a mirror plane)




                                        12
Chiral vs. Achiral
Chiral: from the Greek, cheir, hand
  an object that is not superposable on its mirror
  image
Achiral: an object that lacks chirality; one that
lacks handedness
  an achiral object has at least one element of
  symmetry
  plane of symmetry: an imaginary plane passing
  through an object dividing it so that one half is the
  mirror image of the other half
  center of symmetry: a point so situated that
  identical components are located on opposite
  sides and equidistant from that point along the
  axis passing through it

                                                     13
Elements of Symmetry
Symmetry in objects




                        14
Plane of Symmetry or Mirror plane




                                15
TWO VIEWS OF THE PLANE OF SYMMETRY

               plane of
               symmetry

      F                       F

                      Cl          Cl
Br             Cl
                             Br
          Cl
 F     side                edge
 Cl
 Br    view                view
Plane of Symmetry


    Symmetry plane      No symmetry plane
  COOH                 CH3
H C H                H C OH
  COOH                 COOH


 achiral              chiral


                                     17
Elements of Symmetry

Center of symmetry: a point so situated
that identical components of the object are
located equidistant on opposite sides and
equidistant from the point along any axis
passing through the point

              Br
                      H

Cl
                          Cl

     H             center of
         Br        symmetry
                                         18
Chiral Center
The most common (but not the only)
cause of chirality in organic molecules is
a tetrahedral atom, most commonly
carbon, bonded to four different groups

A carbon with four different groups
bonded to it is called a chiral center
  all chiral centers are stereocenters, but not
  all stereocenters are chiral centers.



                                                  19
STEREOGENIC CARBON ATOMS
Stereogenic Carbon Atoms


          Cl           This is one type of ….
                          stereocenter
                              …. others are possible




 H              F
               Br
 A stereogenic carbon is tetrahedral and
 has four different groups attached.
                                                       21
Stereogenic Centers
• To locate a stereogenic center, examine the four
  groups—not the four atoms—bonded to each tetrahedral
  carbon atom in a molecule.
• Omit from consideration all C atoms that cannot be
  tetrahedral stereogenic centers. These include
    • Methylene and methyl units, i. e. CH2 and CH3 groups
      respectively.
    • Any sp or sp2 hybridized Carbons, e.g. triple bonds,
      and double bonds in alkenes (C=C) and carbonyls
      (C=O).




                                                     22
Enantiomers

              23
Enantiomers

One of a pair of molecular species that
are mirror images of each other and
not superposable.

They are mirror-image stereoisomers.



                                       24
Drawing Enantiomers
• To draw both enantiomers of a chiral compound such as
  2-butanol, use the typical convention for depicting a
  tetrahedron: place two bonds in the plane, one in front of
  the plane on a wedge, and one behind the plane on a
  dash. Then, to form the first enantiomer, arbitrarily place
  the four groups—H, OH, CH3 and CH2CH3—on any bond
  to the stereogenic center. Then draw the mirror image.




                                                        25
Pairs of Enantiomers




                       26
Enantiomers

                Cl                     Cl      rotate



       H          F             F
                 Br             Br             H

this molecule        Cl
is chiral                            note that the fluorine
                                     and bromine have been
                                     interchanged in the

                 H         Br        enantiomer

                          F                        27
Enantiomers

              HO        O      O         OH
Lactic acid        C                 C

                   C                 C
              HO        H      H         OH
                       CH 3   H3 C




                                         28
Enantiomers
3-Chlorocyclohexene
                Cl    Cl




                           29
Enantiomers
                                        OH
                                     CH 3 CHCH 2 OH
1,2-propanediol
        OH                       OH

 H3 C   C    CH 2 OH   HOH 2 C   C     CH 3

        H                        H




                                              30
Enantiomers
A nitrogen chiral center


                +                     +
                N                     N
         H3 C       CH2 CH3   CH3 CH2 CH3
                A pai r of enanti omers




                                            31
Enantiomers &
Diastereomers
            32
Enantiomers & Diastereoisomer
   Enantiomers: opposite configurations at
   all stereogenic centers.
   Diastereomers: Stereoisomers that are
   not mirror images of each other.
   Different configuration at some
   locations.



                                         33
Two Stereocenters
          Cl Br                        Br Cl
                                                        d
H3C                  CH3     H3C                  CH3   i
                                                        a
      H          H                 H          H         s
                                                        t
                      entaiomers                        e
                                                        r
              Cl Br                Br Cl                o
                                                        m
                                                        e
                                                        r
 H3C                  H      H                CH3       s

          H          CH3     H3C          H

                      entaiomers
                                                        34
Enantiomers & Diastereomers
  For a molecule with 1 stereocenter, 2
  stereoisomers are possible
  For a molecule with 2 stereocenters, a
  maximum of 4 stereoisomers are possible
  For a molecule with n stereocenters, a
  maximum of 2n stereoisomers are possible
  2n-1 pairs of enantiomers



                                             35
Enantiomers & Diastereomers
  2,3,4-Trihydroxybutanal
      two chiral centers
       22 = 4 stereoisomers exist; two pairs of
      enantiomers
       CHO             CHO             CHO             CHO
  H    C   OH HO       C    H   H      C   OH HO       C   H

  H    C   OH HO       C    H   HO     C   H      H    C   OH

       CH2 OH          CH2 OH          CH2 OH          CH2 OH
      A pai r of enanti omers        A pai r of enanti omers
            (Eryt hreose)                    (Threose)

  Diastereomers:
      stereoisomers that are not mirror images
      refers to the relationship among two or more
      objects                                                   36
Enantiomers & Diastereomers
  2,3-Dihydroxybutanedioic acid (tartaric acid)
       two chiral centers; 2n = 4, but only three
       stereoisomers exist

         COOH           COOH            COOH           COOH

   H     C    OH HO     C     H   H     C    OH HO     C       H

   H     C    OH HO     C     H   HO    C    H     H   C       OH

         COOH           COOH            COOH           COOH
         A meso compound               A pair of enantiomers
        (plane of symmetry)
  Meso compound: an achiral compound
  possessing two or more chiral centers that
  also has chiral isomers
                                                               37
Enantiomers & Diastereomers
 2-Methylcyclopentanol

       CH3 OH            HO H3 C

       H       H             H    H
       ci s- 2-Methyl cycl opentanol
        (a pai r of enanti omers)      di astereomers

       CH3 H                H H3 C

       H       OH           HO     H
      trans- 2-Methyl cycl opentanol
         (a pai r of enanti omers)




