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CREDIT SEMINAR
SPEED BREEDING AND ITS IMPLICATIONS IN
CROP IMPROVEMENT
RONIKA THAKUR
(A-2018-30-046)
DEPARTMENT OF CROP
IMPROVEMENT
1
Contents
 Introduction
 Accelerated Breeding
 Methods of Accelerated Breeding
 Speed Breeding
 Procedure
 Case Studies
 Opportunities & Challenges
 Limitations
 Conclusion
2
Will we meet future demand ?
3
Traditional wheat breeding pipeline
4
Accelerated Breeding
5
 Time consuming line fixation stage
 Reduced breeding cycles
6
Accelerated Breeding
Non molecular
Breeding method
Rapid
Generation
Advanceme
nt
Double
d
Haploid
y
Shuttle
Breedin
g
Speed
Breedi
ng
Molecular Breeding
Method
Marker
Assisted
BC
Genomi
c
Selectio
n
7
Molecular Breeding
Methods
1) Marker Assisted Backcrossing
8
 MAS leads to improved
accuracy, cost or time saving,
fast screening and detection of
homozygosity
 MABC permits highly
efficient detection of target
gene or QTL, along with
combining multiple genes into
single recipient i.e. Marker
assisted pyramiding
BC2
P1 x F1
P1 x P2
BC1
Use ‘background’ markers to select plants that have most
recurrent parent genome and smallest % of donor
genome
2) Genomic Selection
9
 Complementary method to MAS based on making
genomic predictions from a large number of DNA
markers rather than focusing on specific gene
 Accurate selection of complex traits such as yield
and to shorten breeding cycle to increase genetic
gain
10
Non Molecular
Breeding Methods
1) Rapid Generation Advancement
11
 Enables quick line fixation by manipulating growth
conditions of plants such as flowering and seed set
 RGA is superior to other breeding methods in speed,
technical simplicity, less resource requirement and low
cost
 This shortened the variety development time and
breeding cycle by about 2 years
2)Traditional Inbreeding & Shuttle Breeding
• One generation per year
• Crossing to F6 takes 7 years
• Two generations per year
• Crossing to F6 takes 3.5 year
12
Shuttle Breeding
13
 Different field locations permits off season
breeding activities
 Improved selection, because field locations
contrasted for a broad range of diseases and
environmental conditions
3)Double Haploid Technology
14
Haploid Production
15
 Bulbosum Technique
 Anther/ Ovule culture
 Chromosome Elimination Technique
16
Chaudhary et al. 2005
First DH wheat variety of the country HIM
PRATHAM (DH-114)
17
Features of Him Pratham
 Pedigree VWFW 452 ×WW 24
 Semi Dwarf and Awned
 Protein & Gluten: 12.79 & 7.81%
 Facultative winter wheat
 Spreading early growth
 Av. Grain yield: 37-40q/ha
 1000 grain weight: 48gm
 Bold, hard & amber grains
 Sowing time: Oct- Nov
 Recommended fir dry & wet
temperate regions of N-W Himalayas
Developed by: Dr. HK Chaudhary
What is Speed Breeding?
A technique which involves extending
photoperiod and controlled growing
conditions such as temperature, soil media,
spacing etc. in glasshouses, enabling rapid
generation advancement by shortening the
breeding cycle.
18
19
Innovation !
 Inspired by NASA aiming to grow wheat and food crops in
Space
 Started from University of Queensland, John Innes Centre
and University of Sydney in Australia by Dr. Lee Hickey
and co- workers in wheat and peanut
20
Wheat growing on International Space Station
21
22
Speed Breeding work for multiple species
23
24
25
Temperature controlled glasshouse fitted with supplemental lighting
Low cost growth room lit with LEDsj
Harvesting of immature spikes
26
Cold treatment to promote germination
27
Speeding up the breeding pipeline
28
Breeder’s Equation
29
1st wheat variety DS Faraday using Speed Breeding; High
protein, milling wheat tolerant to Pre Harvest Sprouting
30
Speed Breeding Setup
 Light : PAR region (400-700 nm), ambient lighting with
LED
 Photoperiod : 22 hours with 2 hours of darkness
 Temperature : 22˚ C/ 17 ˚C for 22 hours light and 2 hours
dark
 Humidity : Ideally 60-70%
31
Equipment setup
32
Benchtop growth cabinet
 Hardware
 Cabinet structure
 Lighting system
 Temperature and humidity system
 Software installation and setup
Procedure
33
Preparing seed for sowing
Monitoring key growth stages,
parameters and phenotyping
Seed harvesting
Monitoring energy use
Case Studies
34
35
36
Method
Standard genotypes of spring wheat, durum wheat, barley and
Brachypodium distachyon were grown in controlled environmental
conditions with extended photoperiod and compared with glasshouse
with no supplementary light and heating.
