SlideShare a Scribd company logo
MASTER SEMINAR
ON
GENOMICS AND ITS APPLICATION IN CROP
IMPROVEMENT
DATE-24/03/2018
SPEAKER
KHEMLATA THAKUR
M.Sc. (Ag.) Previous
Dept. of Genetics & Plant Breeding
CoA, I.G.K.V, Raipur
CONTENTS
• Meaning of Genomics
• Types of Genomics
• Classification of Genomics
• Genome sequencing
• Genes to be Mapped
• Genome Mapping in India
• Role of Genomics in Crop Improvement
• Limitations of Genomics
WHAT IS GENOMICS?
• Genomics term was given by Thomas Roderick in
1986.
• Genomics = the branch of molecular biology
concerned with the structure, function, evolution and
mapping of genomes.
• Genome = the complete set of genes or genetic
material present in a cell or organism.
Genomics is the sub discipline of genetics
devoted to the
 mapping,
 sequencing ,
 and functional analysis of
genome
 The field includes studies of
intra-genomic phenomena
such as heterosis, epistasis,
pleiotropy and other
interactions between loci
and alleles within the genome.
GENETICS VS GENOMICS
and variation
Main points related to genomics
 It is a computer aided study of structure and function of entire
genome of an organism.
 It deals with mapping and sequencing of genes on the
chromosomes.
 It is a rapid and accurate method of gene mapping. It is more
accurate than recombination mapping and deletion mapping
techniques.
 The genomic techniques are highly powerful, efficient and
effective in solving complex genetic problems.
 Now use of genomic techniques has become indispensable in
plant breeding and genetics.
CLASSIFICATION
OF GENOMICS
Eukaryotic
Genomics
Prokaryotic
Genomics
GENOME SEQUENCING
 Genome sequencing is figuring out the
order of DNA nucleotides, or bases, in a
genome-the order of A, C, G, and T that
make up an organism's DNA.
 The human genome is made up of over 3
billion of these genetic letters.
Why we need to sequence genome ??
• It determines complete genetic information present in
the genome.
• It provides insights on genome organization and
evolution.
• It has opened up exciting areas for functional
genomics.
• It allows to workout the various molecular interactions.
• Information like SNPs have become available.
• It may provide an understanding of
pharmacogenomics.
• Better understanding of human genetic disease .
• Pathogenicity would be better understood.
Methods of gene sequencing
1. Maxam- Gilbert sequencing
2. Chain termination method
3. Pyro-sequencing
4. Nanopore sequencing
5. Clone by clone sequencing
6. Shotgun sequencing
ACHIEVEMENTS
EVENTS YEAR
• Discussion in scientific community for sequencing genome 1984-1990
• Human genome project proposed 1986
• Human genome project initiated Oct .1,1990
• Haemophilu influenzae genome sequenced 1995
• E.coli genome sequenced 1997
• Yeast (Saccharomyces cerevisiae) genome sequenced 1999
• Worm (Caenorhabditis elegans) genome sequenced 1999
• Arabidopsis thaliana(a weed) genome sequenced 2000
• Human genome working draft published (90% genome
sequenced)
June 26,2001
Genome Size and Gene Number
in some crop plants
CROPS GENOME
SIZE(Mb)
GENE
NO.
YEAR REFERENCE
1) Rice (Oryza sativa) 370 40577 2002 Goff, et al.,
2) Corn (Zea mays) 2500 >32000 2009 Schnable, P et al.
3) Sorghum
(Sorghum bicolor )
700 34496 2009 Paterson , A et al
4) Wheat
(Triticum urartu)
392 - 2013 Ling HQ et al
5) Arabidopsis
(Arabidopsis thaliana)
120 27417 2000 -
6) Soybean
(Glycine max)
950 46430 2010 Haung, et al.
7) Pigeon pea
(Cajanus cajan)
833 48680 2011 Varshney , et al,
8)Potato
(Solanum tuberosum)
844 39031 2011 PGS Constorium
9)Flax
(Linum usitatissimum)
686 43384 2012 Wang,et al
Gene to be mapped
 Morphological Characters:
It includes highly heritable traits such as shape, size and colour of
leaf, flower ,calyx, corolla, etc. It also includes surface of leaf
and stem (hairiness and smoothness).
 Productivity traits:
Such characters differ from species to species.
 Resistance Traits:
Such characters include resistance to diseases, insects, drought,
soil salinity, soil alkalinity, soil acidity, heat, frost, water logging, cold, etc.
 Quality Traits:
Such traits include nutritional quality, market quality and keeping quality.
 Agronomic Traits:
Such traits include earliness, plant height, plant type, etc.
 Special Characters:
Such characters include genes controlling male sterility, self
incompatibility, photo and thermo-insensitivity, toxic
substances, apomixes, adaptation, etc.
Conventional breeding to molecular
breeding
through Genomic research ?
 Through conventional breeding, selection for crop
improvement is carried out on phenotypic character, which is
the result of genotypic and environmental effects.
 The difficulties of phenotype based selection can be
overcome by direct selection for genotype using DNA
markers that co-segregate with the genes of interest.
 Many potential genes that confer resistance have been
mapped in economical crops like rice.
Contd…..
 In conventional breeding normally options of presence of genes can
be identified, when expression where comes during adverse
condition. By the use of genomic research now we can easily identify
the presence or absence of gene in early stage.
 By the use of molecular markers exact location of particular gene on
chromosome can easily be identified.
 Presence of all of the important genes and related markers will be
very much helpful to identified and development of new cultivars as
we desire - Varietal identification.
 Insertion and deletions are desirable or undesirable, easily be
possible to identify with the sequencing of genome.
Genome Mapping in India:
• In India, the functional genome research projects are looked after
by the Depart of Biotechnology [DBT] and ICAR.
• The DBT has initiated such work on several crops such as rice,
wheat, maize, chick pea, banana, tomato, Brassica, etc.
• The ICAR has created genome mapping facilities for rice at
NRC-PB, IARI, New Delhi.
• In India, the genome mapping work is carried out at the following
centres.
i. National Research Centre for Plant Biotechnology, IARI, New
Delhi.
ii. International Centre for Genetic Engineering and
Biotechnology, New Delhi.
iii. Jawahar Lal Nehru University, New Delhi.
iv. National Botanical Research Institute, Lucknow.
Application of Genomics in Crop
Improvement
•Genome size
•Gene number
•Gene mapping
•Gene sequencing
•Evolution of crop plants
•Gene cloning
•Identification of DNA markers
•Marker assisted selection
•Transgenic breeding
•Construction of linkage maps
•QTL mapping
It is useful
and
provides
information
about
Implementation of genomics in
different crops
Case study
results
• An indica variety with small grain size was crossed to a
japonica variety with large grain size to construct a set of
recombinant inbred lines (RILs) which was used to identify
quantitative trait loci (QTLs) controlling eight grain quality
traits.
• Based on a linkage map of 185 SSR markers, a total of 16
QTLs were mapped on six chromosomes.
• A pleiotropic main effect QTL (M-QTL) flanked by RM3204
and RM16 on chromosome 3 influences the grain length (GL),
length width ratio (LWR) and head rice ratio (HRR), explaining
the phenotypic variation of 46.0, 36.1 and 29.7%, respectively.
• A total of 18 epistatic QTLs were identified for all the traits ,
distributed on all the chromosomes except chromosome 10.
GENOMICS STATUS at RRL,IGKV
• Almost all the facilities are available for genomics
• work on structural genomics, functional genomics, are
carried on in RRL
• All kind of markers are available in RRL like SSR. RAPD
etc. For selection, pyramiding .
• Gene mapping ,gene sequencing is done in various crops such
as vegetables, oilseeds basically in rice.
• Advance euipment’s present in RRL are PCR machine, gel
electrophoresis.
• ion torrent machine for gene sequencing
• Availabilty of Taqman based SNP Genotyping.
LIMITATIONS
1. Expensive Technique
2. High technical skill
3. Laborious work
4. Limited genes Available
5. Lack of proper markers
CONCLUSION
.
• Marker technology has rapidly exerted influence in plant
breeding due to advances in genomics.
• Functional markers have contributed to diagnostics technology
that enable identification of molecules or sequences that
contribute or participate during plant response to various
stresses.
• This has enabled designing of better crop/plant varieties.
• The future of food security depends on availability of funding
to improve agricultural practises for millions of people in
developing countries who depend on it as a source of income
and to ensure the worlds poor are foods secure.
THANK
YOU