                                                        38
Enantiomers & Diastereomers
  1,2-Cyclopentanediol

        OH HO                OH HO

        H         H           H     H
            cis- 1,2-Cyclopentanediol
              (a meso compound)
                                        diastereomers

        OH      H           H    HO

        H HO                OH H
         trans- 1,2-Cyclopentanediol
           (a pair of enantiomers)




                                                        39
Enantiomers & Diastereomers
   cis-3-Methylcyclohexanol

  H3 C            OH HO       CH 3




                                     40
Enantiomers & Diastereomers
  trans-3-Methylcyclohexanol


     H3 C                      CH 3

                OH   HO




                                      41
Meso compounds

Meso compounds are achiral by virtue of a
symmetry plane, but contain a stereogenic
center.

         plane of symmmetry                      mirror

             Cl Cl                       Cl Cl

   H3C                   CH3   H3C                 CH3
         H           H               H       H

                                                          42
Meso compounds
Meso compound: achiral despite the
presence of stereogenic centers
  Not optically active
  Superposable on its mirror image
  Has a plane of symmetry




                                     43
The Three Stereoisomers of
              2,3-dibromobutane




• Because one stereoisomer of 2,3-dibromobutane is
  superimposable on its mirror image, there are only three
  stereoisomers, not four.
                                                      44
NUMBER OF
STEREOISOMERS POSSIBLE
How Many Stereoisomers
          Are Possible?

    maximum number of stereoisomers
sometimes fewer = 2n,
than this number
will exist

    where n = number of stereocenters
          (sterogenic carbons)
CH2OH            OH                RR
                                         RS
CH3         *
      C CH2 CH CH CH3                    SR
                       *                 SS
      CH3        CH3
                           22 = 4 stereoisomers
        CH3
                                 RRR    RSS
        *                        RRS    SRS
                                 RSR    SSR
            *
        *        OH              SRR    SSS

  CH3   CH                  23 = 8 stereoisomers
                CH3
CONFIGURATION

ABSOLUTE CONFIGURATION ( R / S )
CONFIGURATION

The three dimensional arrangement of the
groups attached to an atom



Stereoisomers differ in the configuration at one or
more of their atoms.
CONFIGURATION
               → R,S convention


               1                  2
clockwise                 2                    1       counter
                                                       clockwise
                   C                  C
               4                  4
                   3                  3
 view with
 substituent
 of lowest
 priority in
 back
                   R   (rectus)       S   (sinister)
Rules for Labeling Stereogenic Centers with R or S

• Since enantiomers are two different compounds, they
  need to be distinguished by name. This is done by
  adding the prefix R or S to the IUPAC name of the
  enantiomer.
• Naming enantiomers with the prefixes R or S is called
  the Cahn-Ingold-Prelog system.
• To designate enantiomers as R or S, priorities must be
  assigned to each group bonded to the stereogenic
  center, in order of decreasing atomic number. The atom
  of highest atomic number gets the highest priority (1).




                                                      51
Priority Rules for Naming Enantiomers (R or S)

• If two atoms on a stereogenic center are the same,
  assign priority based on the atomic number of the atoms
  bonded to these atoms. One atom of higher priority
  determines the higher priority.




                                                    52
Priority of Isotopes on a Stereogenic Center
• If two isotopes are bonded to the stereogenic center,
  assign priorities in order of decreasing mass number.
  Thus, in comparing the three isotopes of hydrogen, the
  order of priorities is:




                                                     53
Priority Rules for Multiple Bonds in (R or S) Labeling
• To assign a priority to an atom that is part of a multiple bond,
  treat a multiply bonded atom as an equivalent number of
  singly bonded atoms. For example, the C of a C=O is
  considered to be bonded to two O atoms.




• Other common multiple bonds are drawn below:




                                                             54
Examples Assigning Priorities




                                55
Cahn-Ingold-Prelog System for
 Naming Enantiomers R or S



                          56
R or S Enantiomers




                     57
Positioning the Molecule for R/S Assignment




                                          58
R-enantiomer (Clockwise Rotation)
S-enantiomer (Counterclockwise Rotation)




                                     59
Manipulation of Chiral Molecules




                                   60
The molecule is rotated to put the lowest
priority group back
  If the groups descend in priority (a,b then c) in
  clockwise direction the enantiomer is R
  If the groups descend in priority in
  counterclockwise direction the enantiomer is S




                                                  61
R,S Convention
Priority rules (Cahn, Ingold, Prelog)
     Each atom bonded to the stereocenter is
     assigned a priority, based on atomic
     number. The higher the atomic number,
     the higher the priority
 1      6      7         8       16   17   35        53
H       CH3    NH2      OH      SH    Cl   Br        I

                Increasing Priority

                                                62
R,S Convention
 If priority cannot be assigned on the basis
 of the atoms bonded to the stereocenter,
 look to the next set of atoms. Priority is
 assigned at the first point of difference.

      1         6            7              8
CH2   H     CH2 CH3          CH2 NH2    CH2 OH


             Increasing Priority

                                               63
R,S Convention
 Atoms participating in a double or triple
bond are considered to be bonded to an
equivalent number of similar atoms by
single bonds
                                  C    C
                 i s treated as
       -CH=CH2                    -CH-CH2

           O                      O C
                 i s treated as
           -CH                    C    O
                                  H
                                      C C
                 i s treated as
         C CH                         C C H
                                      C C



                                              64
Priorities
1. -OH                  H
                  HO        COOH
2. -COOH                C
3. -CH3                 CH3

4. -H            (R)-(-)-lactic acid


                            H
                 HOOC           OH
                            C
                            CH3

                  (S)-(+)-lactic acid   65
Bromochlorofluoroiodomethane
                 1                             1
                 I                         I
4                             4
    F        C                             C
                          2       F
        Cl           Br               Br           Cl
             3                                 3
                                      2

             R                             S
                      Enantiomers                       66
R and S Assignments in Compounds
with Two or More Stereogenic Centers.
• When a compound has more than one stereogenic
  center, the R and S configuration must be assigned to
  each of them.




