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Finding cancerous anaplastic
cells with image analysis
K. Nicol, M. Plaskow, T. Barr,
D. Billiter
Anaplasia
– refers to a reversion of differentiation in cells
and is characteristic of malignant
neoplasms/tumors
– literally means "to form backward"
It implies dedifferentiation, or loss of structural and
functional differentiation of normal cells
– Anaplasia is the most extreme disturbance in
cell growth encountered in the spectrum of
cellular proliferations
Anaplastic cells display marked pleomorphism
– The nuclei are characteristically extremely
hyperchromatic and large.
They may approach 1:1 instead of the normal 1:4 or 1:6
Anaplastic nuclei are variable and bizarre in size and shape
– The chromatin is coarse and clumped, and nucleoli may be of
astounding size
– With / without large atypical mitotic figures
– Giant cells that are considerably larger than their
neighbors may be formed and possess either one
enormous nucleus or several nuclei
Forms of Anaplasia
– Focal
Wilms
– Anaplastic cells confined to a sharply localized area within
the primary tumor
Rhabdomyosarcoma (RMS)
– Anaplastic cells scattered among nonanaplastic cells
– Diffuse
Wilms
– Non-localized anaplasia, or anaplasia noted beyond the
tumor capsule, or present in a biopsy specimen
RMS
– Anaplastic cells in clusters or continuous sheets
Significance of anaplasia
– Wilms tumor
Recognized as the only unfavorable histological
feature of this tumor
– Prognostically significant if anaplasia is seen in
extrarenal tumor sites
lower relapse-free survival rate
– Chemotherapy regimens are augmented if anaplasia is
seen
– Medulloblastoma
Younger age at diagnosis
Greater risk of extracranial metastasis
Lower survival
– Rhabdomyosarcoma
Significant association with anaplasia and clinical
outcome in Embryonal RMS
Older age at diagnosis with larger tumors
Utilization of image analysis to advance
cancer research
– The application was built using Microsoft
technologies
Visual Basic 6.0
Visual Basic .NET
C++.NET
SQLServer 2000-2005.
Our Review
– Identified cases of Wilms tumor and
Rhabdomyosarcoma having evidence of
anaplasia
– Scanned the slides using Aperio® scanscope
– Construct algorithms to analyze cellular
characteristics of the tissue on the slide
Anaplastic nuclei were detected by:
– ran many trials to determine constant pixel
characteristics to define the nuclei of cells on
the slide
– measured the nuclei based on total pixels of
area
– Compared the nuclear “size” within the tissue
section
– highlighted and “stored” the location of all
“suspect” nuclei on the tissue section
Pathologists are able
to set a custom
sensitivity for the
algorithm, which
effects the area
comparison between a
nucleus and all of the
others within the field
on tissue section.
Results:
– It currently takes the anaplasia algorithm 40
minutes to process an entire slide.
Slide specimens scanned in to high quality.
– TIF images (Tagged Image File) average from
80,000 to 150,000 pixels in width and 50,000 to
130,000 pixels in height, totaling 3 to 10 billion
pixels per slide specimen.
Using this method, 87% of all anaplastic
nuclei analyzed were located, counted,
and highlighted for the pathologist/
reviewer.
Conclusion
– Pathologists are able to get electronic decision
support in rapidly finding certain features for
malignant tumors
– The association and utilization of a high
performance computing environment within
cancer research will enhance detection and
optimize the pathology review process thus
allowing for rapid and specific patient therapy.
Thank You

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Finding cancerous anaplastic cells with image analysis

  • 1. Finding cancerous anaplastic cells with image analysis K. Nicol, M. Plaskow, T. Barr, D. Billiter
  • 2. Anaplasia – refers to a reversion of differentiation in cells and is characteristic of malignant neoplasms/tumors – literally means "to form backward" It implies dedifferentiation, or loss of structural and functional differentiation of normal cells – Anaplasia is the most extreme disturbance in cell growth encountered in the spectrum of cellular proliferations
  • 3. Anaplastic cells display marked pleomorphism – The nuclei are characteristically extremely hyperchromatic and large. They may approach 1:1 instead of the normal 1:4 or 1:6 Anaplastic nuclei are variable and bizarre in size and shape – The chromatin is coarse and clumped, and nucleoli may be of astounding size – With / without large atypical mitotic figures – Giant cells that are considerably larger than their neighbors may be formed and possess either one enormous nucleus or several nuclei
  • 4.
  • 5. Forms of Anaplasia – Focal Wilms – Anaplastic cells confined to a sharply localized area within the primary tumor Rhabdomyosarcoma (RMS) – Anaplastic cells scattered among nonanaplastic cells – Diffuse Wilms – Non-localized anaplasia, or anaplasia noted beyond the tumor capsule, or present in a biopsy specimen RMS – Anaplastic cells in clusters or continuous sheets
  • 6. Significance of anaplasia – Wilms tumor Recognized as the only unfavorable histological feature of this tumor – Prognostically significant if anaplasia is seen in extrarenal tumor sites lower relapse-free survival rate – Chemotherapy regimens are augmented if anaplasia is seen
  • 7. – Medulloblastoma Younger age at diagnosis Greater risk of extracranial metastasis Lower survival – Rhabdomyosarcoma Significant association with anaplasia and clinical outcome in Embryonal RMS Older age at diagnosis with larger tumors
  • 8. Utilization of image analysis to advance cancer research – The application was built using Microsoft technologies Visual Basic 6.0 Visual Basic .NET C++.NET SQLServer 2000-2005.
  • 9. Our Review – Identified cases of Wilms tumor and Rhabdomyosarcoma having evidence of anaplasia – Scanned the slides using Aperio® scanscope – Construct algorithms to analyze cellular characteristics of the tissue on the slide
  • 10.
  • 11.
  • 12. Anaplastic nuclei were detected by: – ran many trials to determine constant pixel characteristics to define the nuclei of cells on the slide – measured the nuclei based on total pixels of area – Compared the nuclear “size” within the tissue section – highlighted and “stored” the location of all “suspect” nuclei on the tissue section
  • 13.
  • 14. Pathologists are able to set a custom sensitivity for the algorithm, which effects the area comparison between a nucleus and all of the others within the field on tissue section.
  • 15.
  • 16.
  • 17. Results: – It currently takes the anaplasia algorithm 40 minutes to process an entire slide. Slide specimens scanned in to high quality. – TIF images (Tagged Image File) average from 80,000 to 150,000 pixels in width and 50,000 to 130,000 pixels in height, totaling 3 to 10 billion pixels per slide specimen.
  • 18. Using this method, 87% of all anaplastic nuclei analyzed were located, counted, and highlighted for the pathologist/ reviewer.
  • 19. Conclusion – Pathologists are able to get electronic decision support in rapidly finding certain features for malignant tumors – The association and utilization of a high performance computing environment within cancer research will enhance detection and optimize the pathology review process thus allowing for rapid and specific patient therapy.