More Related Content

What's hot

Omics for crop improvement (new)
Omics for crop improvement (new)Omics for crop improvement (new)
Omics for crop improvement (new)
Gokul Dhana
 
Qtl mapping
 Qtl mapping  Qtl mapping
Qtl mapping
Vinod Pawar
 
MARKER ASSISTED SELECTION
MARKER ASSISTED SELECTIONMARKER ASSISTED SELECTION
MARKER ASSISTED SELECTION
Gauravrajsinh Vaghela
 
Marker assisted selection
Marker assisted selectionMarker assisted selection
Marker assisted selection
FAO
 
QTL
QTLQTL
Functional genomics, and tools
Functional genomics, and toolsFunctional genomics, and tools
Functional genomics, and tools
KAUSHAL SAHU
 
Molecular Marker and It's Applications
Molecular Marker and It's ApplicationsMolecular Marker and It's Applications
Molecular Marker and It's Applications
Suresh Antre
 
Allele mining
Allele miningAllele mining
Allele mining
arjun pimple
 
Mapping population ppt
Mapping population pptMapping population ppt
Mapping population ppt
Srishti Aggrawal
 
Mapping
MappingMapping
Biosafety issues related to GM crops
Biosafety issues related to GM cropsBiosafety issues related to GM crops
Biosafety issues related to GM crops
Monika Hajong
 
Marker Assisted Selection in Crop Breeding
 Marker Assisted Selection in Crop Breeding Marker Assisted Selection in Crop Breeding
Marker Assisted Selection in Crop Breeding
Pawan Chauhan
 
Molecular markers and Functional molecular markers
Molecular markers and Functional molecular markersMolecular markers and Functional molecular markers
Molecular markers and Functional molecular markers
Chandana B.R.
 
