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Molecules of Life Chapter 2  Part 2
2.6 Organic Molecules ,[object Object],[object Object],[object Object]
Some Elemental Abundances
Modeling an Organic Molecule
Building Organic Molecules ,[object Object],[object Object]
From Structure to Function ,[object Object],[object Object],[object Object]
Monomers and Polymers  ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Condensation and Hydrolysis ,[object Object],[object Object],[object Object],[object Object]
Condensation and Hydrolysis
Animation: Condensation and hydrolysis
Animation: Functional groups
2.7 Carbohydrates ,[object Object],[object Object],[object Object]
Complex Carbohydrates ,[object Object],[object Object],[object Object],[object Object],[object Object]
Some Complex Carbohydrates
Fig. 2-13 (center), p. 31
Fig. 2-13a, p. 31
Fig. 2-13b, p. 31
Fig. 2-13c, p. 31
Animation: Structure of starch and cellulose
Animation: Examples of monosaccharides
2.8 Lipids ,[object Object],[object Object],[object Object],[object Object],[object Object]
Fats ,[object Object],[object Object],[object Object],[object Object],[object Object]
Saturated and Unsaturated Fats ,[object Object],[object Object],[object Object],[object Object],[object Object]
Fatty Acids ,[object Object]
Fig. 2-14, p. 32 carboxyl group long carbon chain cis  double bond trans  double bond A  stearic acid B  linolenic acid C  oleic acid D  elaidic acid
Phospholipids ,[object Object],[object Object],[object Object]
Phospholipids
Fig. 2-15, p. 32 hydrophilic head two hydrophobic tails A one layer of lipids one layer of lipids B  a lipid bilayer
Fig. 2-15b, p. 32 one layer of lipids one layer of lipids B  a lipid bilayer
Waxes ,[object Object],[object Object],[object Object]
Steroids ,[object Object],[object Object],[object Object]
Steroids
Animation: Fatty acids
Animation: Triglyceride formation
Animation: Phospholipid structure
Animation: Cholesterol
2.9 Proteins ,[object Object],[object Object],[object Object]
Amino Acid ,[object Object],[object Object]
Peptide Bonds ,[object Object],[object Object],[object Object],[object Object],[object Object]
Polypeptide Formation
Fig. 2-17, p. 34 methionine methionine —serine serine
Animation: Peptide bond formation
Protein Synthesis ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Protein Synthesis ,[object Object],[object Object],[object Object],[object Object],[object Object]
Protein Structure
Fig. 2-18, p. 35 lysine glycine glycine arginine 1 2 3 4 5
Fig. 2-18, p. 35 Stepped Art 5 5) Many proteins aggregate by the thousands into larger structures, such as the keratin filaments that make up hair. 2 2) Secondary structure arises when a polypeptide chain twists into a coil (helix) or sheet held in place by hydrogen bonds between different parts of the molecule. The same patterns of secondary structure occur in many different proteins. 3 3) Tertiary structure occurs when a chain’s coils and sheets fold up into a functional domain such as a barrel or pocket. In this example, the coils of a globin chain form a pocket. 4 4) Some proteins have quaternary structure, in which two or more polypeptide chains associate as one molecule. Hemoglobin, shown here, consists of four globin chains (green and blue). Each globin pocket now holds a heme group (red). lysine glycine glycine arginine 1 1) A protein’s primary structure consists of a linear sequence of amino acids (a polypeptide chain).
Animation: Secondary and tertiary structure
The Importance of Protein Structure ,[object Object],[object Object],[object Object]
Misfolded Proteins: Prion Disease ,[object Object],[object Object],[object Object],[object Object]
Variant Creutzfeldt-Jakob Disease (vCJD)
Fig. 2-19a, p. 36
Fig. 2-19a, p. 36 Conformational change ? PrP C  protein prion protein
Animation: Structure of an amino acid
Animation: Molecular models of the protein hemoglobin
Animation: Globin and hemoglobin structure
2.10 Nucleic Acids ,[object Object],[object Object],[object Object],[object Object],[object Object]
ATP ,[object Object],[object Object],[object Object],[object Object]
Functions of DNA and RNA ,[object Object],[object Object]
DNA and RNA ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
A Nucleotide and Nucleic Acid
Fig. 2-20a, p. 37
Fig. 2-20a, p. 37 3 phosphate groups base: adenine (A) sugar: ribose
Fig. 2-20b, p. 37
Animation: Structure of ATP
Animation: Subunits of DNA
2.11  Impacts/Issues  Revisited ,[object Object]
Digging Into Data: Effects of Fats on Lipoprotein Levels
Fig. 2-21, p. 39 protein lipid Main Dietary Fats cis -fatty acids trans -fatty acids saturated fats optimal level an HDL particle LDL 103 117 121 <100 HDL 55 48 55 >40 ratio 1.87 2.44 2.2 <2