                    One stereoisomer of 2,3-dibromopentane
                The complete name is (2S,3R)-2,3-dibromopentane




                                                                  67
Stereoisomerism of Cyclic Compounds
 1,4-dimethylcyclohexane
   Neither the cis not trans isomers is optically active
   Each has a plane of symmetry




                                                      68
1,3-dimethylcyclohexane
  The trans and cis compounds each have two
  stereogenic centers
  The cis compound has a plane of symmetry
  and is meso
  The trans compound exists as a pair of
  enantiomers




                                              69
Properties of Stereoisomers



                          70
Properties of Stereoisomers
 Enantiomers have identical physical and
 chemical properties in achiral
 environments
 Diastereomers are different compounds
 and have different physical and
 chemical properties
   meso tartaric acid, for example, has
   different physical and chemical properties
   from its enantiomers (see Table 3.1)

                                                71
Plane-Polarized Light

Ordinary light: light vibrating in all
planes perpendicular to its direction of
propagation
Plane-polarized light: light vibrating only
in parallel planes
Optically active: refers to a compound
that rotates the plane of plane-polarized
light

                                         72
Plane-Polarized Light
plane-polarized light is the vector sum of
left and right circularly polarized light
circularly polarized light reacts one way
with an R chiral center, and the opposite
way with its enantiomer
the result of interaction of plane-polarized
light with a chiral compound is rotation of
the plane of polarization




                                               73
Plane-Polarized Light

Polarimeter: a device for measuring the
extent of rotation of plane-polarized
light




                                      74
Optical Activity
observed rotation: the number of degrees, α, through
which a compound rotates the plane of polarized
light
dextrorotatory (+): refers to a compound that
rotates the plane of polarized light to the right
levorotatory (-): refers to a compound that rotates of
the plane of polarized light to the left
specific rotation: observed rotation when a pure
sample is placed in a tube 1.0 dm in length and
concentration in g/mL (density); for a solution,
concentration is expressed in g/ 100 mL
                     COOH                  COOH
                     C H              H C
            H3 C     OH                       CH3
                                     HO
         (S)-(+)-Lacti c aci d   (R)-(-)-L actati c aci d
                21                        21
            [ α] D = +2.6°            [ α] D = -2.6°

                                                            75
Optical Purity
Optical purity: a way of describing the
composition of a mixture of enantiomers

                                   [α ]sam p l e
Percent opti cal puri ty =                               x 100
                             [α ]p u re en an ti o mer
Enantiomeric excess: the difference between
the percentage of two enantiomers in a
mixture
                                [R] - [S]
  Enan ti omeri c excess (ee) =           x 100 = %R - %S
                                [R] + [S]

   optical purity is numerically equal to enantiomeric
   excess, but is experimentally determined

                                                                 76
Resolution

Racemic mixture: an equimolar mixture
of two enantiomers
  because a racemic mixture contains equal
  numbers of dextrorotatory and levorotatory
  molecules, its specific rotation is zero
Resolution: the separation of a racemic
mixture into its enantiomers


                                          77
Racemates
• An equal amount of two enantiomers is called a
  racemate or a racemic mixture. A racemic mixture is
  optically inactive. Because two enantiomers rotate
  plane-polarized light to an equal extent but in opposite
  directions, the rotations cancel, and no rotation is
  observed.




                                                        78
Specific Rotation
• Specific rotation is a standardized physical constant for
  the amount that a chiral compound rotates plane-
  polarized light. Specific rotation is denoted by the
  symbol [α] and defined using a specific sample tube
  length (l, in dm), concentration (c in g/mL), temperature
  (25 0C) and wavelength (589 nm).




                                                       79
Discovery of Enantiomers

“There is no doubt
  that in dextro              -     +
  tartaric acid there
                           COO Na
  exists an             H C OH
  assymetric
  arrangement           HO C H
  having a
  nonsuperimposible           -     +
                           COO Na
  image.”

                                    80
Tartaric Acid
           OH OH                 OH OH
HOOC            H             H             COOH
       H       COOH         HOOC        H

 (+)-tartaric acid           (-)-tartaric acid



           OH OH     meso          ALSO FOUND
                              (as a minor component)
HOOC               COOH
       H       H                    [α]D = 0
                                 more about this
   meso -tartaric acid           compound later
                                                       81
Diastereoisomer
Stereoisomers
that are not
mirror images of   H
                     COOH
                       NH2
                                     COOH
each other.          C          H 2N C H

Different              C              C
                   H       OH     H     OH
configuration at       CH3            CH3
some locations.


                                          82
Diastereomers
        Threonine: 2 pairs       H
                                   COOH
                                     NH2            COOH
                                               H 2N   H
        of enantiomers             C                C
                                     C               C
                                 H       OH    HO     H
                                     CH3        H 3C
2R,3R    2S,3S   2R,3S & 2S,3R    2R, 3R        2S, 3S
2S,3S    2R,3R   2R,3S & 2S,3R         COOH         COOH
2R,3S    2S,3R   2R,3R & 2S,3S       H C NH2   H 2N C H
2S,3R    2R,3S   2R,3R & 2S,3S           C           C
                                 HO    H         H     OH
                                  H 3C               CH3

                                 2R, 3S         2S, 3R


                                                            83
Enantiomers & Diastereomers
For tartaric acid, the three possible
stereoisomers are one meso compound
and a pair of enantiomers.

Meso compound: an achiral compound
possessing two or more stereocenters.



                                    84
Symmetry Plane
2R, 3S and 2S, 3R        COOH         COOH
                                   HO   H
are identical          H C OH         C

Molecule has a plane
                            C           C
                       HO    H     H       OH
                          COOH
of symmetry
                                        COOH
                        2R, 3R          2S, 3S
perpendicular to C-C     COOH         COOH
and is therefore       H C OH      HO
                                      C
                                        H

achira                      C           C
                       H      OH   HO     H
                            COOH        COOH

                        2R, 3S          2S, 3R


                                                 85
Symmetry Plane
2R, 3S and 2S, 3R        COOH         COOH
are identical          H C OH      HO
                                      C
                                        H

Molecule has a plane   HO
                            C
                             H      H
                                        C
                                           OH
of symmetry               COOH          COOH
perpendicular to C-C    2R, 3R          2S, 3S

and is therefore         COOH
                                        Mirror
                                      COOH
achira                 H C OH      HO   H
                                      image is
                                      C
One meso               H
                            C
                              OH   HO
                                      identical
                                      C
                                        H
compound and a              COOH      COOH
pair of enantiomers     2R, 3S          2S, 3R


                                                 86
2-Bromo-3-chlorobutane
                                  mirror
                    Cl Br                            Br Cl
                S       R                        S           R
        CH3                 CH3            CH3                   CH3
                H       H                        H       H
                            enantiomers 1
diastereomers
                    Cl Br                            Br Cl
                S       S                        R           R
         CH3             H                   H                   CH3
                H       CH3                 CH3              H
                            enantiomers 2