The Wheat Genome
The Wheat GenomeThe Wheat Genome
The Wheat Genome
sampath perumal
 
Omics in crop improvement
Omics in crop improvementOmics in crop improvement
Omics in crop improvement
Kasanaboina Krishna
 
Molecular Markers
Molecular MarkersMolecular Markers
Molecular Markers
Rachana Bagudam
 
Molecular plant breeding some basic information
Molecular plant breeding some basic informationMolecular plant breeding some basic information
Molecular plant breeding some basic information
bawonpon chonnipat
 
Genotyping by Sequencing
Genotyping by SequencingGenotyping by Sequencing
Genotyping by Sequencing
Senthil Natesan
 
Successes and limitations of conventional plant breeding methods
Successes and limitations of conventional plant breeding methodsSuccesses and limitations of conventional plant breeding methods
Successes and limitations of conventional plant breeding methods
University of Ghana
 
Molecular markers
Molecular markersMolecular markers
Molecular markers
Ahmad Ali khan
 

What's hot (20)

Omics for crop improvement (new)
Omics for crop improvement (new)Omics for crop improvement (new)
Omics for crop improvement (new)
 
Qtl mapping
 Qtl mapping  Qtl mapping
Qtl mapping
 
MARKER ASSISTED SELECTION
MARKER ASSISTED SELECTIONMARKER ASSISTED SELECTION
MARKER ASSISTED SELECTION
 
Marker assisted selection
Marker assisted selectionMarker assisted selection
Marker assisted selection
 
QTL
QTLQTL
QTL
 
Functional genomics, and tools
Functional genomics, and toolsFunctional genomics, and tools
Functional genomics, and tools
 
Molecular Marker and It's Applications
Molecular Marker and It's ApplicationsMolecular Marker and It's Applications
Molecular Marker and It's Applications
 
Allele mining
Allele miningAllele mining
Allele mining
 
Mapping population ppt
Mapping population pptMapping population ppt
Mapping population ppt
 
Mapping
MappingMapping
Mapping
 
Biosafety issues related to GM crops
Biosafety issues related to GM cropsBiosafety issues related to GM crops
Biosafety issues related to GM crops
 
Marker Assisted Selection in Crop Breeding
 Marker Assisted Selection in Crop Breeding Marker Assisted Selection in Crop Breeding
Marker Assisted Selection in Crop Breeding
 
Molecular markers and Functional molecular markers
Molecular markers and Functional molecular markersMolecular markers and Functional molecular markers
Molecular markers and Functional molecular markers
 
The Wheat Genome
The Wheat GenomeThe Wheat Genome
The Wheat Genome
 
Omics in crop improvement
Omics in crop improvementOmics in crop improvement
Omics in crop improvement
 
Molecular Markers
Molecular MarkersMolecular Markers
Molecular Markers
 
Molecular plant breeding some basic information
Molecular plant breeding some basic informationMolecular plant breeding some basic information
Molecular plant breeding some basic information
 
Genotyping by Sequencing
Genotyping by SequencingGenotyping by Sequencing
Genotyping by Sequencing
 
Successes and limitations of conventional plant breeding methods
Successes and limitations of conventional plant breeding methodsSuccesses and limitations of conventional plant breeding methods
Successes and limitations of conventional plant breeding methods
 
Molecular markers
Molecular markersMolecular markers
Molecular markers
 

Similar to Genomics and its application in crop improvement

genomics-180323095216.pptx
genomics-180323095216.pptxgenomics-180323095216.pptx
genomics-180323095216.pptx
Bharatlalmeena6
 
Genome Mapping And Biological Resources Slides.pptx
Genome Mapping And Biological Resources Slides.pptxGenome Mapping And Biological Resources Slides.pptx
Genome Mapping And Biological Resources Slides.pptx
AqsaZakaria
 
Genomic aided selection for crop improvement
Genomic aided selection for crop improvementGenomic aided selection for crop improvement
Genomic aided selection for crop improvement
tanvic2
 
Shriram belge (exome sequencing) 27 2003
Shriram belge (exome sequencing) 27  2003Shriram belge (exome sequencing) 27  2003
Shriram belge (exome sequencing) 27 2003
Shriram Belge
 
Genomics and bioinformatics
Genomics and bioinformatics Genomics and bioinformatics
Genomics and bioinformatics Senthil Natesan
 
Omics in plant breeding
Omics in plant breedingOmics in plant breeding
Omics in plant breeding
poornimakn04
 
Applied genomic research in rice genetic improvement (2)
Applied genomic research in rice genetic improvement (2)Applied genomic research in rice genetic improvement (2)
Applied genomic research in rice genetic improvement (2)
Lokesh Gour
 