Results
Plants grown under SB progressed to anthesis in approximately half
the time those from glass house conditions
37
Fig: a) Loss of function of awn suppressor B1 locus in T. aestivum cv. paragon
b) Reduced height (Rht) dwarfing gene (T. aestivum cv. maringa wild
type, maringa Rht-1, maringa Rht-3 from left to right)
38
Figure:
a) T. aestivum cv. cadenza
at 38 days post sowing
b) Hordeum vulgare cv.
braemar at 41 days post
sowing
c) B. distachyon 36 days
post sowing
d) B. napus cv. Bravo at
50 days post sowing
e) C. arietinum cv.
jimbour at 35 days post
sowing
d e
Mean days to anthesis
39
40
Results
41
 Different SB protocols were introduced for several crop
species viz. Spring wheat, durum wheat, barley, oats,
brassica species, chickpea, pea, linseed, quinoa and model
grass Brachypodium distachyon
 Protocol describes the growing conditions, soil media
composition, lighting, temperature and spacing which
promote growth in different crops
42
Results
43
A procedure in which, by combining embryo culture with
management of watering regimes, lighting intensity and
duration, temperature and quantity of potting mixture,
allows the production of upto eight generation of wheat and
nine generations of barley per annum.
44
 Speed Breeding Genomic Selection
 Accelerate transgenic
 Opportunity to combine it with CRISPR-Cas9
genome editing technique
 Plant phenotyping for traits: flowering time, plant
height, disease resistance, pod shattering etc.
45
Challenges & Limitations
 Different responses of different plant species when exposed
to extended photoperiod
 Early harvest of immature seed interfere with phenotyping
of some seed traits
 Initial investment is high
 No universal protocol due to diverse response of plant
species to photoperiod
46
Implications in Crop Improvement
 Six generations per year for spring wheat(Triticum
aestivum), durum wheat (T. durum), barley (Hordeum
vulgare), chickpea (Cicer arietinum )and pea (Pisum
sativum)
 Commercial peanut breeding program
 Multiple disease resistance in barley (Hordeum vulgare)
 Multiple quantitative traits in durum wheat (T. durum)
 Physiological traits viz. awn morphology, flowering time,
plant height etc.
 Mutant transformation i.e. waxy less mutant in barley
47
Accelerated Breeding can contribute to hasten the plant
growth to accelerate research and development by
reducing breeding cycles. Moreover, SB as a platform can
combine with several other technologies to get the end
result faster. With the success in SB particularly in wheat
crop, India can also initiate such facilities for quick
development of new varieties.
48
Conclusion
49

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SPEED BREEDING AND ITS IMPLICATIONS IN CROP IMPROVEMENT

  • 1. CREDIT SEMINAR SPEED BREEDING AND ITS IMPLICATIONS IN CROP IMPROVEMENT RONIKA THAKUR (A-2018-30-046) DEPARTMENT OF CROP IMPROVEMENT 1
  • 2. Contents  Introduction  Accelerated Breeding  Methods of Accelerated Breeding  Speed Breeding  Procedure  Case Studies  Opportunities & Challenges  Limitations  Conclusion 2
  • 3. Will we meet future demand ? 3
  • 5. Accelerated Breeding 5  Time consuming line fixation stage  Reduced breeding cycles
  • 6. 6 Accelerated Breeding Non molecular Breeding method Rapid Generation Advanceme nt Double d Haploid y Shuttle Breedin g Speed Breedi ng Molecular Breeding Method Marker Assisted BC Genomi c Selectio n
  • 8. 1) Marker Assisted Backcrossing 8  MAS leads to improved accuracy, cost or time saving, fast screening and detection of homozygosity  MABC permits highly efficient detection of target gene or QTL, along with combining multiple genes into single recipient i.e. Marker assisted pyramiding BC2 P1 x F1 P1 x P2 BC1 Use ‘background’ markers to select plants that have most recurrent parent genome and smallest % of donor genome
  • 9. 2) Genomic Selection 9  Complementary method to MAS based on making genomic predictions from a large number of DNA markers rather than focusing on specific gene  Accurate selection of complex traits such as yield and to shorten breeding cycle to increase genetic gain
  • 11. 1) Rapid Generation Advancement 11  Enables quick line fixation by manipulating growth conditions of plants such as flowering and seed set  RGA is superior to other breeding methods in speed, technical simplicity, less resource requirement and low cost  This shortened the variety development time and breeding cycle by about 2 years
  • 12. 2)Traditional Inbreeding & Shuttle Breeding • One generation per year • Crossing to F6 takes 7 years • Two generations per year • Crossing to F6 takes 3.5 year 12
  • 13. Shuttle Breeding 13  Different field locations permits off season breeding activities  Improved selection, because field locations contrasted for a broad range of diseases and environmental conditions
  • 15. Haploid Production 15  Bulbosum Technique  Anther/ Ovule culture  Chromosome Elimination Technique
