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Chapter 3

Proteins, Carbohydrates,
       and Lipids
Macromolecules
Polymers with molecular weights >1,000

Made up of smaller molecules called
monomers

Four Main Groups:
  Proteins (Amino Acids)
  Carbohydrates (Simple Sugars)
  Lipids (Fatty Acids)
  Nucleic Acids (Nucleotides - Chapter 4)
Functional
     Groups


Groups of atoms with
specific chemical
properties and consistent
behavior
Isomers
Molecules with the same chemical formula, but
atoms are arranged differently

Structural Isomers: differ in how their atoms
are joined together
Optical Isomers
Occur when a carbon
atom has four
different atoms or
groups of atoms
attached to it.

Optical isomers result
from asymmetrical
carbons.
Macromolecules Found in
     Living Tissues
Functions of Macromolecules
• Energy Storage         • Maintenance and
• Structural Support       Homeostasis
• Catalysts              • Movement
• Transport              • Growth
• Protection and         • Development
  Defense                • Heredity
• Regulation of          • Information Storage
  Metabolic Activities
Condensation Reactions
Polymers are formed in
condensation reactions.


Monomers are joined by
covalent bonds.


A water is removed; so
they are also called
dehydration reactions.
Hydrolysis Reactions


Polymers are broken
down into monomers
in hydrolysis
reactions.
Protein Structure
Proteins are polymers of 20 different amino acids.


Polypeptide chain: single, unbranched chain of amino
acids.


The chains are folded into specific three dimensional
shapes defined by the sequence of the amino acids.


Proteins can consist of more than one type of
polypeptide chain.
Functions of Proteins
enzymes—catalytic proteins
defensive proteins (e.g., antibodies)
hormonal and regulatory proteins—control physiological
processes
receptor proteins—receive and respond to molecular signals
Storage proteins store amino acids.
Structural proteins provide physical stability and movement.
Transport proteins carry substances within the organism (e.g.,
hemoglobin).
Genetic regulatory proteins regulate when, how, and to what
extent a gene is expressed.
Building Blocks of Proteins:
        Amino Acids
α-carbon is “asymmetric”

4 Main Groups
• Amino Group
• Carboxyl Group
• Hydrogen
• Side Chain (R)
  –Specific to each type of
  amino acid                  D-amino acids (dextro, “right”)

                              L-amino acids (levo, “left”)
•Optical Isomers              (this form is found in organisms)
Types of Amino Acid Side Chains (R)




These hydrophylic amino acids attract
ions of opposite charges.
Types of Amino Acid Side Chains (R)




Hydrophylic amino acids with polar but
uncharged side chains form hydrogen bonds.
Types of Amino Acid Side Chains (R)




Hydrophobic amino acids
Types of Amino Acid Side Chains (R)




Cysteine: Can form disulfide bridges
Glycine: Smallest a.a. (Unique why?)
Proline: Causes “kinks” in protein structure
Peptide Bonds




N-terminus: start of a polypeptide chain
C-terminus: end of a polypeptide chain
Levels of Protein Structure:
     Primary Structure
Made up of a single chain of amino acids
bound together (polypeptide)




The number of different proteins that can
be made from 20 amino acids is
enormous!
Levels of Protein Structure:
     Secondary Structure
α helix: right-handed coil
   resulting from
   hydrogen bonding
   between N—H groups
   on one amino acid and
   C=O groups on
   another.


β pleated sheet: two or
   more polypeptide
   chains are aligned;
   hydrogen bonds from
   between the chains.

           Bonds do NOT form between side chains!
Levels of Protein Structure:
      Tertiary Structure
• Bending and
  folding results in a
  macromolecule
  with specific three-
  dimensional
  shape.

• Bonds form
  between side
  chains
Levels of Protein Structure:
     Quaternary Structure
Results from the
interaction of subunits
by hydrophobic
interactions, van der
Waals forces, ionic
bonds, and hydrogen
bonds.