Molecular Markers: Indispensable Tools for Genetic Diversity Analysis and Cro...
Molecular Markers: Indispensable Tools for Genetic Diversity Analysis and Cro...Molecular Markers: Indispensable Tools for Genetic Diversity Analysis and Cro...
Molecular Markers: Indispensable Tools for Genetic Diversity Analysis and Cro...
Premier Publishers
 
GENOMICS AND TRANSCRIPTONOMICS.7005.pptx
GENOMICS AND TRANSCRIPTONOMICS.7005.pptxGENOMICS AND TRANSCRIPTONOMICS.7005.pptx
GENOMICS AND TRANSCRIPTONOMICS.7005.pptx
KunalMeena15
 
Functional genomics,Pharmaco genomics, and Meta genomics.
Functional genomics,Pharmaco genomics, and Meta genomics.Functional genomics,Pharmaco genomics, and Meta genomics.
Functional genomics,Pharmaco genomics, and Meta genomics.
sangeeta jadav
 
Graduate seminar (Haramaya University)
Graduate seminar (Haramaya University)Graduate seminar (Haramaya University)
Graduate seminar (Haramaya University)
Messi Elias
 
Genomics
Genomics Genomics
Genomics
MEhsanmaqbool
 
Plant genome project, tahira ali rai
Plant genome project, tahira ali raiPlant genome project, tahira ali rai
Plant genome project, tahira ali rai
Tahira Rai
 
Genomics and proteomics ppt
Genomics and proteomics pptGenomics and proteomics ppt
Genomics and proteomics ppt
PatelSupriya
 
Post genomic tools for genetic enhancement of germplasm
Post genomic tools for genetic enhancement of germplasmPost genomic tools for genetic enhancement of germplasm
Post genomic tools for genetic enhancement of germplasm
Vishu1234567
 
Roleoffunctionalgenomicsincropimprovement ashishgautam
Roleoffunctionalgenomicsincropimprovement ashishgautamRoleoffunctionalgenomicsincropimprovement ashishgautam
Roleoffunctionalgenomicsincropimprovement ashishgautam
Ashish Gautam
 
molecular markers ,application in plant breeding
molecular markers ,application in plant breedingmolecular markers ,application in plant breeding
molecular markers ,application in plant breeding
Sunil Lakshman
 
Role of Marker Assisted Selection in Plant Resistance
Role of Marker Assisted Selection in Plant Resistance Role of Marker Assisted Selection in Plant Resistance
Role of Marker Assisted Selection in Plant Resistance
RandeepChoudhary2
 
GENOMICS AND BIOINFORMATICS
GENOMICS AND BIOINFORMATICSGENOMICS AND BIOINFORMATICS
GENOMICS AND BIOINFORMATICS
sandeshGM
 
Comparative genomics
Comparative genomicsComparative genomics
Comparative genomics
Jajati Keshari Nayak
 

Similar to Genomics and its application in crop improvement (20)

genomics-180323095216.pptx
genomics-180323095216.pptxgenomics-180323095216.pptx
genomics-180323095216.pptx
 
Genome Mapping And Biological Resources Slides.pptx
Genome Mapping And Biological Resources Slides.pptxGenome Mapping And Biological Resources Slides.pptx
Genome Mapping And Biological Resources Slides.pptx
 
Genomic aided selection for crop improvement
Genomic aided selection for crop improvementGenomic aided selection for crop improvement
Genomic aided selection for crop improvement
 
Shriram belge (exome sequencing) 27 2003
Shriram belge (exome sequencing) 27  2003Shriram belge (exome sequencing) 27  2003
Shriram belge (exome sequencing) 27 2003
 
Genomics and bioinformatics
Genomics and bioinformatics Genomics and bioinformatics
Genomics and bioinformatics
 
Omics in plant breeding
Omics in plant breedingOmics in plant breeding
Omics in plant breeding
 
Applied genomic research in rice genetic improvement (2)
Applied genomic research in rice genetic improvement (2)Applied genomic research in rice genetic improvement (2)
Applied genomic research in rice genetic improvement (2)
 
Molecular Markers: Indispensable Tools for Genetic Diversity Analysis and Cro...
Molecular Markers: Indispensable Tools for Genetic Diversity Analysis and Cro...Molecular Markers: Indispensable Tools for Genetic Diversity Analysis and Cro...
Molecular Markers: Indispensable Tools for Genetic Diversity Analysis and Cro...
 
GENOMICS AND TRANSCRIPTONOMICS.7005.pptx
GENOMICS AND TRANSCRIPTONOMICS.7005.pptxGENOMICS AND TRANSCRIPTONOMICS.7005.pptx
GENOMICS AND TRANSCRIPTONOMICS.7005.pptx
 
Functional genomics,Pharmaco genomics, and Meta genomics.
Functional genomics,Pharmaco genomics, and Meta genomics.Functional genomics,Pharmaco genomics, and Meta genomics.
Functional genomics,Pharmaco genomics, and Meta genomics.
 
