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Sanjay Kumar Sanadya
Ph.D. Scholar (GPB)
GP 691
Speed Breeding- A Powerful
tool to accelerate Crop
Breeding
Introduction
Population rise Climate change Urbanization
Land degradation
Pressure on Food
Supply
Meeting future
food demand is
CHALLENGE..!
Traditional
Breeding
(Years)
Bulk
method
(17-20)
Pedigree
method
(13-14)
Mass
selection
(8)
Synthetics
(7)
Composite
(8)
Pureline &
Clonal
selection
(10)
Backcross
method
(12-13)
A B
Speed Breeding
 In the early 1980s, NASA’s efforts to grow wheat
on Space Station.
 Coined term by teams of University of Queensland
and University of Sydney, Australia (2003)
 It is a technology which shortens the breeding
cycle and accelerates crop research through
rapid generation advancement (RGA).
Speed Breeding
Shorten breeding
cycle
Doubled Haploid
Breeding
Marker Assisted
Breeding
Rapid Generation
Advancement
Androgenesis
Chromosome elimination
Mediated
Marker Assisted Selection Genomic Selection
Comparison of timeline required to develop F6 fixed lines using these strategies
Rapid Generation Advancement
Rapid
Generation
Advancement
Speed up the
breeding cycle (4-
6
generations/year)
Less area
&
laborious
Acceleration
of genetic
gain
Controlled
condition
Factors
Light
Photoperiod
PGRs
CO2/ O3
Conc.
Soil
factors
Humidity
Temperature
Wheat growing at University of Queensland
by Speed Breeding
The biologically inactive form of phytochrome (Pr) is converted to the biologically active
form Pfr under illumination with red light. Far-red light and darkness convert the molecule
back to the inactive form.
Photoperiod in plants
Use of helio spectral LED Reducing operating cost
using LED
High pressure sodium vapour
lamps
Supplementary light system
Downs 1980
Drying in oven/dehydrator
Breeder’s equation
Genetic gain over time
Selection Intensity
Years per cycle
Voss-Fels et al. 2018
28 %
20 %
6.7 t/ha
37 %
42 %
2
Facilities
for RGA
Phytotron
Off season
nursery
Green
house
Off season nursery
Crop Off- season location
Rice Odisha & TS
Wheat TN, HP
Maize UK, UP, TS & Bihar
Pulses HP
Chickpea KN & J & K
Brassica species HP
Pearl Millet TS & TN
Two crop season per year
Required large scale area
Environment sensitive
Off Season Nursery Rice at NRRI, Cuttack
Off Season Nursery Wheat at Lahaul and Spiti, HP
Greenhouse Phytotron Facility
CSK HPKV, Palampur
Phytotron
• Term coined by F.W. Went (1949)
• Complex form of Green house
• Environmentally controlled facility
• Consisting incubators, seed germination chambers,
photoperiod rooms and refrigerated room
• Several environmental factors can be studied
simultaneously
Phytotron and its variants
Phytotron
Earhart
Plant
Research
Laboratory,
California
(1949)
National
Phytotron
Facility,
New Delhi
(1997)
AU,
Jodhpur
(2021)
RapidGen,
ICRISAT,
Hyderabad
CSK
HPKV,
Palampur
(2021)
Variants
Climatron,
Missouri
Ecotron,
London
Brisatron,
South
Carolina
Biotron,
Madison
2700 m2 Area
22 growth
chambers
10 greenhouses
Ghosh et al. (2018)
SPEED BREEDING GLASSHOUSE
CONTROL
WHEAT
BARLEY
CHICKPEA
CANOLA
a) Wheat (T. aestivum cv.
Cadenza) at 38 days post
sowing
b) Barley at 41 days post
sowing
c) Diploid Oat (A. strigosa) at
52 days after sowing
d) Canola at 50 days post
sowing
e) Chickpea at 35 days post
sowing
Watson et al. (2018)
Speed breeding works with different crops
f
Oat
c
Speed breeding (left) and controlled conditions (right)
Case study -1
Genotypes of spring wheat, durum wheat, barley and Brachypodium distachyon were grown
in controlled environmental conditions with extended photoperiod and compared with
glasshouse having no supplementary light and heating.
