Pulses occupy an important place in Indian agriculture. Within this protein-rich group of crops, red gram or pigeonpea occupies an important place among rainfed resource poor farmers because it provides quality food, fuel wood, broom and fodder. Hybrids are plants that result from controlled cross-breeding of two different but specific varieties or breeding lines of the same species of plant. Wild species are important sources of resistance to biotic and abiotic stresses as they have evolved to survive droughts, floods, extremes of temperature (heat/ cold) and have the capability to with stand damage by insect pests and diseases. Ten alleles reported unique to inter-specific derivatives of Cajanus cajan × C. scarabaeoides. The presence of alleles unique to specific population or group indicates an inimitable genetic variability at certain loci. This information is valuable to categorise interspecific hybrids with exclusive genetic variability, whose selection can increase the allele richness of breeding population (Saxena, 2015). High levels of resistance is available in wild Cajanus species, these are not being utilised adequately in pigeonpea breeding programs. The major limitation is due to the linkage drag and different incompatibility barriers between cultivated and wild species. Under such situations, pre-breeding provides a unique opportunity to expand primary gene pool by exploiting genetic variability present in wild species and cultivated germplasm and will ensure continuous supply of new and useful genetic variability into the breeding pipelines to develop new cultivars having high levels of resistance and broad genetic base (Sharma et al., 2013). The major limitation in successfully using Cajanus platycarpus for the improvement of cultivated pigeonpeais embryo abortion in the BC1 generation from the cross C. Platycarpus × C. cajan. This Cajanus platycarpus, although placed in the tertiary gene pool of pigeonpea, is now amenable to gene transfer with the development of suitable embryo rescue techniques (Mallikarjuna et al., 2011).