Graduate seminar (Haramaya University)
Graduate seminar (Haramaya University)Graduate seminar (Haramaya University)
Graduate seminar (Haramaya University)
 
Genomics
Genomics Genomics
Genomics
 
Plant genome project, tahira ali rai
Plant genome project, tahira ali raiPlant genome project, tahira ali rai
Plant genome project, tahira ali rai
 
Genomics and proteomics ppt
Genomics and proteomics pptGenomics and proteomics ppt
Genomics and proteomics ppt
 
Post genomic tools for genetic enhancement of germplasm
Post genomic tools for genetic enhancement of germplasmPost genomic tools for genetic enhancement of germplasm
Post genomic tools for genetic enhancement of germplasm
 
Roleoffunctionalgenomicsincropimprovement ashishgautam
Roleoffunctionalgenomicsincropimprovement ashishgautamRoleoffunctionalgenomicsincropimprovement ashishgautam
Roleoffunctionalgenomicsincropimprovement ashishgautam
 
molecular markers ,application in plant breeding
molecular markers ,application in plant breedingmolecular markers ,application in plant breeding
molecular markers ,application in plant breeding
 
Role of Marker Assisted Selection in Plant Resistance
Role of Marker Assisted Selection in Plant Resistance Role of Marker Assisted Selection in Plant Resistance
Role of Marker Assisted Selection in Plant Resistance
 
GENOMICS AND BIOINFORMATICS
GENOMICS AND BIOINFORMATICSGENOMICS AND BIOINFORMATICS
GENOMICS AND BIOINFORMATICS
 
Comparative genomics
Comparative genomicsComparative genomics
Comparative genomics
 

Recently uploaded

Digital Tools and AI for Teaching Learning and Research
Digital Tools and AI for Teaching Learning and ResearchDigital Tools and AI for Teaching Learning and Research
Digital Tools and AI for Teaching Learning and Research
Vikramjit Singh
 
Welcome to TechSoup New Member Orientation and Q&A (May 2024).pdf
Welcome to TechSoup   New Member Orientation and Q&A (May 2024).pdfWelcome to TechSoup   New Member Orientation and Q&A (May 2024).pdf
Welcome to TechSoup New Member Orientation and Q&A (May 2024).pdf
TechSoup
 
Overview on Edible Vaccine: Pros & Cons with Mechanism
Overview on Edible Vaccine: Pros & Cons with MechanismOverview on Edible Vaccine: Pros & Cons with Mechanism
Overview on Edible Vaccine: Pros & Cons with Mechanism
DeeptiGupta154
 
Language Across the Curriculm LAC B.Ed.
Language Across the  Curriculm LAC B.Ed.Language Across the  Curriculm LAC B.Ed.
Language Across the Curriculm LAC B.Ed.
Atul Kumar Singh
 
Palestine last event orientationfvgnh .pptx
Palestine last event orientationfvgnh .pptxPalestine last event orientationfvgnh .pptx
Palestine last event orientationfvgnh .pptx
RaedMohamed3
 
TESDA TM1 REVIEWER FOR NATIONAL ASSESSMENT WRITTEN AND ORAL QUESTIONS WITH A...
TESDA TM1 REVIEWER  FOR NATIONAL ASSESSMENT WRITTEN AND ORAL QUESTIONS WITH A...TESDA TM1 REVIEWER  FOR NATIONAL ASSESSMENT WRITTEN AND ORAL QUESTIONS WITH A...
TESDA TM1 REVIEWER FOR NATIONAL ASSESSMENT WRITTEN AND ORAL QUESTIONS WITH A...
EugeneSaldivar
 
A Strategic Approach: GenAI in Education
A Strategic Approach: GenAI in EducationA Strategic Approach: GenAI in Education
A Strategic Approach: GenAI in Education
Peter Windle
 
Unit 2- Research Aptitude (UGC NET Paper I).pdf
Unit 2- Research Aptitude (UGC NET Paper I).pdfUnit 2- Research Aptitude (UGC NET Paper I).pdf
Unit 2- Research Aptitude (UGC NET Paper I).pdf
Thiyagu K
 
The Accursed House by Émile Gaboriau.pptx
The Accursed House by Émile Gaboriau.pptxThe Accursed House by Émile Gaboriau.pptx
The Accursed House by Émile Gaboriau.pptx
DhatriParmar
 
How to Make a Field invisible in Odoo 17
How to Make a Field invisible in Odoo 17How to Make a Field invisible in Odoo 17
How to Make a Field invisible in Odoo 17
Celine George
 
Francesca Gottschalk - How can education support child empowerment.pptx
Francesca Gottschalk - How can education support child empowerment.pptxFrancesca Gottschalk - How can education support child empowerment.pptx
Francesca Gottschalk - How can education support child empowerment.pptx
EduSkills OECD
 
Polish students' mobility in the Czech Republic
Polish students' mobility in the Czech RepublicPolish students' mobility in the Czech Republic
Polish students' mobility in the Czech Republic
Anna Sz.
 