                                                                       87
2,3-Dichlorobutane
                     Cl Cl                      Cl Cl
                 S       R               mirror image
          CH3                CH3      CH3 is identical CH3
                 H       H                  H        H
                              meso
diastereomers
                     Cl Cl                       Cl Cl
                 S       S                   R          R
           CH3            H                 H               CH3
                 H       CH3               CH3          H
                             enantiomers


                                                                  88
Tartaric Acid
(-) - tartaric acid           (+) - tartaric acid
  [α]D = -12.0o                 [α]D = +12.0o
  mp 168 - 170o                  mp 168 - 170o
 solubility of 1 g              solubility of 1 g
     0.75 mL H2O                    0.75 mL H2O
  1.7 mL methanol                1.7 mL methanol
    250 mL ether                   250 mL ether
 insoluble CHCl3                insoluble CHCl3
 d = 1.758 g/mL                 d = 1.758 g/mL

               meso - tartaric acid
          [α ]D = 0 o      solubility of 1 g
          mp 140o             0.94 mL H2O
          d = 1.666 g/mL   insoluble CHCl3
                                                    89
Fischer Projections



                  90
CH 3

                                          H          OH


Fischer Projections                           CH 2 CH 3



Fischer projection: a two-dimensional
representation showing the
configuration of a stereocenter
  horizontal lines represent bonds projecting
  forward
  vertical lines represent bonds projecting to
  the rear
  the only atom in the plane of the paper is
  the stereocenter

                                              91
Fischer Projections


  COOH                COOH
  C    H     OH
H
OH CH3   CH3
                       How?
    (R)-lactic acid
                              92
Fischer Projections


  COOH          COOH

H C    H               OH
OH CH3          CH3

                       93
Fischer Projections


    COOH           COOH
H         OH H            OH
    CH3            CH3
                          94
Fischer Projections

  1. Orient the stereocenter so that bonds
     projecting away from you are vertical and
     bonds projecting toward you are horizontal
  2. Flatten it to two dimensions
           OH                      CH3                   CH 3

           C             (1)   H   C     OH (2)     H           OH
     H
                  CH 3
CH3 CH 2
                                   CH 2 CH 3             CH 2 CH 3
  (S)-2-Butanol                                   (S)-2-Butanol
  (3-D formula)                                (Fischer projection)
                                                                 95
Assigning R,S Configuration
Lowest priority group goes to the top.
View rest of projection.
A curved arrow from highest to lowest
priority groups.
Clockwise - R (rectus)
Counterclockwise - S (sinister)


                                         96
Assigning R,S Configuration
            4

            H
                 2

 3   H 3C        COOH
            OH
            1        s-lactic acid
                               97
Rules of Motion
 Can rotate 180°, but not 90° because
 90° disobeys the Fischer projection.
    Same groups go in and out of plane


  COOH        COOH                            CH3
                                CH3
H   OH               180                   HO   H
         =H     OH         HO     H    =
 CH3          CH3               COOH          COOH


                                                98
Rules of Motion
  Can rotate 180°, but not 90° because
  90° disobeys the Fischer projection.
        Different groups go in and out of plane
        This generates an enantiomeric structure
  COOH         COOH                                         H
                                     H
H   OH                   90                        H 3C         COOH
         =H         OH        H 3C        COOH =
 CH3           CH3                   OH                     OH

  (R)-lactic acid                         (S)-lactic acid

                                                                 99
Rules of Motion
ď‚Ť One group can be held steady and the
 others rotated.


      COOH                      COOH
  H      OH      same as   HO       CH3
      CH3                       H


                                       100
Rules of Motion
  To determine if two Fischer projections
  represent the same enantiomer carry
  out allowed motions.
       H                  C 2H 5       OH
H 3C        C 2H 5   HO       H    H        CH3
       OH                 CH3          C 2H 5


       A                  B             C
                                                101
H                    C 2H 5         OH
                                  H 3C        C 2H 5    HO        H    H          CH3
                                         OH                   CH3            C 2H 5



               Rules of Motion           A                   B                C



     By performing two allowed movements
     on B, we are able to generate
     projection A. Therefore, they are
     identical.
     CH2CH3             HO                                   H
              CH3                     CH3CH2
HO       H          H        CH2CH3                    CH3        CH2CH3
     CH3                 CH3                                 HO


     B                                                       A


                                                                       102
H                   C 2H 5       OH
                                      H 3C        C 2H 5   HO        H    H        CH3
                                             OH                  CH3          C 2H 5



                  Rules of Motion            A                  B              C



      Perform one of the two allowed motions
      to place the group with lowest priority
      at the top of the Fischer projection.


    OH                       CH2CH3                                 H
H        CH 3   180               H          OH            CH3
                      H 3C                                                CH2CH
                                             90
    CH2CH3                   OH                                      OH

                                                                        103
     C                                                              not A
Priorities
                   HOOC
 1. NH2                             CH3
                                                  H

 2. COOH          H 2N     H              HOOC          NH2
                         CH3                     CH3
 3. CH3
 4. H
        H                       H          HOOC
HOOC        NH2          HOOC       NH2
        CH3                     CH3       H 2N          H
                                                 CH3
        S - stereochemistry                       104
1-Bromo-2-chlorocyclohexane
                Br   Cl                 Cl   Br    cis


                          enantiomers
diastereomers


                Br                           Br    trans

                     Cl                 Cl
                          enantiomers
                                                  105
1-Bromo-2-chlorocyclopropane

       Br R         Cl     Cl R           Br
                S                     S
                                               cis


                    enantiomers
diastereomers
         Br R                             Br
                R                 S   S
                                               trans
                    Cl      Cl

                    enantiomers
                                                 106
1,2-Dibromocyclopropane
                         mirror image identical

        Br        Br     Br              Br
                                                  cis


                meso
diastereomers

        Br                               Br
                                                  trans
                  Br      Br

                  enantiomers                     107
Biological Significance of Stereoisomers


          Structure            causes             Properties

       Stereochemistry                        Biological effects

Example
•Pasteur’s plant mold metabolized (+)-tartaric acid but not (-)-tartaric acid




                                                                     108
Biological Significance of Stereoisomers
                           Thalidomide
                                                 O
•Marketed in 50 countries 1956-1962
   Sedative for “hysterical” pregnant women
                                                     N                 O
   Antiemetic to combat morning sickness
                                                             N
•Caused thousands of birth defects
                                                 O       O       H

