The Structure & Function ofThe Structure & Function of
MacromoleculesMacromolecules
Your Goal
 Name the monomers of the 4
macromolecules
 Explain how those monomers are
joined into polymers
 Describe the uses of each
macromolecule in living things
MacromoleculesMacromolecules
Macromolecules are giant
molecules made up of many small
organic molecules joined together
This is
analogous to
links joined
together to
make a chain
Most Macromolecules areMost Macromolecules are
PolymersPolymers Built fromBuilt from MonomersMonomers
Pectin is an
example of a
polymer. It is
made up of
repeating units
of pectic acid
and pectinic
acid. These acid
rings, then, are
the monomers
that link together
to form pectin.
Polymer
Each ring,
or link, in
the chain is
a monomer
The Synthesis of PolymersThe Synthesis of Polymers
In order to covalently bond, the 2 monomers
lose –H & -OH atoms which combine to form
water as a bi-product. Thus this reaction is
known as dehydration synthesis The process
is then repeated many times to synthesize a
large polymer.
Note: Some texts may refer to this as a condensation reaction
……And the Breakdown ofAnd the Breakdown of
PolymersPolymers
The reverse reaction for a dehydration
synthesis is hydrolysis. A water molecule
is used to break, or lyse, the covalent bond
between two monomers. When the bonds
are broken, energy is released.
When one organism eats another,
macromolecules are broken down
& their monomers can be reused
and/or rearranged to make new
polymers with different functions.
Polymer DiversityPolymer Diversity
Variations among organisms is primarily a result of molecular
differences; namely in their DNA & protein
Although there’s a HUGE variety of polymers, but only 40-50
monomers exist!
**The variety results from the order of a sequence of
monomers. As a simple example, 4 monomers can be ordered
in several configurations to yield polymers that have different
structures and functions.
STOP
POTS
TOPS
It’s sort of like letters of the
alphabet; different
arrangements of the same
letters form different words
with very different meanings
Quick Think with your food
buddy
 Draw a monomer and a polymer
Four BiologicalFour Biological
MacromoleculesMacromolecules
Carbohydrates Serve asCarbohydrates Serve as
Fuel & Building MaterialFuel & Building Material
Carbohydrates are sugars
& starches
There are 3 levels of
carbohydrate complexity:
Monosaccharides
Disaccharides
Polysaccharides
(Mono means 1, saccharide refers to a sugar)
(Di = 2)
(Poly = Many) Vocab. Tip: Most
sugars end in the
suffix –ose.
Glucose,Maltose,
Lactose, etc
Monosaccharides-simplest of the sugars;
consist of 1 ring
Examples: Glucose & Fructose
Main fuel for cells cellular respiration; used for quick energy.
Monosaccharides that are left unused become linked by
dehydration synthesis to form disaccharides & polysaccharides.
Basic molecular formula = CH2O where there are generally twice
as many H as C or O. Example: glucose C6H12O6
Like other sugars, glucose forms rings in
water
Disaccharides – Consist of two monosaccharides
joined together
Examples: Maltose, Lactose, Sucrose
2 glucose monomers bond to make
maltose, which has different chemical
characteristics than glucose
Name of bond
between C1 & C4
Glucose + Fructose = Sucrose
Polysaccharides- Polymers of 100s to 1,000s of
monosaccharides linked together
Storage polysaccharides:
Polymer
Name
Monomer Location Function
In Plants Starch Glucose Plastids of
cells
Store surplus
glucose
In Animals Glycogen Glucose Liver & muscle
cells
Fuel storage
used when
glucose is
unavailable
Structural Polysaccharides-insoluble & hard to break down
(e.g. dietary fiber):
Example in plants = cellulose
Long, straight chains of
glucose that are H-bonded to
each other at their hydroxyl
groups = microfibrils that form
cell wall
Example in animals = chitin
Monomer is
glucose
with 1
hydroxyl
group
replaced
with an
acetylamino
group
Polysaccharides
Quick Think with your best
thing buddy
 Draw a monosaccharide
 Draw a polysaccharide
 Give one biological use for these
molecules
Lipids are a DiverseLipids are a Diverse GroupGroup
of Hydrophobic Moleculesof Hydrophobic Molecules
Lipids are macromolecules that ARE NOT polymers
Hydro = water
Phobic = fearing
Lipids are mostly hydrocarbons and, therefore, are
hydrophobic
Three biologically important lipids:
1. Fats
2. Phospholipids
3. Steroids
FatsFats
Each molecule is made
of 1 glycerol & 3 fatty
acids
Bonds form by
dehydration synthesis
Carboxyl group =
fatty “acid”
Triacylglycerol
(a.k.a.triglyceride)Saturated fat = no
double bonds between
C in fatty acid chain
Unsaturated fat =
1 or more double
bonds between C in
fatty acid chain
FatsFats
Function = Energy storage
*1 gram of fat stores more than twice as much
energy as 1g of carbohydrate!