Biological Screening of Herbal Drugs in detailed.
Biological Screening of Herbal Drugs in detailed.Biological Screening of Herbal Drugs in detailed.
Biological Screening of Herbal Drugs in detailed.
Ashokrao Mane college of Pharmacy Peth-Vadgaon
 
CACJapan - GROUP Presentation 1- Wk 4.pdf
CACJapan - GROUP Presentation 1- Wk 4.pdfCACJapan - GROUP Presentation 1- Wk 4.pdf
CACJapan - GROUP Presentation 1- Wk 4.pdf
camakaiclarkmusic
 
Honest Reviews of Tim Han LMA Course Program.pptx
Honest Reviews of Tim Han LMA Course Program.pptxHonest Reviews of Tim Han LMA Course Program.pptx
Honest Reviews of Tim Han LMA Course Program.pptx
timhan337
 
How libraries can support authors with open access requirements for UKRI fund...
How libraries can support authors with open access requirements for UKRI fund...How libraries can support authors with open access requirements for UKRI fund...
How libraries can support authors with open access requirements for UKRI fund...
Jisc
 
Unit 8 - Information and Communication Technology (Paper I).pdf
Unit 8 - Information and Communication Technology (Paper I).pdfUnit 8 - Information and Communication Technology (Paper I).pdf
Unit 8 - Information and Communication Technology (Paper I).pdf
Thiyagu K
 
The basics of sentences session 5pptx.pptx
The basics of sentences session 5pptx.pptxThe basics of sentences session 5pptx.pptx
The basics of sentences session 5pptx.pptx
heathfieldcps1
 
The geography of Taylor Swift - some ideas
The geography of Taylor Swift - some ideasThe geography of Taylor Swift - some ideas
The geography of Taylor Swift - some ideas
GeoBlogs
 
Chapter 3 - Islamic Banking Products and Services.pptx
Chapter 3 - Islamic Banking Products and Services.pptxChapter 3 - Islamic Banking Products and Services.pptx
Chapter 3 - Islamic Banking Products and Services.pptx
Mohd Adib Abd Muin, Senior Lecturer at Universiti Utara Malaysia
 

Recently uploaded (20)

Digital Tools and AI for Teaching Learning and Research
Digital Tools and AI for Teaching Learning and ResearchDigital Tools and AI for Teaching Learning and Research
Digital Tools and AI for Teaching Learning and Research
 
Welcome to TechSoup New Member Orientation and Q&A (May 2024).pdf
Welcome to TechSoup   New Member Orientation and Q&A (May 2024).pdfWelcome to TechSoup   New Member Orientation and Q&A (May 2024).pdf
Welcome to TechSoup New Member Orientation and Q&A (May 2024).pdf
 
Overview on Edible Vaccine: Pros & Cons with Mechanism
Overview on Edible Vaccine: Pros & Cons with MechanismOverview on Edible Vaccine: Pros & Cons with Mechanism
Overview on Edible Vaccine: Pros & Cons with Mechanism
 
Language Across the Curriculm LAC B.Ed.
Language Across the  Curriculm LAC B.Ed.Language Across the  Curriculm LAC B.Ed.
Language Across the Curriculm LAC B.Ed.
 
Palestine last event orientationfvgnh .pptx
Palestine last event orientationfvgnh .pptxPalestine last event orientationfvgnh .pptx
Palestine last event orientationfvgnh .pptx
 
TESDA TM1 REVIEWER FOR NATIONAL ASSESSMENT WRITTEN AND ORAL QUESTIONS WITH A...
TESDA TM1 REVIEWER  FOR NATIONAL ASSESSMENT WRITTEN AND ORAL QUESTIONS WITH A...TESDA TM1 REVIEWER  FOR NATIONAL ASSESSMENT WRITTEN AND ORAL QUESTIONS WITH A...
TESDA TM1 REVIEWER FOR NATIONAL ASSESSMENT WRITTEN AND ORAL QUESTIONS WITH A...
 
A Strategic Approach: GenAI in Education
A Strategic Approach: GenAI in EducationA Strategic Approach: GenAI in Education
A Strategic Approach: GenAI in Education
 
Unit 2- Research Aptitude (UGC NET Paper I).pdf
Unit 2- Research Aptitude (UGC NET Paper I).pdfUnit 2- Research Aptitude (UGC NET Paper I).pdf
Unit 2- Research Aptitude (UGC NET Paper I).pdf
 
The Accursed House by Émile Gaboriau.pptx
The Accursed House by Émile Gaboriau.pptxThe Accursed House by Émile Gaboriau.pptx
The Accursed House by Émile Gaboriau.pptx
 
How to Make a Field invisible in Odoo 17
How to Make a Field invisible in Odoo 17How to Make a Field invisible in Odoo 17
How to Make a Field invisible in Odoo 17
 
Francesca Gottschalk - How can education support child empowerment.pptx
Francesca Gottschalk - How can education support child empowerment.pptxFrancesca Gottschalk - How can education support child empowerment.pptx
Francesca Gottschalk - How can education support child empowerment.pptx
 
Polish students' mobility in the Czech Republic
Polish students' mobility in the Czech RepublicPolish students' mobility in the Czech Republic
Polish students' mobility in the Czech Republic
 
Biological Screening of Herbal Drugs in detailed.
Biological Screening of Herbal Drugs in detailed.Biological Screening of Herbal Drugs in detailed.
Biological Screening of Herbal Drugs in detailed.
 