         Teratogen: causes fetal abnormalities
                                                  One stereocenter

   •Sold as racemic mixture: 1:1 mixture of enantiomers
          R enantiomer = antiemetic (not teratogenic)
          S enantiomer = teratogenic (not antiemetic)
   •Single-enantiomer drug not useful: quickly racemizes in body


                                                                 109
Biological Significance of Stereoisomers
     Another Biological Effect: Odor
                     O                                   O
                              enantiomers


            H                                    H


        (R)-(-)-carvone                      (S)-(+)-carvone
      smells like spearmint                 smells like caraway




 Mirror image molecules do not have “mirror image effects”
                                                                  110
Biological Significance of Stereoisomers
                 Of Hands, Gloves, and Biology
Why do stereoisomers have different biological properties?
•Many biological effects involve interaction with a cavity in enzyme or receptor
•Good fit to cavity (i.e., strong binding) triggers enzyme or receptor
                                                                            R         H

                                                                                              OH
     •Enzymes and receptors are proteins; built from amino acids:     H2N

                                                                                          O
  •Most amino acids are chiral, so protein cavity is also chiral
  •Metaphor: Stereoisomer = left hand or right hand
             Protein hole = left glove or right glove
             Left hand fits left glove but not right glove
             Left hand triggers “left protein” but not “right protein”
  •(R)-carvone triggers spearmint smell receptor but not caraway smell receptor