*The fat molecules in animals are stored in adipose
cells
-Adipose layers protect organs & insulate
Adipose Cells (40X)
Whale Blubber
PhospholipidsPhospholipids
Made of 1 glycerol & only
2 fatty acidsCharged
phosphate
group
makes the
head
hydrophilic
In water,
phospholipids
arrange into a
bilayer according
to their
hydrophobic &
hydrophilic
regions
Slightly positive H in water
attracts negative phosphate
group in phospholipids
SteroidsSteroids
Steroids have this 4-ringed
basic structure attached to a
functional group
This functional group makes
this molecule cholesterol.
*Cholesterol is a major component of
animal cell membranes
*Many sex hormones are made from
cholesterol
Quick Think with your super
hero buddy
 Why are fats NOT polymers?
 Name one biological use for lipids.
Proteins Have Many Structures,Proteins Have Many Structures,
Resulting in a Wide Range of FunctionsResulting in a Wide Range of Functions
Some protein functions:
Enzymatic proteins- catalyze rxns
Structural proteins- support
Storage Proteins- storage of amino acids
Transport proteins- transport other molecules
Hormonal proteins- regulate organism’s activities
Receptor proteins- allow cells to respond to stimuli
Contractile proteins- movement
Defensive proteins- protection against disease
Hair
Protein in seeds
Hemoglobin
Found in muscle cells
PolypeptidesPolypeptides
•A protein is 1 or more
polypeptides folded & coiled
into a specific shape
•A polypeptide is a
polymer of amino acids
One amino acid monomer
linked to a chain of others.
All of the amino acids
linked together form a
polypeptide chain
Polypeptides:Polypeptides:
Amino Acid MonomersAmino Acid Monomers
R
group
R
group
Leucine Serine
Carboxyl groupAmino group
Variable side group
Each of the 20
different amino
acids has a
different R group
which gives it its
unique
characteristics
Polypeptides:Polypeptides:
Amino Acid PolymersAmino Acid Polymers
Peptide Bond
R
group
R
group
R
group
R
group
Amino
group
Carboxyl
group
N-terminus C-
terminus
Amino Acid chains are
held together by peptide
bonds which are formed
by a dehydration
reaction
The number,
type, &
sequence of
amino acids
determine the
shape and
function of the
polypeptide
Note that both the C & N-terminus
ionize in aqueous solutions
Protein ConformationProtein Conformation
& Function& Function
The function of a protein is an emergent property
resulting from its unique shape
Model of receptor protein Model of enzyme
In each example, the protein’s ability to perform its
function is dependant on the specific shape of the protein
Protein Conformation & Function:Protein Conformation & Function:
Four Levels of Protein StructureFour Levels of Protein Structure
Primary Structure: a protein’s
unique, linear sequence of amino
acids which is determined by
genetic information
Protein Conformation & Function:Protein Conformation & Function:
Four Levels of Protein StructureFour Levels of Protein Structure
Secondary
Structure: the result
of H-bonding
between partially
negative oxygen &
nitrogen of the
polypeptide
backbone and
hydrogen on the
backbone.
Primary
Structure
α-helix structure: coiling that
results from H-bonding
between every 4th
amino acid
β-pleated sheet:
polypeptide backbone
folds on itself, forming
H-bonds
Protein Conformation & Function:Protein Conformation & Function:
Four Levels of Protein StructureFour Levels of Protein Structure
Tertiary
structure: the
overall shape
of the
polypeptide
resulting from
interactions
between R-
groups of
amino acids.
Hydrophobic
interactions
contribute to tertiary
structure:
hydrophobic R-
groups are
organized so that
they are in the
center of the
protein. Hydrophilic
amino acid R-
groups end up on
the outer surface of
the protein.
Note disulfide
bridge
reinforces
protein
conformation
Protein Conformation & Function:Protein Conformation & Function:
Four Levels of Protein StructureFour Levels of Protein Structure
Quaternary
structure:
forms when
two or more
polypeptide
chains
aggregate to
make one
molecule
Protein Conformation & Function:Protein Conformation & Function:
Four Levels of Protein StructureFour Levels of Protein Structure
•A protein’s shape is sensitive to
the surrounding environment
Unfavorable
temperature and pH
changes can cause
a protein to unravel
and lose its shape.