CACJapan - GROUP Presentation 1- Wk 4.pdf
CACJapan - GROUP Presentation 1- Wk 4.pdfCACJapan - GROUP Presentation 1- Wk 4.pdf
CACJapan - GROUP Presentation 1- Wk 4.pdf
 
Honest Reviews of Tim Han LMA Course Program.pptx
Honest Reviews of Tim Han LMA Course Program.pptxHonest Reviews of Tim Han LMA Course Program.pptx
Honest Reviews of Tim Han LMA Course Program.pptx
 
How libraries can support authors with open access requirements for UKRI fund...
How libraries can support authors with open access requirements for UKRI fund...How libraries can support authors with open access requirements for UKRI fund...
How libraries can support authors with open access requirements for UKRI fund...
 
Unit 8 - Information and Communication Technology (Paper I).pdf
Unit 8 - Information and Communication Technology (Paper I).pdfUnit 8 - Information and Communication Technology (Paper I).pdf
Unit 8 - Information and Communication Technology (Paper I).pdf
 
The basics of sentences session 5pptx.pptx
The basics of sentences session 5pptx.pptxThe basics of sentences session 5pptx.pptx
The basics of sentences session 5pptx.pptx
 
The geography of Taylor Swift - some ideas
The geography of Taylor Swift - some ideasThe geography of Taylor Swift - some ideas
The geography of Taylor Swift - some ideas
 
Chapter 3 - Islamic Banking Products and Services.pptx
Chapter 3 - Islamic Banking Products and Services.pptxChapter 3 - Islamic Banking Products and Services.pptx
Chapter 3 - Islamic Banking Products and Services.pptx
 