                                                                                111
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  • 2. Isomers Isomers: different compounds with the same molecular formula Constitutional isomers: isomers with a different connectivity Stereoisomers: isomers with the same molecular formula, the same connectivity but a different orientation of their atoms in space that cannot be interconverted by rotation about a single bond 2
  • 3. Isomerism → Constitutional Isomers and Stereoisomers Stereoisomers are isomers with the same molecular formula and same connectivity of atoms but different arrangement of atoms in space 3
  • 4. Stereochemistry is the chemistry of molecules in three dimension 4
  • 5. Handedness Stereochemistry of organic molecules can be understood, if we understand the meaning of handedness the fundamental reason for this is that our hands are not identical, rather they are mirror images 5
  • 6. Chirality The mirror image Objects which are chiral have a of a chiral object is sense of “handedness” and different and will not exist in two forms. superimpose on the original object. 6
  • 7. The reason for Handedness→ chirality • Although everything has a mirror image, mirror images may or may not be superimposable. • Some molecules are like hands. Left and right hands are mirror images, but they are not identical, or superimposable → chiral (property of handedness) 7
  • 9. Chirality and Nonchirality Mirror image: the reflection of an object in a mirror Objects that are not superposable on their mirror images are said to be chiral, that is, they show handedness Objects that are superposable on their mirror images are said to be achiral, that is, they do not show handedness. An achiral object has at least one element of symmetry 9
  • 10. Achiral Molecules • Do these molecules contain a Plane of Symmetry (Mirror Plane)? 10
  • 11. Chiral Molecules • The molecule labeled A and its mirror image labeled B are not superimposable. No matter how you rotate A and B, all the atoms never align. Thus, CHBrClF is a chiral molecule, and A and B are different compounds. • A and B are stereoisomers—specifically, they are enantiomers. • A carbon atom with four different groups is a tetrahedral stereogenic center. 11
  • 12. Chiral vs. Achiral • With one stereogenic center, a molecule will always be chiral. • With two or more stereogenic centers, a molecule may or may not be chiral, e.g. Meso compound (contains a plane of symmetry or a mirror plane) 12
  • 13. Chiral vs. Achiral Chiral: from the Greek, cheir, hand an object that is not superposable on its mirror image Achiral: an object that lacks chirality; one that lacks handedness an achiral object has at least one element of symmetry plane of symmetry: an imaginary plane passing through an object dividing it so that one half is the mirror image of the other half center of symmetry: a point so situated that identical components are located on opposite sides and equidistant from that point along the axis passing through it 13
  • 15. Plane of Symmetry or Mirror plane 15
  • 16. TWO VIEWS OF THE PLANE OF SYMMETRY plane of symmetry F F Cl Cl Br Cl Br Cl F side edge Cl Br view view
  • 17. Plane of Symmetry Symmetry plane No symmetry plane COOH CH3 H C H H C OH COOH COOH achiral chiral 17
  • 18. Elements of Symmetry Center of symmetry: a point so situated that identical components of the object are located equidistant on opposite sides and equidistant from the point along any axis passing through the point Br H Cl Cl H center of Br symmetry 18
  • 19. Chiral Center The most common (but not the only) cause of chirality in organic molecules is a tetrahedral atom, most commonly carbon, bonded to four different groups A carbon with four different groups bonded to it is called a chiral center all chiral centers are stereocenters, but not all stereocenters are chiral centers. 19
  • 21. Stereogenic Carbon Atoms Cl This is one type of …. stereocenter …. others are possible H F Br A stereogenic carbon is tetrahedral and has four different groups attached. 21
  • 22. Stereogenic Centers • To locate a stereogenic center, examine the four groups—not the four atoms—bonded to each tetrahedral carbon atom in a molecule. • Omit from consideration all C atoms that cannot be tetrahedral stereogenic centers. These include • Methylene and methyl units, i. e. CH2 and CH3 groups respectively. • Any sp or sp2 hybridized Carbons, e.g. triple bonds, and double bonds in alkenes (C=C) and carbonyls (C=O). 22
  • 24. Enantiomers One of a pair of molecular species that are mirror images of each other and not superposable. They are mirror-image stereoisomers. 24
  • 25. Drawing Enantiomers • To draw both enantiomers of a chiral compound such as 2-butanol, use the typical convention for depicting a tetrahedron: place two bonds in the plane, one in front of the plane on a wedge, and one behind the plane on a dash. Then, to form the first enantiomer, arbitrarily place the four groups—H, OH, CH3 and CH2CH3—on any bond to the stereogenic center. Then draw the mirror image. 25
  • 27. Enantiomers Cl Cl rotate H F F Br Br H this molecule Cl is chiral note that the fluorine and bromine have been interchanged in the H Br enantiomer F 27
  • 28. Enantiomers HO O O OH Lactic acid C C C C HO H H OH CH 3 H3 C 28
  • 30. Enantiomers OH CH 3 CHCH 2 OH 1,2-propanediol OH OH H3 C C CH 2 OH HOH 2 C C CH 3 H H 30
  • 31. Enantiomers A nitrogen chiral center + + N N H3 C CH2 CH3 CH3 CH2 CH3 A pai r of enanti omers 31
  • 33. Enantiomers & Diastereoisomer Enantiomers: opposite configurations at all stereogenic centers. Diastereomers: Stereoisomers that are not mirror images of each other. Different configuration at some locations. 33
  • 34. Two Stereocenters Cl Br Br Cl d H3C CH3 H3C CH3 i a H H H H s t entaiomers e r Cl Br Br Cl o m e r H3C H H CH3 s H CH3 H3C H entaiomers 34
  • 35. Enantiomers & Diastereomers For a molecule with 1 stereocenter, 2 stereoisomers are possible For a molecule with 2 stereocenters, a maximum of 4 stereoisomers are possible For a molecule with n stereocenters, a maximum of 2n stereoisomers are possible 2n-1 pairs of enantiomers 35
  • 36. Enantiomers & Diastereomers 2,3,4-Trihydroxybutanal two chiral centers 22 = 4 stereoisomers exist; two pairs of enantiomers CHO CHO CHO CHO H C OH HO C H H C OH HO C H H C OH HO C H HO C H H C OH CH2 OH CH2 OH CH2 OH CH2 OH A pai r of enanti omers A pai r of enanti omers (Eryt hreose) (Threose) Diastereomers: stereoisomers that are not mirror images refers to the relationship among two or more objects 36
  • 37. Enantiomers & Diastereomers 2,3-Dihydroxybutanedioic acid (tartaric acid) two chiral centers; 2n = 4, but only three stereoisomers exist COOH COOH COOH COOH H C OH HO C H H C OH HO C H H C OH HO C H HO C H H C OH COOH COOH COOH COOH A meso compound A pair of enantiomers (plane of symmetry) Meso compound: an achiral compound possessing two or more chiral centers that also has chiral isomers 37
  • 38. Enantiomers & Diastereomers 2-Methylcyclopentanol CH3 OH HO H3 C H H H H ci s- 2-Methyl cycl opentanol (a pai r of enanti omers) di astereomers CH3 H H H3 C H OH HO H trans- 2-Methyl cycl opentanol (a pai r of enanti omers) 38
  • 39. Enantiomers & Diastereomers 1,2-Cyclopentanediol OH HO OH HO H H H H cis- 1,2-Cyclopentanediol (a meso compound) diastereomers OH H H HO H HO OH H trans- 1,2-Cyclopentanediol (a pair of enantiomers) 39