This is called
denaturation
Quick Think with your love
buddy <3
 Draw and label the 4 levels of protein
structure
Nucleic AcidsNucleic Acids Store & TransmitStore & Transmit
Hereditary InformationHereditary Information
•Nucleic acids store the
instructions for building proteins
•Two types: Deoxyribonucleic
Acid (DNA) & Ribonucleic Acid
(RNA)
•The flow of genetic information:
DNA RNA protein
Nucleic Acid StructureNucleic Acid Structure
Nucleic acids
are polymers
of
nucleotides.
Each
nucleotide
has 3 parts:
5-carbon
sugar,
phosphate
group, & a
nitrogenous
base
Nucleic Acid Structure:Nucleic Acid Structure:
Nucleotide MonomersNucleotide Monomers
Nucleotides
can have 1 of
4 different
nitrogenous
bases:
cytosine,
thymine –
uracil in RNA-
(pyrimidines)
or adenine,
guanine
(purines)
Thymine (T) Cytosine (C)
Adenine (A) Guanine (G)
p
u
r
i
n
e
s
p
y
r
i
m
i
d
i
n
e
s
Nucleic Acid Structure:Nucleic Acid Structure:
Nucleotide PolymersNucleotide Polymers
Bond occurs at -OH
on 3’ C of one
nucleotide and the
phosphate group
on the 5’ C of the
other nucleotide
Bond formed is
called a
phosphodiester
bond
This process
creates a sugar-
phosphate
backbone with the
nitrogenous bases
sticking out
The DNA Double HelixThe DNA Double Helix
The two
strands of the
double helix
are
antiparallel,
running in the
5’ 3’
direction
H-Bonds
DNA & Proteins as TapeDNA & Proteins as Tape
Measures of EvolutionMeasures of Evolution
The sequence of nucleotides in DNA and the sequence of
amino acids in proteins can be used to determine
evolutionary relationships…closely related species have
fewer differences in their sequences.
Millionsofyearsago
Amino acid
differences
compared
with human
hemoglobin
Quick Think
 What are the names of the bonds between:
1. Sugars in a polysaccharide
2. Amino acids in a protein
3. Nucleotides in a nucleic acid

AP BIO Ch 5 ppt

  • 1.
    The Structure &Function ofThe Structure & Function of MacromoleculesMacromolecules
  • 2.
    Your Goal  Namethe monomers of the 4 macromolecules  Explain how those monomers are joined into polymers  Describe the uses of each macromolecule in living things
  • 3.
    MacromoleculesMacromolecules Macromolecules are giant moleculesmade up of many small organic molecules joined together This is analogous to links joined together to make a chain
  • 4.
    Most Macromolecules areMostMacromolecules are PolymersPolymers Built fromBuilt from MonomersMonomers Pectin is an example of a polymer. It is made up of repeating units of pectic acid and pectinic acid. These acid rings, then, are the monomers that link together to form pectin. Polymer Each ring, or link, in the chain is a monomer
  • 5.
    The Synthesis ofPolymersThe Synthesis of Polymers In order to covalently bond, the 2 monomers lose –H & -OH atoms which combine to form water as a bi-product. Thus this reaction is known as dehydration synthesis The process is then repeated many times to synthesize a large polymer. Note: Some texts may refer to this as a condensation reaction
  • 6.
    ……And the BreakdownofAnd the Breakdown of PolymersPolymers The reverse reaction for a dehydration synthesis is hydrolysis. A water molecule is used to break, or lyse, the covalent bond between two monomers. When the bonds are broken, energy is released.
  • 7.
    When one organismeats another, macromolecules are broken down & their monomers can be reused and/or rearranged to make new polymers with different functions.
  • 8.
    Polymer DiversityPolymer Diversity Variationsamong organisms is primarily a result of molecular differences; namely in their DNA & protein Although there’s a HUGE variety of polymers, but only 40-50 monomers exist! **The variety results from the order of a sequence of monomers. As a simple example, 4 monomers can be ordered in several configurations to yield polymers that have different structures and functions. STOP POTS TOPS It’s sort of like letters of the alphabet; different arrangements of the same letters form different words with very different meanings
  • 9.
    Quick Think withyour food buddy  Draw a monomer and a polymer
  • 10.