Each subunit has its
own unique tertiary
structure.
Environmental Conditions
    affect Protein Folding
Conditions that affect secondary and
 tertiary structure:
• High temperature
• pH changes
• High concentrations of polar molecules
• Nonpolar substances
Denaturation
Chaperones
Help some proteins fold correctly
Carbohydrates
Carbohydrates have the general formula
Cn(H2O)n


Source of stored energy
Transport stored energy
Types of Carbohydrates
Monosaccharides: simple sugars
Disaccharides: two simple sugars linked
 by covalent bonds
Oligosaccharides: three to 20
 monosaccharides
Polysaccharides: hundreds or thousands
 of monosaccharides—starch,
 glycogen, cellulose
Monosaccharides
Simple Sugars
Hexoses: six
Pentoses: five carbons
Glyceraldehyde: three
  carbons
Monosaccharides: Glucose
All cells use glucose (monosaccharide) as an
  energy source.
Exists as a straight chain or ring form. Ring is
  more common—it is more stable.
Glycosidic Linkages
Monosaccharides bind together in
 condensation reactions to form glycosidic
 linkages.
Glycosidic linkages can be α or β.
Oligosaccharides
Often covalently bonded to proteins and
 lipids on cell surfaces and act as
 recognition signals.
Human blood groups get specificity from
 oligosaccharide chains.
Polysaccharides
Giant polymers of monosaccharides.
 Starch: storage of glucose in plants
 Glycogen: storage of glucose in animals
 Cellulose: very stable, good for structural
 components
Carbohydrates can be modified by the addition
            of functional groups
Lipids
Nonpolar hydrocarbons
Not polymers in the strict sense, because they are not
  covalently bonded.


FUNCTION:
1) Fats and oils store energy
2) Phospholipids—structural role in cell membranes
3) Carotenoids and chlorophylls—capture light energy in plants
4) Steroids and modified fatty acids—hormones and vitamins
5) Animal fat—thermal insulation
6) Lipid coating around nerves provides electrical insulation
7) Oil and wax on skin, fur, and feathers repels water
Triglycerides
Simple fats and oils


Glycerol: 3 —OH groups (an alcohol)
Fatty acid: nonpolar hydrocarbon with a polar
carboxyl group
Carboxyls bond with hydroxyls of glycerol in an
ester linkage. (condensation reaction)
Ester Linkage
Types of Fatty Acids
Saturated fatty acids: no double bonds
 between carbons—it is saturated with
 H atoms.
Unsaturated fatty acids: some double
 bonds in carbon chain.
    monounsaturated: one double bond
    polyunsaturated: more than one
Types of Fatty Acids
Saturated        Unsaturated
Phospholipids
Fatty acids bound to
glycerol; a phosphate
group replaces one fatty
acid.


Hydrophilic “head”
Hydrophobic “Tails”


Amphipathic:
Have opposing chemical
properties
Phospholipid Bilayer
• In water, phospholipids line up with the
  hydrophobic “tails” together and the
  phosphate “heads” facing outward, to form a
  bilayer.
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Chapter 3