  • 40. Enantiomers & Diastereomers cis-3-Methylcyclohexanol H3 C OH HO CH 3 40
  • 41. Enantiomers & Diastereomers trans-3-Methylcyclohexanol H3 C CH 3 OH HO 41
  • 42. Meso compounds Meso compounds are achiral by virtue of a symmetry plane, but contain a stereogenic center. plane of symmmetry mirror Cl Cl Cl Cl H3C CH3 H3C CH3 H H H H 42
  • 43. Meso compounds Meso compound: achiral despite the presence of stereogenic centers Not optically active Superposable on its mirror image Has a plane of symmetry 43
  • 44. The Three Stereoisomers of 2,3-dibromobutane • Because one stereoisomer of 2,3-dibromobutane is superimposable on its mirror image, there are only three stereoisomers, not four. 44
  • 46. How Many Stereoisomers Are Possible? maximum number of stereoisomers sometimes fewer = 2n, than this number will exist where n = number of stereocenters (sterogenic carbons)
  • 47. CH2OH OH RR RS CH3 * C CH2 CH CH CH3 SR * SS CH3 CH3 22 = 4 stereoisomers CH3 RRR RSS * RRS SRS RSR SSR * * OH SRR SSS CH3 CH 23 = 8 stereoisomers CH3
  • 49. CONFIGURATION The three dimensional arrangement of the groups attached to an atom Stereoisomers differ in the configuration at one or more of their atoms.
  • 50. CONFIGURATION → R,S convention 1 2 clockwise 2 1 counter clockwise C C 4 4 3 3 view with substituent of lowest priority in back R (rectus) S (sinister)
  • 51. Rules for Labeling Stereogenic Centers with R or S • Since enantiomers are two different compounds, they need to be distinguished by name. This is done by adding the prefix R or S to the IUPAC name of the enantiomer. • Naming enantiomers with the prefixes R or S is called the Cahn-Ingold-Prelog system. • To designate enantiomers as R or S, priorities must be assigned to each group bonded to the stereogenic center, in order of decreasing atomic number. The atom of highest atomic number gets the highest priority (1). 51
  • 52. Priority Rules for Naming Enantiomers (R or S) • If two atoms on a stereogenic center are the same, assign priority based on the atomic number of the atoms bonded to these atoms. One atom of higher priority determines the higher priority. 52
  • 53. Priority of Isotopes on a Stereogenic Center • If two isotopes are bonded to the stereogenic center, assign priorities in order of decreasing mass number. Thus, in comparing the three isotopes of hydrogen, the order of priorities is: 53
  • 54. Priority Rules for Multiple Bonds in (R or S) Labeling • To assign a priority to an atom that is part of a multiple bond, treat a multiply bonded atom as an equivalent number of singly bonded atoms. For example, the C of a C=O is considered to be bonded to two O atoms. • Other common multiple bonds are drawn below: 54
  • 56. Cahn-Ingold-Prelog System for Naming Enantiomers R or S 56
  • 57. R or S Enantiomers 57
  • 58. Positioning the Molecule for R/S Assignment 58
  • 59. R-enantiomer (Clockwise Rotation) S-enantiomer (Counterclockwise Rotation) 59
  • 60. Manipulation of Chiral Molecules 60
  • 61. The molecule is rotated to put the lowest priority group back If the groups descend in priority (a,b then c) in clockwise direction the enantiomer is R If the groups descend in priority in counterclockwise direction the enantiomer is S 61
  • 62. R,S Convention Priority rules (Cahn, Ingold, Prelog) Each atom bonded to the stereocenter is assigned a priority, based on atomic number. The higher the atomic number, the higher the priority 1 6 7 8 16 17 35 53 H CH3 NH2 OH SH Cl Br I Increasing Priority 62
  • 63. R,S Convention If priority cannot be assigned on the basis of the atoms bonded to the stereocenter, look to the next set of atoms. Priority is assigned at the first point of difference. 1 6 7 8 CH2 H CH2 CH3 CH2 NH2 CH2 OH Increasing Priority 63
  • 64. R,S Convention Atoms participating in a double or triple bond are considered to be bonded to an equivalent number of similar atoms by single bonds C C i s treated as -CH=CH2 -CH-CH2 O O C i s treated as -CH C O H C C i s treated as C CH C C H C C 64
  • 65. Priorities 1. -OH H HO COOH 2. -COOH C 3. -CH3 CH3 4. -H (R)-(-)-lactic acid H HOOC OH C CH3 (S)-(+)-lactic acid 65
  • 66. Bromochlorofluoroiodomethane 1 1 I I 4 4 F C C 2 F Cl Br Br Cl 3 3 2 R S Enantiomers 66
  • 67. R and S Assignments in Compounds with Two or More Stereogenic Centers. • When a compound has more than one stereogenic center, the R and S configuration must be assigned to each of them. One stereoisomer of 2,3-dibromopentane The complete name is (2S,3R)-2,3-dibromopentane 67
  • 68. Stereoisomerism of Cyclic Compounds 1,4-dimethylcyclohexane Neither the cis not trans isomers is optically active Each has a plane of symmetry 68
  • 69. 1,3-dimethylcyclohexane The trans and cis compounds each have two stereogenic centers The cis compound has a plane of symmetry and is meso The trans compound exists as a pair of enantiomers 69
  • 71. Properties of Stereoisomers Enantiomers have identical physical and chemical properties in achiral environments Diastereomers are different compounds and have different physical and chemical properties meso tartaric acid, for example, has different physical and chemical properties from its enantiomers (see Table 3.1) 71
  • 72. Plane-Polarized Light Ordinary light: light vibrating in all planes perpendicular to its direction of propagation Plane-polarized light: light vibrating only in parallel planes Optically active: refers to a compound that rotates the plane of plane-polarized light 72
  • 73. Plane-Polarized Light plane-polarized light is the vector sum of left and right circularly polarized light circularly polarized light reacts one way with an R chiral center, and the opposite way with its enantiomer the result of interaction of plane-polarized light with a chiral compound is rotation of the plane of polarization 73
  • 74. Plane-Polarized Light Polarimeter: a device for measuring the extent of rotation of plane-polarized light 74
  • 75. Optical Activity observed rotation: the number of degrees, α, through which a compound rotates the plane of polarized light dextrorotatory (+): refers to a compound that rotates the plane of polarized light to the right levorotatory (-): refers to a compound that rotates of the plane of polarized light to the left specific rotation: observed rotation when a pure sample is placed in a tube 1.0 dm in length and concentration in g/mL (density); for a solution, concentration is expressed in g/ 100 mL COOH COOH C H H C H3 C OH CH3 HO (S)-(+)-Lacti c aci d (R)-(-)-L actati c aci d 21 21 [ α] D = +2.6° [ α] D = -2.6° 75
  • 76. Optical Purity Optical purity: a way of describing the composition of a mixture of enantiomers [α ]sam p l e Percent opti cal puri ty = x 100 [α ]p u re en an ti o mer Enantiomeric excess: the difference between the percentage of two enantiomers in a mixture [R] - [S] Enan ti omeri c excess (ee) = x 100 = %R - %S [R] + [S] optical purity is numerically equal to enantiomeric excess, but is experimentally determined 76
  • 77. Resolution Racemic mixture: an equimolar mixture of two enantiomers because a racemic mixture contains equal numbers of dextrorotatory and levorotatory molecules, its specific rotation is zero Resolution: the separation of a racemic mixture into its enantiomers 77
  • 78. Racemates • An equal amount of two enantiomers is called a racemate or a racemic mixture. A racemic mixture is optically inactive. Because two enantiomers rotate plane-polarized light to an equal extent but in opposite directions, the rotations cancel, and no rotation is observed. 78