  • 17. First DH wheat variety of the country HIM PRATHAM (DH-114) 17 Features of Him Pratham  Pedigree VWFW 452 ×WW 24  Semi Dwarf and Awned  Protein & Gluten: 12.79 & 7.81%  Facultative winter wheat  Spreading early growth  Av. Grain yield: 37-40q/ha  1000 grain weight: 48gm  Bold, hard & amber grains  Sowing time: Oct- Nov  Recommended fir dry & wet temperate regions of N-W Himalayas Developed by: Dr. HK Chaudhary
  • 18. What is Speed Breeding? A technique which involves extending photoperiod and controlled growing conditions such as temperature, soil media, spacing etc. in glasshouses, enabling rapid generation advancement by shortening the breeding cycle. 18
  • 20.  Inspired by NASA aiming to grow wheat and food crops in Space  Started from University of Queensland, John Innes Centre and University of Sydney in Australia by Dr. Lee Hickey and co- workers in wheat and peanut 20
  • 21. Wheat growing on International Space Station 21
  • 22. 22
  • 23. Speed Breeding work for multiple species 23
  • 24. 24
  • 25. 25 Temperature controlled glasshouse fitted with supplemental lighting Low cost growth room lit with LEDsj
  • 27. Cold treatment to promote germination 27
  • 28. Speeding up the breeding pipeline 28
  • 30. 1st wheat variety DS Faraday using Speed Breeding; High protein, milling wheat tolerant to Pre Harvest Sprouting 30
  • 31. Speed Breeding Setup  Light : PAR region (400-700 nm), ambient lighting with LED  Photoperiod : 22 hours with 2 hours of darkness  Temperature : 22˚ C/ 17 ˚C for 22 hours light and 2 hours dark  Humidity : Ideally 60-70% 31
  • 32. Equipment setup 32 Benchtop growth cabinet  Hardware  Cabinet structure  Lighting system  Temperature and humidity system  Software installation and setup
  • 33. Procedure 33 Preparing seed for sowing Monitoring key growth stages, parameters and phenotyping Seed harvesting Monitoring energy use
  • 35. 35
  • 36. 36 Method Standard genotypes of spring wheat, durum wheat, barley and Brachypodium distachyon were grown in controlled environmental conditions with extended photoperiod and compared with glasshouse with no supplementary light and heating. Results Plants grown under SB progressed to anthesis in approximately half the time those from glass house conditions
  • 37. 37 Fig: a) Loss of function of awn suppressor B1 locus in T. aestivum cv. paragon b) Reduced height (Rht) dwarfing gene (T. aestivum cv. maringa wild type, maringa Rht-1, maringa Rht-3 from left to right)
  • 38. 38 Figure: a) T. aestivum cv. cadenza at 38 days post sowing b) Hordeum vulgare cv. braemar at 41 days post sowing c) B. distachyon 36 days post sowing d) B. napus cv. Bravo at 50 days post sowing e) C. arietinum cv. jimbour at 35 days post sowing d e
  • 39. Mean days to anthesis 39
  • 40. 40
  • 41. Results 41  Different SB protocols were introduced for several crop species viz. Spring wheat, durum wheat, barley, oats, brassica species, chickpea, pea, linseed, quinoa and model grass Brachypodium distachyon  Protocol describes the growing conditions, soil media composition, lighting, temperature and spacing which promote growth in different crops
  • 42. 42
  • 43. Results 43 A procedure in which, by combining embryo culture with management of watering regimes, lighting intensity and duration, temperature and quantity of potting mixture, allows the production of upto eight generation of wheat and nine generations of barley per annum.
  • 44. 44
  • 45.  Speed Breeding Genomic Selection  Accelerate transgenic  Opportunity to combine it with CRISPR-Cas9 genome editing technique  Plant phenotyping for traits: flowering time, plant height, disease resistance, pod shattering etc. 45
  • 46. Challenges & Limitations  Different responses of different plant species when exposed to extended photoperiod  Early harvest of immature seed interfere with phenotyping of some seed traits  Initial investment is high  No universal protocol due to diverse response of plant species to photoperiod 46
  • 47. Implications in Crop Improvement  Six generations per year for spring wheat(Triticum aestivum), durum wheat (T. durum), barley (Hordeum vulgare), chickpea (Cicer arietinum )and pea (Pisum sativum)  Commercial peanut breeding program  Multiple disease resistance in barley (Hordeum vulgare)  Multiple quantitative traits in durum wheat (T. durum)  Physiological traits viz. awn morphology, flowering time, plant height etc.  Mutant transformation i.e. waxy less mutant in barley 47
  • 48. Accelerated Breeding can contribute to hasten the plant growth to accelerate research and development by reducing breeding cycles. Moreover, SB as a platform can combine with several other technologies to get the end result faster. With the success in SB particularly in wheat crop, India can also initiate such facilities for quick development of new varieties. 48 Conclusion
  • 49. 49

Editor's Notes

  1. RGA= Rapid Generation Advancement