Genomics and its application in crop improvement

  • 1. MASTER SEMINAR ON GENOMICS AND ITS APPLICATION IN CROP IMPROVEMENT DATE-24/03/2018 SPEAKER KHEMLATA THAKUR M.Sc. (Ag.) Previous Dept. of Genetics & Plant Breeding CoA, I.G.K.V, Raipur
  • 2. CONTENTS • Meaning of Genomics • Types of Genomics • Classification of Genomics • Genome sequencing • Genes to be Mapped • Genome Mapping in India • Role of Genomics in Crop Improvement • Limitations of Genomics
  • 3. WHAT IS GENOMICS? • Genomics term was given by Thomas Roderick in 1986. • Genomics = the branch of molecular biology concerned with the structure, function, evolution and mapping of genomes. • Genome = the complete set of genes or genetic material present in a cell or organism.
  • 4. Genomics is the sub discipline of genetics devoted to the  mapping,  sequencing ,  and functional analysis of genome  The field includes studies of intra-genomic phenomena such as heterosis, epistasis, pleiotropy and other interactions between loci and alleles within the genome.
  • 6. Main points related to genomics  It is a computer aided study of structure and function of entire genome of an organism.  It deals with mapping and sequencing of genes on the chromosomes.  It is a rapid and accurate method of gene mapping. It is more accurate than recombination mapping and deletion mapping techniques.  The genomic techniques are highly powerful, efficient and effective in solving complex genetic problems.  Now use of genomic techniques has become indispensable in plant breeding and genetics.
  • 8.
  • 9.
  • 10. GENOME SEQUENCING  Genome sequencing is figuring out the order of DNA nucleotides, or bases, in a genome-the order of A, C, G, and T that make up an organism's DNA.  The human genome is made up of over 3 billion of these genetic letters.
  • 11. Why we need to sequence genome ?? • It determines complete genetic information present in the genome. • It provides insights on genome organization and evolution. • It has opened up exciting areas for functional genomics. • It allows to workout the various molecular interactions. • Information like SNPs have become available. • It may provide an understanding of pharmacogenomics. • Better understanding of human genetic disease . • Pathogenicity would be better understood.
  • 12. Methods of gene sequencing 1. Maxam- Gilbert sequencing 2. Chain termination method 3. Pyro-sequencing 4. Nanopore sequencing 5. Clone by clone sequencing 6. Shotgun sequencing
  • 13. ACHIEVEMENTS EVENTS YEAR • Discussion in scientific community for sequencing genome 1984-1990 • Human genome project proposed 1986 • Human genome project initiated Oct .1,1990 • Haemophilu influenzae genome sequenced 1995 • E.coli genome sequenced 1997 • Yeast (Saccharomyces cerevisiae) genome sequenced 1999 • Worm (Caenorhabditis elegans) genome sequenced 1999 • Arabidopsis thaliana(a weed) genome sequenced 2000 • Human genome working draft published (90% genome sequenced) June 26,2001
  • 14. Genome Size and Gene Number in some crop plants CROPS GENOME SIZE(Mb) GENE NO. YEAR REFERENCE 1) Rice (Oryza sativa) 370 40577 2002 Goff, et al., 2) Corn (Zea mays) 2500 >32000 2009 Schnable, P et al. 3) Sorghum (Sorghum bicolor ) 700 34496 2009 Paterson , A et al 4) Wheat (Triticum urartu) 392 - 2013 Ling HQ et al 5) Arabidopsis (Arabidopsis thaliana) 120 27417 2000 - 6) Soybean (Glycine max) 950 46430 2010 Haung, et al. 7) Pigeon pea (Cajanus cajan) 833 48680 2011 Varshney , et al, 8)Potato (Solanum tuberosum) 844 39031 2011 PGS Constorium 9)Flax (Linum usitatissimum) 686 43384 2012 Wang,et al
  • 15. Gene to be mapped  Morphological Characters: It includes highly heritable traits such as shape, size and colour of leaf, flower ,calyx, corolla, etc. It also includes surface of leaf and stem (hairiness and smoothness).  Productivity traits: Such characters differ from species to species.  Resistance Traits: Such characters include resistance to diseases, insects, drought, soil salinity, soil alkalinity, soil acidity, heat, frost, water logging, cold, etc.  Quality Traits: Such traits include nutritional quality, market quality and keeping quality.  Agronomic Traits: Such traits include earliness, plant height, plant type, etc.  Special Characters: Such characters include genes controlling male sterility, self incompatibility, photo and thermo-insensitivity, toxic substances, apomixes, adaptation, etc.
  • 16. Conventional breeding to molecular breeding through Genomic research ?  Through conventional breeding, selection for crop improvement is carried out on phenotypic character, which is the result of genotypic and environmental effects.  The difficulties of phenotype based selection can be overcome by direct selection for genotype using DNA markers that co-segregate with the genes of interest.  Many potential genes that confer resistance have been mapped in economical crops like rice.
  • 17. Contd…..  In conventional breeding normally options of presence of genes can be identified, when expression where comes during adverse condition. By the use of genomic research now we can easily identify the presence or absence of gene in early stage.  By the use of molecular markers exact location of particular gene on chromosome can easily be identified.  Presence of all of the important genes and related markers will be very much helpful to identified and development of new cultivars as we desire - Varietal identification.  Insertion and deletions are desirable or undesirable, easily be possible to identify with the sequencing of genome.
  • 18.
  • 19.
  • 20. Genome Mapping in India: • In India, the functional genome research projects are looked after by the Depart of Biotechnology [DBT] and ICAR. • The DBT has initiated such work on several crops such as rice, wheat, maize, chick pea, banana, tomato, Brassica, etc. • The ICAR has created genome mapping facilities for rice at NRC-PB, IARI, New Delhi. • In India, the genome mapping work is carried out at the following centres. i. National Research Centre for Plant Biotechnology, IARI, New Delhi. ii. International Centre for Genetic Engineering and Biotechnology, New Delhi. iii. Jawahar Lal Nehru University, New Delhi. iv. National Botanical Research Institute, Lucknow.
  • 21. Application of Genomics in Crop Improvement •Genome size •Gene number •Gene mapping •Gene sequencing •Evolution of crop plants •Gene cloning •Identification of DNA markers •Marker assisted selection •Transgenic breeding •Construction of linkage maps •QTL mapping It is useful and provides information about
  • 22. Implementation of genomics in different crops
  • 23.
  • 24.
  • 25.
  • 26.
  • 28. results • An indica variety with small grain size was crossed to a japonica variety with large grain size to construct a set of recombinant inbred lines (RILs) which was used to identify quantitative trait loci (QTLs) controlling eight grain quality traits. • Based on a linkage map of 185 SSR markers, a total of 16 QTLs were mapped on six chromosomes. • A pleiotropic main effect QTL (M-QTL) flanked by RM3204 and RM16 on chromosome 3 influences the grain length (GL), length width ratio (LWR) and head rice ratio (HRR), explaining the phenotypic variation of 46.0, 36.1 and 29.7%, respectively. • A total of 18 epistatic QTLs were identified for all the traits , distributed on all the chromosomes except chromosome 10.
  • 29. GENOMICS STATUS at RRL,IGKV • Almost all the facilities are available for genomics • work on structural genomics, functional genomics, are carried on in RRL • All kind of markers are available in RRL like SSR. RAPD etc. For selection, pyramiding . • Gene mapping ,gene sequencing is done in various crops such as vegetables, oilseeds basically in rice. • Advance euipment’s present in RRL are PCR machine, gel electrophoresis. • ion torrent machine for gene sequencing • Availabilty of Taqman based SNP Genotyping.
  • 30. LIMITATIONS 1. Expensive Technique 2. High technical skill 3. Laborious work 4. Limited genes Available 5. Lack of proper markers
  • 31. CONCLUSION . • Marker technology has rapidly exerted influence in plant breeding due to advances in genomics. • Functional markers have contributed to diagnostics technology that enable identification of molecules or sequences that contribute or participate during plant response to various stresses. • This has enabled designing of better crop/plant varieties. • The future of food security depends on availability of funding to improve agricultural practises for millions of people in developing countries who depend on it as a source of income and to ensure the worlds poor are foods secure.