Method
Speed breeding methods
Results
Method -1
• Anthesis in approximately half the time than those in greenhouse
• Viability of mature seeds not affected
• Healthy no. of spikes/plant
• Seed count per spike decreased but not significantly
Method- 2
• More spikes in wheat than normal conditions
• Grain no. unaffected by rapid development in wheat and barley
• Seed viability – either unaffected or improved
Method – 3
• Equivalent effect as compare to Method-1 including small no. of population
• However requires less area
• Permits 4-5 generation per year
Case study -2
Presented a speed breeding protocol based on light-emitting diodes (LEDs) that allow to modify light quality,
and demonstrate its effectiveness for the short-day crops Soybean (Glycine max), Rice (Oryza sativa) and
Amaranth (Amaranthus spp.) by adjusting the photoperiod to 10 hours and 14 hours dark
Method
Soybean - Flowered 23 days after sowing and matured within 77 days = 5 generations per year.
- No impact of far-red light on flowering
- Blue light enriched and far-red deprived light spectrum useful
RESULTS
Flowering in rice - 60 days
after sowing
Flowering in amaranth - 35
days after sowing.
Advanced flowering in Rice - 10 days
Amaranth – 20 days
Highlighting the importance of light quality
for speed breeding protocols
Use of far-red
light
1st wheat variety using speed breeding – DS Faraday
 Introduced from landraces of China and
Africa
 High protein
 Milling wheat
 Tolerant to pre harvest sprouting (novel trait
in Australia)
Benefits of Speed Breeding for Plant Research
• Used to rapidly generate fixed populations through SSD, which
in some species may be cheaper than generating double
haploids, for subsequent field evaluation and selection
• Reduce varietal development period
• Suitable for diverse germplasm
• Many diverse homozygous lines can be produced at a time
• Reduce cost and space requirements
• Little effect on seed quality or quantity, and even on
phenotype
• Detailed study of Plant pathogen interactions
• Combine with conventional breeding
• Acceleration of transgenic crops
• Genomic selection with SB
• Combine with genome editing
technique
• Phenotyping for qualitative traits
• SB for numerous horticultural crops
Opportunities Challenges & limitations
• High initial investment
• Phenotyping for seed traits
• No universal protocol
• SB is a new approach to develop new crop varieties faster
• Meet future food demands
• Climate-resilient crops
• High-throughput phenotyping and genotyping
• Require small area
• SB can combine with other innovative technologies to get result
faster
• Extend to other disciplines
CONCLUSION
THANK YOU

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Credit seminar

  • 1. Sanjay Kumar Sanadya Ph.D. Scholar (GPB) GP 691 Speed Breeding- A Powerful tool to accelerate Crop Breeding
  • 2. Introduction Population rise Climate change Urbanization Land degradation Pressure on Food Supply Meeting future food demand is CHALLENGE..!
  • 4. Speed Breeding  In the early 1980s, NASA’s efforts to grow wheat on Space Station.  Coined term by teams of University of Queensland and University of Sydney, Australia (2003)  It is a technology which shortens the breeding cycle and accelerates crop research through rapid generation advancement (RGA).
  • 5. Speed Breeding Shorten breeding cycle Doubled Haploid Breeding Marker Assisted Breeding Rapid Generation Advancement
  • 7. Marker Assisted Selection Genomic Selection
  • 8. Comparison of timeline required to develop F6 fixed lines using these strategies Rapid Generation Advancement Rapid Generation Advancement Speed up the breeding cycle (4- 6 generations/year) Less area & laborious Acceleration of genetic gain Controlled condition
  • 10. Wheat growing at University of Queensland by Speed Breeding
  • 11. The biologically inactive form of phytochrome (Pr) is converted to the biologically active form Pfr under illumination with red light. Far-red light and darkness convert the molecule back to the inactive form. Photoperiod in plants
  • 12. Use of helio spectral LED Reducing operating cost using LED High pressure sodium vapour lamps Supplementary light system
  • 15. Breeder’s equation Genetic gain over time Selection Intensity Years per cycle Voss-Fels et al. 2018 28 % 20 % 6.7 t/ha 37 % 42 % 2
  • 17. Off season nursery Crop Off- season location Rice Odisha & TS Wheat TN, HP Maize UK, UP, TS & Bihar Pulses HP Chickpea KN & J & K Brassica species HP Pearl Millet TS & TN Two crop season per year Required large scale area Environment sensitive Off Season Nursery Rice at NRRI, Cuttack Off Season Nursery Wheat at Lahaul and Spiti, HP
  • 19. Phytotron • Term coined by F.W. Went (1949) • Complex form of Green house • Environmentally controlled facility • Consisting incubators, seed germination chambers, photoperiod rooms and refrigerated room • Several environmental factors can be studied simultaneously
  • 20.