  • 2. Macromolecules Polymers with molecular weights >1,000 Made up of smaller molecules called monomers Four Main Groups: Proteins (Amino Acids) Carbohydrates (Simple Sugars) Lipids (Fatty Acids) Nucleic Acids (Nucleotides - Chapter 4)
  • 3. Functional Groups Groups of atoms with specific chemical properties and consistent behavior
  • 4. Isomers Molecules with the same chemical formula, but atoms are arranged differently Structural Isomers: differ in how their atoms are joined together
  • 5. Optical Isomers Occur when a carbon atom has four different atoms or groups of atoms attached to it. Optical isomers result from asymmetrical carbons.
  • 6. Macromolecules Found in Living Tissues
  • 7. Functions of Macromolecules • Energy Storage • Maintenance and • Structural Support Homeostasis • Catalysts • Movement • Transport • Growth • Protection and • Development Defense • Heredity • Regulation of • Information Storage Metabolic Activities
  • 8. Condensation Reactions Polymers are formed in condensation reactions. Monomers are joined by covalent bonds. A water is removed; so they are also called dehydration reactions.
  • 9. Hydrolysis Reactions Polymers are broken down into monomers in hydrolysis reactions.
  • 10. Protein Structure Proteins are polymers of 20 different amino acids. Polypeptide chain: single, unbranched chain of amino acids. The chains are folded into specific three dimensional shapes defined by the sequence of the amino acids. Proteins can consist of more than one type of polypeptide chain.
  • 11. Functions of Proteins enzymes—catalytic proteins defensive proteins (e.g., antibodies) hormonal and regulatory proteins—control physiological processes receptor proteins—receive and respond to molecular signals Storage proteins store amino acids. Structural proteins provide physical stability and movement. Transport proteins carry substances within the organism (e.g., hemoglobin). Genetic regulatory proteins regulate when, how, and to what extent a gene is expressed.
  • 12. Building Blocks of Proteins: Amino Acids α-carbon is “asymmetric” 4 Main Groups • Amino Group • Carboxyl Group • Hydrogen • Side Chain (R) –Specific to each type of amino acid D-amino acids (dextro, “right”) L-amino acids (levo, “left”) •Optical Isomers (this form is found in organisms)
  • 13. Types of Amino Acid Side Chains (R) These hydrophylic amino acids attract ions of opposite charges.
  • 14. Types of Amino Acid Side Chains (R) Hydrophylic amino acids with polar but uncharged side chains form hydrogen bonds.
  • 15. Types of Amino Acid Side Chains (R) Hydrophobic amino acids
  • 16. Types of Amino Acid Side Chains (R) Cysteine: Can form disulfide bridges Glycine: Smallest a.a. (Unique why?) Proline: Causes “kinks” in protein structure
  • 17. Peptide Bonds N-terminus: start of a polypeptide chain C-terminus: end of a polypeptide chain
  • 18. Levels of Protein Structure: Primary Structure Made up of a single chain of amino acids bound together (polypeptide) The number of different proteins that can be made from 20 amino acids is enormous!
  • 19. Levels of Protein Structure: Secondary Structure α helix: right-handed coil resulting from hydrogen bonding between N—H groups on one amino acid and C=O groups on another. β pleated sheet: two or more polypeptide chains are aligned; hydrogen bonds from between the chains. Bonds do NOT form between side chains!
  • 20. Levels of Protein Structure: Tertiary Structure • Bending and folding results in a macromolecule with specific three- dimensional shape. • Bonds form between side chains
  • 21. Levels of Protein Structure: Quaternary Structure Results from the interaction of subunits by hydrophobic interactions, van der Waals forces, ionic bonds, and hydrogen bonds. Each subunit has its own unique tertiary structure.
  • 22. Environmental Conditions affect Protein Folding Conditions that affect secondary and tertiary structure: • High temperature • pH changes • High concentrations of polar molecules • Nonpolar substances
  • 25. Carbohydrates Carbohydrates have the general formula Cn(H2O)n Source of stored energy Transport stored energy
  • 26. Types of Carbohydrates Monosaccharides: simple sugars Disaccharides: two simple sugars linked by covalent bonds Oligosaccharides: three to 20 monosaccharides Polysaccharides: hundreds or thousands of monosaccharides—starch, glycogen, cellulose
  • 27. Monosaccharides Simple Sugars Hexoses: six Pentoses: five carbons Glyceraldehyde: three carbons
  • 28. Monosaccharides: Glucose All cells use glucose (monosaccharide) as an energy source. Exists as a straight chain or ring form. Ring is more common—it is more stable.
  • 29. Glycosidic Linkages Monosaccharides bind together in condensation reactions to form glycosidic linkages. Glycosidic linkages can be α or β.
  • 30. Oligosaccharides Often covalently bonded to proteins and lipids on cell surfaces and act as recognition signals. Human blood groups get specificity from oligosaccharide chains.
  • 31. Polysaccharides Giant polymers of monosaccharides. Starch: storage of glucose in plants Glycogen: storage of glucose in animals Cellulose: very stable, good for structural components
  • 32. Carbohydrates can be modified by the addition of functional groups
  • 33. Lipids Nonpolar hydrocarbons Not polymers in the strict sense, because they are not covalently bonded. FUNCTION: 1) Fats and oils store energy 2) Phospholipids—structural role in cell membranes 3) Carotenoids and chlorophylls—capture light energy in plants 4) Steroids and modified fatty acids—hormones and vitamins 5) Animal fat—thermal insulation 6) Lipid coating around nerves provides electrical insulation 7) Oil and wax on skin, fur, and feathers repels water
  • 34. Triglycerides Simple fats and oils Glycerol: 3 —OH groups (an alcohol) Fatty acid: nonpolar hydrocarbon with a polar carboxyl group Carboxyls bond with hydroxyls of glycerol in an ester linkage. (condensation reaction)
  • 36. Types of Fatty Acids Saturated fatty acids: no double bonds between carbons—it is saturated with H atoms. Unsaturated fatty acids: some double bonds in carbon chain. monounsaturated: one double bond polyunsaturated: more than one
  • 37. Types of Fatty Acids Saturated Unsaturated
  • 38. Phospholipids Fatty acids bound to glycerol; a phosphate group replaces one fatty acid. Hydrophilic “head” Hydrophobic “Tails” Amphipathic: Have opposing chemical properties
  • 39. Phospholipid Bilayer • In water, phospholipids line up with the hydrophobic “tails” together and the phosphate “heads” facing outward, to form a bilayer.