  • 79. Specific Rotation • Specific rotation is a standardized physical constant for the amount that a chiral compound rotates plane- polarized light. Specific rotation is denoted by the symbol [α] and defined using a specific sample tube length (l, in dm), concentration (c in g/mL), temperature (25 0C) and wavelength (589 nm). 79
  • 80. Discovery of Enantiomers “There is no doubt that in dextro - + tartaric acid there COO Na exists an H C OH assymetric arrangement HO C H having a nonsuperimposible - + COO Na image.” 80
  • 81. Tartaric Acid OH OH OH OH HOOC H H COOH H COOH HOOC H (+)-tartaric acid (-)-tartaric acid OH OH meso ALSO FOUND (as a minor component) HOOC COOH H H [α]D = 0 more about this meso -tartaric acid compound later 81
  • 82. Diastereoisomer Stereoisomers that are not mirror images of H COOH NH2 COOH each other. C H 2N C H Different C C H OH H OH configuration at CH3 CH3 some locations. 82
  • 83. Diastereomers Threonine: 2 pairs H COOH NH2 COOH H 2N H of enantiomers C C C C H OH HO H CH3 H 3C 2R,3R 2S,3S 2R,3S & 2S,3R 2R, 3R 2S, 3S 2S,3S 2R,3R 2R,3S & 2S,3R COOH COOH 2R,3S 2S,3R 2R,3R & 2S,3S H C NH2 H 2N C H 2S,3R 2R,3S 2R,3R & 2S,3S C C HO H H OH H 3C CH3 2R, 3S 2S, 3R 83
  • 84. Enantiomers & Diastereomers For tartaric acid, the three possible stereoisomers are one meso compound and a pair of enantiomers. Meso compound: an achiral compound possessing two or more stereocenters. 84
  • 85. Symmetry Plane 2R, 3S and 2S, 3R COOH COOH HO H are identical H C OH C Molecule has a plane C C HO H H OH COOH of symmetry COOH 2R, 3R 2S, 3S perpendicular to C-C COOH COOH and is therefore H C OH HO C H achira C C H OH HO H COOH COOH 2R, 3S 2S, 3R 85
  • 86. Symmetry Plane 2R, 3S and 2S, 3R COOH COOH are identical H C OH HO C H Molecule has a plane HO C H H C OH of symmetry COOH COOH perpendicular to C-C 2R, 3R 2S, 3S and is therefore COOH Mirror COOH achira H C OH HO H image is C One meso H C OH HO identical C H compound and a COOH COOH pair of enantiomers 2R, 3S 2S, 3R 86
  • 87. 2-Bromo-3-chlorobutane mirror Cl Br Br Cl S R S R CH3 CH3 CH3 CH3 H H H H enantiomers 1 diastereomers Cl Br Br Cl S S R R CH3 H H CH3 H CH3 CH3 H enantiomers 2 87
  • 88. 2,3-Dichlorobutane Cl Cl Cl Cl S R mirror image CH3 CH3 CH3 is identical CH3 H H H H meso diastereomers Cl Cl Cl Cl S S R R CH3 H H CH3 H CH3 CH3 H enantiomers 88
  • 89. Tartaric Acid (-) - tartaric acid (+) - tartaric acid [α]D = -12.0o [α]D = +12.0o mp 168 - 170o mp 168 - 170o solubility of 1 g solubility of 1 g 0.75 mL H2O 0.75 mL H2O 1.7 mL methanol 1.7 mL methanol 250 mL ether 250 mL ether insoluble CHCl3 insoluble CHCl3 d = 1.758 g/mL d = 1.758 g/mL meso - tartaric acid [α ]D = 0 o solubility of 1 g mp 140o 0.94 mL H2O d = 1.666 g/mL insoluble CHCl3 89
  • 91. CH 3 H OH Fischer Projections CH 2 CH 3 Fischer projection: a two-dimensional representation showing the configuration of a stereocenter horizontal lines represent bonds projecting forward vertical lines represent bonds projecting to the rear the only atom in the plane of the paper is the stereocenter 91
  • 92. Fischer Projections COOH COOH C H OH H OH CH3 CH3 How? (R)-lactic acid 92
  • 93. Fischer Projections COOH COOH H C H OH OH CH3 CH3 93
  • 94. Fischer Projections COOH COOH H OH H OH CH3 CH3 94
  • 95. Fischer Projections 1. Orient the stereocenter so that bonds projecting away from you are vertical and bonds projecting toward you are horizontal 2. Flatten it to two dimensions OH CH3 CH 3 C (1) H C OH (2) H OH H CH 3 CH3 CH 2 CH 2 CH 3 CH 2 CH 3 (S)-2-Butanol (S)-2-Butanol (3-D formula) (Fischer projection) 95
  • 96. Assigning R,S Configuration Lowest priority group goes to the top. View rest of projection. A curved arrow from highest to lowest priority groups. Clockwise - R (rectus) Counterclockwise - S (sinister) 96
  • 97. Assigning R,S Configuration 4 H 2 3 H 3C COOH OH 1 s-lactic acid 97
  • 98. Rules of Motion ď‚Ś Can rotate 180°, but not 90° because 90° disobeys the Fischer projection. Same groups go in and out of plane COOH COOH CH3 CH3 H OH 180 HO H =H OH HO H = CH3 CH3 COOH COOH 98
  • 99. Rules of Motion ď‚Ś Can rotate 180°, but not 90° because 90° disobeys the Fischer projection. Different groups go in and out of plane This generates an enantiomeric structure COOH COOH H H H OH 90 H 3C COOH =H OH H 3C COOH = CH3 CH3 OH OH (R)-lactic acid (S)-lactic acid 99
  • 100. Rules of Motion ď‚Ť One group can be held steady and the others rotated. COOH COOH H OH same as HO CH3 CH3 H 100
  • 101. Rules of Motion To determine if two Fischer projections represent the same enantiomer carry out allowed motions. H C 2H 5 OH H 3C C 2H 5 HO H H CH3 OH CH3 C 2H 5 A B C 101
  • 102. H C 2H 5 OH H 3C C 2H 5 HO H H CH3 OH CH3 C 2H 5 Rules of Motion A B C By performing two allowed movements on B, we are able to generate projection A. Therefore, they are identical. CH2CH3 HO H CH3 CH3CH2 HO H H CH2CH3 CH3 CH2CH3 CH3 CH3 HO B A 102
  • 103. H C 2H 5 OH H 3C C 2H 5 HO H H CH3 OH CH3 C 2H 5 Rules of Motion A B C Perform one of the two allowed motions to place the group with lowest priority at the top of the Fischer projection. OH CH2CH3 H H CH 3 180 H OH CH3 H 3C CH2CH 90 CH2CH3 OH OH 103 C not A
  • 104. Priorities HOOC 1. NH2 CH3 H 2. COOH H 2N H HOOC NH2 CH3 CH3 3. CH3 4. H H H HOOC HOOC NH2 HOOC NH2 CH3 CH3 H 2N H CH3 S - stereochemistry 104
  • 105. 1-Bromo-2-chlorocyclohexane Br Cl Cl Br cis enantiomers diastereomers Br Br trans Cl Cl enantiomers 105
  • 106. 1-Bromo-2-chlorocyclopropane Br R Cl Cl R Br S S cis enantiomers diastereomers Br R Br R S S trans Cl Cl enantiomers 106
  • 107. 1,2-Dibromocyclopropane mirror image identical Br Br Br Br cis meso diastereomers Br Br trans Br Br enantiomers 107
  • 108. Biological Significance of Stereoisomers Structure causes Properties Stereochemistry Biological effects Example •Pasteur’s plant mold metabolized (+)-tartaric acid but not (-)-tartaric acid 108
  • 109. Biological Significance of Stereoisomers Thalidomide O •Marketed in 50 countries 1956-1962 Sedative for “hysterical” pregnant women N O Antiemetic to combat morning sickness N •Caused thousands of birth defects O O H Teratogen: causes fetal abnormalities One stereocenter •Sold as racemic mixture: 1:1 mixture of enantiomers R enantiomer = antiemetic (not teratogenic) S enantiomer = teratogenic (not antiemetic) •Single-enantiomer drug not useful: quickly racemizes in body 109
  • 110. Biological Significance of Stereoisomers Another Biological Effect: Odor O O enantiomers H H (R)-(-)-carvone (S)-(+)-carvone smells like spearmint smells like caraway Mirror image molecules do not have “mirror image effects” 110
  • 111. Biological Significance of Stereoisomers Of Hands, Gloves, and Biology Why do stereoisomers have different biological properties? •Many biological effects involve interaction with a cavity in enzyme or receptor •Good fit to cavity (i.e., strong binding) triggers enzyme or receptor R H OH •Enzymes and receptors are proteins; built from amino acids: H2N O •Most amino acids are chiral, so protein cavity is also chiral •Metaphor: Stereoisomer = left hand or right hand Protein hole = left glove or right glove Left hand fits left glove but not right glove Left hand triggers “left protein” but not “right protein” •(R)-carvone triggers spearmint smell receptor but not caraway smell receptor 111
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