  • 11.
    Carbohydrates Serve asCarbohydratesServe as Fuel & Building MaterialFuel & Building Material Carbohydrates are sugars & starches There are 3 levels of carbohydrate complexity: Monosaccharides Disaccharides Polysaccharides (Mono means 1, saccharide refers to a sugar) (Di = 2) (Poly = Many) Vocab. Tip: Most sugars end in the suffix –ose. Glucose,Maltose, Lactose, etc
  • 12.
    Monosaccharides-simplest of thesugars; consist of 1 ring Examples: Glucose & Fructose Main fuel for cells cellular respiration; used for quick energy. Monosaccharides that are left unused become linked by dehydration synthesis to form disaccharides & polysaccharides. Basic molecular formula = CH2O where there are generally twice as many H as C or O. Example: glucose C6H12O6 Like other sugars, glucose forms rings in water
  • 13.
    Disaccharides – Consistof two monosaccharides joined together Examples: Maltose, Lactose, Sucrose 2 glucose monomers bond to make maltose, which has different chemical characteristics than glucose Name of bond between C1 & C4 Glucose + Fructose = Sucrose
  • 14.
    Polysaccharides- Polymers of100s to 1,000s of monosaccharides linked together Storage polysaccharides: Polymer Name Monomer Location Function In Plants Starch Glucose Plastids of cells Store surplus glucose In Animals Glycogen Glucose Liver & muscle cells Fuel storage used when glucose is unavailable
  • 15.
    Structural Polysaccharides-insoluble &hard to break down (e.g. dietary fiber): Example in plants = cellulose Long, straight chains of glucose that are H-bonded to each other at their hydroxyl groups = microfibrils that form cell wall Example in animals = chitin Monomer is glucose with 1 hydroxyl group replaced with an acetylamino group Polysaccharides
  • 16.
    Quick Think withyour best thing buddy  Draw a monosaccharide  Draw a polysaccharide  Give one biological use for these molecules
  • 17.
    Lipids are aDiverseLipids are a Diverse GroupGroup of Hydrophobic Moleculesof Hydrophobic Molecules Lipids are macromolecules that ARE NOT polymers Hydro = water Phobic = fearing Lipids are mostly hydrocarbons and, therefore, are hydrophobic Three biologically important lipids: 1. Fats 2. Phospholipids 3. Steroids
  • 18.
    FatsFats Each molecule ismade of 1 glycerol & 3 fatty acids Bonds form by dehydration synthesis Carboxyl group = fatty “acid” Triacylglycerol (a.k.a.triglyceride)Saturated fat = no double bonds between C in fatty acid chain Unsaturated fat = 1 or more double bonds between C in fatty acid chain
  • 19.
    FatsFats Function = Energystorage *1 gram of fat stores more than twice as much energy as 1g of carbohydrate! *The fat molecules in animals are stored in adipose cells -Adipose layers protect organs & insulate Adipose Cells (40X) Whale Blubber
  • 20.
    PhospholipidsPhospholipids Made of 1glycerol & only 2 fatty acidsCharged phosphate group makes the head hydrophilic In water, phospholipids arrange into a bilayer according to their hydrophobic & hydrophilic regions Slightly positive H in water attracts negative phosphate group in phospholipids
  • 21.
    SteroidsSteroids Steroids have this4-ringed basic structure attached to a functional group This functional group makes this molecule cholesterol. *Cholesterol is a major component of animal cell membranes *Many sex hormones are made from cholesterol
  • 22.
    Quick Think withyour super hero buddy  Why are fats NOT polymers?  Name one biological use for lipids.
  • 23.
    Proteins Have ManyStructures,Proteins Have Many Structures, Resulting in a Wide Range of FunctionsResulting in a Wide Range of Functions Some protein functions: Enzymatic proteins- catalyze rxns Structural proteins- support Storage Proteins- storage of amino acids Transport proteins- transport other molecules Hormonal proteins- regulate organism’s activities Receptor proteins- allow cells to respond to stimuli Contractile proteins- movement Defensive proteins- protection against disease Hair Protein in seeds Hemoglobin Found in muscle cells
  • 24.
    PolypeptidesPolypeptides •A protein is1 or more polypeptides folded & coiled into a specific shape •A polypeptide is a polymer of amino acids One amino acid monomer linked to a chain of others. All of the amino acids linked together form a polypeptide chain
  • 25.
