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Buffers for Biochemical Reactions 
BY SREEREMYA.S
 Buffers often are overlooked and taken for 
granted by laboratory scientists until the day 
comes when a bizarre artifact is observed and its 
origin is traced to a bad buffer. 
 Although mistakes in the composition of buffers 
have led occasionally discoveries such as the 
correct number of human chromosomes 
(Arduengo, 2010), using the proper buffer, 
correctly prepared, can be key to success in the 
laboratory
 Exclusion by biological membranes. This is 
not important for all biochemical reactions. 
However, if this is an important criterion for your 
particular experiment, it is helpful to remember 
that zwitterionic buffers (positive and negative 
charges on different atoms within the molecule) 
do not pass through biological membranes. 
Examples of zwitterionic buffers include MOPS 
and HEPES; Tris and phosphate buffers do not 
isomerize into zwitterions.
 Minimal salt effects. In other words, the buffer 
components should not interact or affect ions 
involved in the biochemical reactions being 
explored.
 Minimal effects on the dissociation from changes 
in temperature and concentration. Usually there is 
some change in the dissociation with a change in 
concentration. If this change is small, stock solutions 
usually can be diluted without changing the pH. 
 However, with some buffers, changes in concentration 
have more effect on dissociation, and stock solutions 
cannot be diluted without significantly affecting pH. 
 For instance, the pH of Tris decreases approximately 
0.1 pH unit per tenfold dilution, and the pH could 
change dramatically if you dilute a working solution 
and are at the limits of the optimal buffering range of 
the Tris (optimal buffering range pH 7.3–9.3 at 20°C). 
Note that Tris is not one of Good’s buffers.
 A pKa between 6 and 8. Most biochemical 
experiments have an optimal pH in the range of 
6–8. The optimal buffering range for a buffer is 
the dissociation constant of the weak acid 
component of the buffer (pKa) plus or minus pH 
unit. 
 • Solubility in water. Biological reactions, for 
the most part, occur in aqueous environments, 
and the buffer 
should be water-soluble for this reason.
Prepare Buffers at the Appropriate Temperature and 
Concentration 
 Because changes in temperature can be 
associated with a shift in dissociation, prepare 
your buffers at the temperature at which you will 
be performing your experiments. If your 
experiment involves a change in temperature, 
choose a buffer with a pKa that accommodates it. 
 Changes in concentration also can be associated 
with a shift in dissociation, so if you plan to 
maintain buffer stock solutions, make sure that 
the pH adjustment is made after you have diluted 
the stock to the desired concentration and 
equilibrated it at the appropriate temperature. Or, 
at the very least, check the pH after dilution.
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions
Buffers for biochemical reactions

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Buffers for biochemical reactions

  • 1. Buffers for Biochemical Reactions BY SREEREMYA.S
  • 2.  Buffers often are overlooked and taken for granted by laboratory scientists until the day comes when a bizarre artifact is observed and its origin is traced to a bad buffer.  Although mistakes in the composition of buffers have led occasionally discoveries such as the correct number of human chromosomes (Arduengo, 2010), using the proper buffer, correctly prepared, can be key to success in the laboratory
  • 3.  Exclusion by biological membranes. This is not important for all biochemical reactions. However, if this is an important criterion for your particular experiment, it is helpful to remember that zwitterionic buffers (positive and negative charges on different atoms within the molecule) do not pass through biological membranes. Examples of zwitterionic buffers include MOPS and HEPES; Tris and phosphate buffers do not isomerize into zwitterions.
  • 4.  Minimal salt effects. In other words, the buffer components should not interact or affect ions involved in the biochemical reactions being explored.
  • 5.  Minimal effects on the dissociation from changes in temperature and concentration. Usually there is some change in the dissociation with a change in concentration. If this change is small, stock solutions usually can be diluted without changing the pH.  However, with some buffers, changes in concentration have more effect on dissociation, and stock solutions cannot be diluted without significantly affecting pH.  For instance, the pH of Tris decreases approximately 0.1 pH unit per tenfold dilution, and the pH could change dramatically if you dilute a working solution and are at the limits of the optimal buffering range of the Tris (optimal buffering range pH 7.3–9.3 at 20°C). Note that Tris is not one of Good’s buffers.
  • 6.  A pKa between 6 and 8. Most biochemical experiments have an optimal pH in the range of 6–8. The optimal buffering range for a buffer is the dissociation constant of the weak acid component of the buffer (pKa) plus or minus pH unit.  • Solubility in water. Biological reactions, for the most part, occur in aqueous environments, and the buffer should be water-soluble for this reason.
  • 7. Prepare Buffers at the Appropriate Temperature and Concentration  Because changes in temperature can be associated with a shift in dissociation, prepare your buffers at the temperature at which you will be performing your experiments. If your experiment involves a change in temperature, choose a buffer with a pKa that accommodates it.  Changes in concentration also can be associated with a shift in dissociation, so if you plan to maintain buffer stock solutions, make sure that the pH adjustment is made after you have diluted the stock to the desired concentration and equilibrated it at the appropriate temperature. Or, at the very least, check the pH after dilution.