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Chapter2 part2

Editor's Notes

  1. Figure 2.13 Three of the most common complex carbohydrates and their locations in a few organisms. Each polysaccharide consists only of glucose units, but different bonding patterns that link the subunits result in substances with very different properties.
  2. Figure 2.13 Three of the most common complex carbohydrates and their locations in a few organisms. Each polysaccharide consists only of glucose units, but different bonding patterns that link the subunits result in substances with very different properties.
  3. Figure 2.13 Three of the most common complex carbohydrates and their locations in a few organisms. Each polysaccharide consists only of glucose units, but different bonding patterns that link the subunits result in substances with very different properties.
  4. Figure 2.13 Three of the most common complex carbohydrates and their locations in a few organisms. Each polysaccharide consists only of glucose units, but different bonding patterns that link the subunits result in substances with very different properties.
  5. Figure 2.14 Fatty acids. (A) The backbone of stearic acid is fully saturated with hydrogen atoms. (B) The backbone of linolenic acid, with three double bonds, is unsaturated. The first double bond occurs at the third carbon from the end, so linoleic acid is called an omega-3 fatty acid. Omega-3 and omega-6 fatty acids are “essential fatty acids.” Your body does not make them, so they must come from food. The only difference between oleic acid (C) , a cis fatty acid, and elaidic acid (D) , a trans fatty acid, is the arrangement of hydrogens around the one double bond in the backbone.
  6. Figure 2.15 Phospholipids. (A) Each phospholipid has a hydrophilic head and two hydrophobic tails. (B) A double layer of phospholipids is the structural foundation of all cell membranes.
  7. Figure 2.15 Phospholipids. (A) Each phospholipid has a hydrophilic head and two hydrophobic tails. (B) A double layer of phospholipids is the structural foundation of all cell membranes.
  8. Figure 2.17 : Animated! Polypeptide formation. Chapter 7 returns to protein synthesis. (A) Two amino acids (here, methionine and serine) are joined by condensation. A peptide bond forms between the carboxyl group of the methionine and the amine group of the serine. (B) Peptide bonds join additional amino acids to the carboxyl end of the chain. The resulting polypeptide can be thousands of amino acids long.
  9. Figure 2.18 : Animated! Protein structure. 1 A protein’s primary structure consists of a linear sequence of amino acids (a polypeptide chain). 2 Secondary structure arises when a polypeptide chain twists into a coil (helix) or sheet held in place by hydrogen bonds between different parts of the molecule. The same patterns of secondary structure occur in many different proteins. 3 Tertiary structure occurs when a chain’s coils and sheets fold up into a functional domain such as a barrel or pocket. In this example, the coils of a globin chain form a pocket. 4 Some proteins have quaternary structure, in which two or more polypeptide chains associate as one molecule. Hemoglobin, shown here, consists of four globin chains ( green and blue ). Each globin pocket now holds a heme group ( red ). 5 Many proteins aggregate by the thousands into larger structures, such as the keratin filaments that make up hair.
  10. Figure 2.18 : Animated! Protein structure. 1 A protein’s primary structure consists of a linear sequence of amino acids (a polypeptide chain). 2 Secondary structure arises when a polypeptide chain twists into a coil (helix) or sheet held in place by hydrogen bonds between different parts of the molecule. The same patterns of secondary structure occur in many different proteins. 3 Tertiary structure occurs when a chain’s coils and sheets fold up into a functional domain such as a barrel or pocket. In this example, the coils of a globin chain form a pocket. 4 Some proteins have quaternary structure, in which two or more polypeptide chains associate as one molecule. Hemoglobin, shown here, consists of four globin chains ( green and blue ). Each globin pocket now holds a heme group ( red ). 5 Many proteins aggregate by the thousands into larger structures, such as the keratin filaments that make up hair.
  11. Figure 2.19 Variant Creutzfeldt–Jakob disease (vCJD). (A) The PrPC protein becomes a prion when it misfolds into an as-yet unknown conformation. Prions cause other PrPC proteins to misfold, and the misfolded proteins aggregate into long fibers. (B) Slice of brain tissue from a person with vCJD. Characteristic holes and prion protein fibers radiating from several deposits are visible. (C) Charlene Singh, here being cared for by her mother, was one of three people who developed symptoms of the disease while living in the United States. Like the others, Singh most likely contracted the disease elsewhere; she spent her childhood in Britain. She was diagnosed in 2001, and she died in 2004.
  12. Figure 2.19 Variant Creutzfeldt–Jakob disease (vCJD). (A) The PrPC protein becomes a prion when it misfolds into an as-yet unknown conformation. Prions cause other PrPC proteins to misfold, and the misfolded proteins aggregate into long fibers. (B) Slice of brain tissue from a person with vCJD. Characteristic holes and prion protein fibers radiating from several deposits are visible. (C) Charlene Singh, here being cared for by her mother, was one of three people who developed symptoms of the disease while living in the United States. Like the others, Singh most likely contracted the disease elsewhere; she spent her childhood in Britain. She was diagnosed in 2001, and she died in 2004.
  13. Figure 2.20 : Animated! A nucleotide and a nucleic acid. (A) The nucleotide ATP. (B) DNA consists of two chains of nucleotides, twisted into a double helix held together by hydrogen bonds.
  14. Figure 2.20 : Animated! A nucleotide and a nucleic acid. (A) The nucleotide ATP. (B) DNA consists of two chains of nucleotides, twisted into a double helix held together by hydrogen bonds.
  15. Figure 2.20 : Animated! A nucleotide and a nucleic acid. (A) The nucleotide ATP. (B) DNA consists of two chains of nucleotides, twisted into a double helix held together by hydrogen bonds.
  16. Figure 2.21 Effect of diet on lipoprotein levels. Researchers placed 59 men and women on a diet in which 10 percent of their daily energy intake consisted of cis fatty acids, trans fatty acids, or saturated fats. Blood LDL and HDL levels were measured after three weeks on the diet; averaged results are shown in mg/dL (milligrams per deciliter of blood). All subjects were tested on each of the diets. The ratio of LDL to HDL is also shown.