  • 21. Phytotron and its variants Phytotron Earhart Plant Research Laboratory, California (1949) National Phytotron Facility, New Delhi (1997) AU, Jodhpur (2021) RapidGen, ICRISAT, Hyderabad CSK HPKV, Palampur (2021) Variants Climatron, Missouri Ecotron, London Brisatron, South Carolina Biotron, Madison 2700 m2 Area 22 growth chambers 10 greenhouses
  • 22.
  • 23. Ghosh et al. (2018) SPEED BREEDING GLASSHOUSE CONTROL WHEAT BARLEY CHICKPEA CANOLA
  • 24. a) Wheat (T. aestivum cv. Cadenza) at 38 days post sowing b) Barley at 41 days post sowing c) Diploid Oat (A. strigosa) at 52 days after sowing d) Canola at 50 days post sowing e) Chickpea at 35 days post sowing Watson et al. (2018) Speed breeding works with different crops f Oat c Speed breeding (left) and controlled conditions (right)
  • 25. Case study -1 Genotypes of spring wheat, durum wheat, barley and Brachypodium distachyon were grown in controlled environmental conditions with extended photoperiod and compared with glasshouse having no supplementary light and heating. Method
  • 27. Results Method -1 • Anthesis in approximately half the time than those in greenhouse • Viability of mature seeds not affected • Healthy no. of spikes/plant • Seed count per spike decreased but not significantly Method- 2 • More spikes in wheat than normal conditions • Grain no. unaffected by rapid development in wheat and barley • Seed viability – either unaffected or improved Method – 3 • Equivalent effect as compare to Method-1 including small no. of population • However requires less area • Permits 4-5 generation per year
  • 28. Case study -2 Presented a speed breeding protocol based on light-emitting diodes (LEDs) that allow to modify light quality, and demonstrate its effectiveness for the short-day crops Soybean (Glycine max), Rice (Oryza sativa) and Amaranth (Amaranthus spp.) by adjusting the photoperiod to 10 hours and 14 hours dark Method
  • 29. Soybean - Flowered 23 days after sowing and matured within 77 days = 5 generations per year. - No impact of far-red light on flowering - Blue light enriched and far-red deprived light spectrum useful RESULTS
  • 30. Flowering in rice - 60 days after sowing Flowering in amaranth - 35 days after sowing. Advanced flowering in Rice - 10 days Amaranth – 20 days Highlighting the importance of light quality for speed breeding protocols Use of far-red light
  • 31. 1st wheat variety using speed breeding – DS Faraday  Introduced from landraces of China and Africa  High protein  Milling wheat  Tolerant to pre harvest sprouting (novel trait in Australia)
  • 32. Benefits of Speed Breeding for Plant Research • Used to rapidly generate fixed populations through SSD, which in some species may be cheaper than generating double haploids, for subsequent field evaluation and selection • Reduce varietal development period • Suitable for diverse germplasm • Many diverse homozygous lines can be produced at a time • Reduce cost and space requirements • Little effect on seed quality or quantity, and even on phenotype • Detailed study of Plant pathogen interactions
  • 33. • Combine with conventional breeding • Acceleration of transgenic crops • Genomic selection with SB • Combine with genome editing technique • Phenotyping for qualitative traits • SB for numerous horticultural crops Opportunities Challenges & limitations • High initial investment • Phenotyping for seed traits • No universal protocol
  • 34. • SB is a new approach to develop new crop varieties faster • Meet future food demands • Climate-resilient crops • High-throughput phenotyping and genotyping • Require small area • SB can combine with other innovative technologies to get result faster • Extend to other disciplines CONCLUSION