K.K.Gupta
Associate Professor
Department of Zoology
VBU
• Retrieval of huge and ever increasing
database is one of the important task for users
in bioinformatics
• Retrieval is the method of searching /recovery
/procure /obtain the desired database
ENTREZ is a search engine to
retrieve the desired Molecular
Biology database
• It is a molecular biology database and retrieval system
• Developed by NCBI
• Also known as an integrated database and its cross-referenced
• It is an entry point for exploring distinct but integrated data bases.
• Easy to uses and is highly convenient
• User don’t have to visit multiple database as it displays all the
links of information on single web page
• It allows text based search for a wide variety of data , such as
annotated genetic sequence information , citations , abstract full
papers
• It uses Boolean operator
• Websites -
www.ncbi.nlm.nih.gov/Entrez
• Entrez covers over 20 databases including the
complete protein sequence data from PIR-
International, PRF, Swiss-Prot, and PDB and
nucleotide sequence data from GenBank that
includes information from EMBL and DDBJ.
• Results may be viewed in various formats
inlcuding FlatFile, FASTA, XML, and others
A graphical interface provides easy visualization of complete
genomes or chromosomes, as well as biological annotation on
individual sequences.
Entrez also allows Batch downloads of large search results.
PROTOCOL
1
• Open goggle /chrome
• Type -Entrez /
2
• Select Entrez from upper panel
• Type any biological gene or protein
3
• Click search
1 2
3
4
ENTREZ.ppt

ENTREZ.ppt

  • 1.
  • 2.
    • Retrieval ofhuge and ever increasing database is one of the important task for users in bioinformatics • Retrieval is the method of searching /recovery /procure /obtain the desired database ENTREZ is a search engine to retrieve the desired Molecular Biology database
  • 3.
    • It isa molecular biology database and retrieval system • Developed by NCBI • Also known as an integrated database and its cross-referenced • It is an entry point for exploring distinct but integrated data bases. • Easy to uses and is highly convenient • User don’t have to visit multiple database as it displays all the links of information on single web page • It allows text based search for a wide variety of data , such as annotated genetic sequence information , citations , abstract full papers • It uses Boolean operator • Websites - www.ncbi.nlm.nih.gov/Entrez
  • 4.
    • Entrez coversover 20 databases including the complete protein sequence data from PIR- International, PRF, Swiss-Prot, and PDB and nucleotide sequence data from GenBank that includes information from EMBL and DDBJ. • Results may be viewed in various formats inlcuding FlatFile, FASTA, XML, and others A graphical interface provides easy visualization of complete genomes or chromosomes, as well as biological annotation on individual sequences. Entrez also allows Batch downloads of large search results.
  • 7.
    PROTOCOL 1 • Open goggle/chrome • Type -Entrez / 2 • Select Entrez from upper panel • Type any biological gene or protein 3 • Click search
  • 8.