    Polypeptides:Polypeptides: Amino Acid MonomersAminoAcid Monomers R group R group Leucine Serine Carboxyl groupAmino group Variable side group Each of the 20 different amino acids has a different R group which gives it its unique characteristics
  • 26.
    Polypeptides:Polypeptides: Amino Acid PolymersAminoAcid Polymers Peptide Bond R group R group R group R group Amino group Carboxyl group N-terminus C- terminus Amino Acid chains are held together by peptide bonds which are formed by a dehydration reaction The number, type, & sequence of amino acids determine the shape and function of the polypeptide
  • 27.
    Note that boththe C & N-terminus ionize in aqueous solutions
  • 28.
    Protein ConformationProtein Conformation &Function& Function The function of a protein is an emergent property resulting from its unique shape Model of receptor protein Model of enzyme In each example, the protein’s ability to perform its function is dependant on the specific shape of the protein
  • 29.
    Protein Conformation &Function:Protein Conformation & Function: Four Levels of Protein StructureFour Levels of Protein Structure Primary Structure: a protein’s unique, linear sequence of amino acids which is determined by genetic information
  • 30.
    Protein Conformation &Function:Protein Conformation & Function: Four Levels of Protein StructureFour Levels of Protein Structure Secondary Structure: the result of H-bonding between partially negative oxygen & nitrogen of the polypeptide backbone and hydrogen on the backbone. Primary Structure α-helix structure: coiling that results from H-bonding between every 4th amino acid β-pleated sheet: polypeptide backbone folds on itself, forming H-bonds
  • 31.
    Protein Conformation &Function:Protein Conformation & Function: Four Levels of Protein StructureFour Levels of Protein Structure Tertiary structure: the overall shape of the polypeptide resulting from interactions between R- groups of amino acids. Hydrophobic interactions contribute to tertiary structure: hydrophobic R- groups are organized so that they are in the center of the protein. Hydrophilic amino acid R- groups end up on the outer surface of the protein. Note disulfide bridge reinforces protein conformation
  • 32.
    Protein Conformation &Function:Protein Conformation & Function: Four Levels of Protein StructureFour Levels of Protein Structure Quaternary structure: forms when two or more polypeptide chains aggregate to make one molecule
  • 33.
    Protein Conformation &Function:Protein Conformation & Function: Four Levels of Protein StructureFour Levels of Protein Structure •A protein’s shape is sensitive to the surrounding environment Unfavorable temperature and pH changes can cause a protein to unravel and lose its shape. This is called denaturation
  • 34.
    Quick Think withyour love buddy <3  Draw and label the 4 levels of protein structure
  • 35.
    Nucleic AcidsNucleic AcidsStore & TransmitStore & Transmit Hereditary InformationHereditary Information •Nucleic acids store the instructions for building proteins •Two types: Deoxyribonucleic Acid (DNA) & Ribonucleic Acid (RNA) •The flow of genetic information: DNA RNA protein
  • 36.
    Nucleic Acid StructureNucleicAcid Structure Nucleic acids are polymers of nucleotides. Each nucleotide has 3 parts: 5-carbon sugar, phosphate group, & a nitrogenous base
  • 37.
    Nucleic Acid Structure:NucleicAcid Structure: Nucleotide MonomersNucleotide Monomers Nucleotides can have 1 of 4 different nitrogenous bases: cytosine, thymine – uracil in RNA- (pyrimidines) or adenine, guanine (purines) Thymine (T) Cytosine (C) Adenine (A) Guanine (G) p u r i n e s p y r i m i d i n e s
  • 38.
    Nucleic Acid Structure:NucleicAcid Structure: Nucleotide PolymersNucleotide Polymers Bond occurs at -OH on 3’ C of one nucleotide and the phosphate group on the 5’ C of the other nucleotide Bond formed is called a phosphodiester bond This process creates a sugar- phosphate backbone with the nitrogenous bases sticking out
  • 39.
    The DNA DoubleHelixThe DNA Double Helix The two strands of the double helix are antiparallel, running in the 5’ 3’ direction H-Bonds
  • 40.
    DNA & Proteinsas TapeDNA & Proteins as Tape Measures of EvolutionMeasures of Evolution The sequence of nucleotides in DNA and the sequence of amino acids in proteins can be used to determine evolutionary relationships…closely related species have fewer differences in their sequences. Millionsofyearsago Amino acid differences compared with human hemoglobin
  • 41.
    Quick Think  Whatare the names of the bonds between: 1. Sugars in a polysaccharide 2. Amino acids in a protein 3. Nucleotides in a nucleic acid