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1
CHAPTER 1
BIOCHIP
INTRODUCTION
Most of us won’t like the idea of implanting a biochip in our body that identifies us
uniquely and can be used to track our location. That would be a major loss of privacy. But
there is a flip side to this! Such biochips could help agencies to locate lost children, downed
soldiers and wandering Alzheimer’s patients. The human body is the next big target of
chipmakers. It won’t be long before biochip implants will come to the rescue of sick, or those
who are handicapped in someway. Large amount of money and research has already gone
into this area of technology.Anyway, such implants have already experimented with. A few
US companies are selling both chips and their detectors. The chips are of size of an uncooked
grain of rice, small enough to be injected under the skin using a syringe needle. They respond
to a signal from the detector, held just a few feet away, by transmitting an identification
number. This number is then compared with the database listings of register pets. In
1953, Watson and Crick announced their discovery of the now familiar double helix structure
of DNA molecules and set the stage for genetics research that continues to the present
day. The development of sequencing techniques in 1977 by Gilbert and Sanger (working
separately) enabled researchers to directly read the genetic codes that provide instructions
for protein synthesis. Two additional developments enabled the technology used in modern
DNA-based. First, in 1983 Mullis invented the polymerase chain reaction (PCR) technique, a
method for amplifying DNA concentrations. This discovery made possible the detection of
extremely small quantities of DNA in samples. Secondly in 1986 Hood and co-workers
devised a method to label DNA molecules with fluorescent tags instead of radiolabels, thus
enabling hybridization experiments to be observed optically.
2
CHAPTER 2
BIOCHIP DEFINITION
A biochip is a collection of miniaturized test sites (micro arrays) arranged on a solid
substrate that permits many tests to be performed at the same time in order to get higher
throughput and speed. Typically, a biochip’s surface area is not longer than a fingernail. Like
a computer chip that can perform millions of mathematical operation in one second, a biochip
can perform thousands of biological operations, such as decoding genes, in a few seconds.
A genetic biochip is designed to “freeze” into place the structures of many short strands of
DNA (deoxyribonucleic acid), the basic chemical instruction that determines the
characteristics of an organism. Effectively, it is used as a kind of “test tube” for real chemical
samples.
A specifically designed microscope can determine where the sample hybridized with
DNA strands in the biochip. Biochips helped to dramatically increase the speed of the
identification of the estimated 80,000 genes in human DNA, in the world wide research
collaboration known as the Human Genome Project. The microchip is described as a sort of
“word search” function that can quickly sequence DNA.In addition to genetic applications,
the biochip is being used in toxicological, protein, and biochemical research. Biochips can
also be used to rapidly detect chemical agents used in biological warfare so that defensive
measures can be taken. Motorola, Hitachi, IBM, Texas Instruments have entered into the
biochip business.
3
CHAPTER 3
STRUCTURE AND WORKING OF AN IMPLANTED SYSTEM
The biochip implants system consists of two components: a transponder and a reader
or scanner.The transponder is the actual biochip implant. The biochip system is radio
frequency identification (RFID) system, using low-frequency radio signals to communicate
between the biochip and reader. The reading range or activation range, between reader and
biochip is small, normally between 2 and 12 inches.
3.1 The transponder :
The transponder is the actual biochip implant. It is a passivetransponder, meaning it
contains no battery or energy of its own. In comparison, an active transponder would provide
its own energy source, normally a small battery. Because the passive contains no battery, or
nothing to wear out, it has a very long life up to 99 years, and no maintenance. Being passive,
it is inactive until the reader activates it by sending it a low-power electrical charge. The
reader reads or scans the implanted biochip and receives back data (in this case an
identification number) from the biochips. The communication between biochip and reader is
via low-frequency radio waves. Since the communication is via very low frequency radio
waves it is nit at all harmful to the human body. The biochip-transponder consists of four
parts; computer microchip, antenna coil, capacitor and the glass capsule.
Fig 3.1.1:Components of a biochip
3.2 Computer microchips :
The microchip stores a unique identification number from 10 to 15 digits long. The
storage capacity of the current microchips is limited, capable of storing only a single ID
number. AVID (American Veterinary Identification Devices), claims their chips, using a
4
nnn-nnn-nnn format, has the capability of over 70 trillion unique numbers. The unique ID
number is “etched” or encoded via a laser onto the surface of the microchip before assembly.
Once the number is encoded it is impossible to alter. The microchip also contains the
electronic circuitry necessary to transmit the ID number to the “reader”.
3.3 Antenna Coil :
This is normally a simple, coil of copper wire around a ferrite or iron core. This tiny,
primitive, radio antenna receives and sends signals from the reader or scanner.
3.4 Tuning Capacitor:
The capacitor stores the small electrical charge (less than 1/1000 of a watt) sent by the
reader or scanner, which activates the transponder. This “activation” allows the transponder
to send back the ID number encoded in the computer chip. Because “radio waves” are
utilized to communicate between the transponder and reader, the capacitor is tuned to the
same frequency as the reader.
Fig 3.5.2:Reader or Scanner
3.5 The reader:
The reader consists of an “exciter coil” which creates an electromagnetic field that,
via radio signals, provides the necessary energy (less than 1/1000 of a watt) to “excite” or
“activate”the implanted biochip. The reader also carries a receiving coil that receives the
transmitted code or ID number sent back from the “activated” implanted biochip. This all
takes place very fast, in milliseconds. The reader also contains the software and components
5
to decode the received code and display the result in an LCD display. The reader can include
a RS-232 port to attach a computer.
3.6 How it works:
The reader generates a low-power, electromagnetic field, in this case via radio
signals, which “activates” the implanted biochip. This “activation” enables the biochip to
send the ID code back to the reader via radio signals. The reader amplifies the received code,
converts it to digital format, decodes and displays the ID number on the reader’s LCD
display. The reader must normally be between 2 and 12 inches near the biochip to
communicate. The reader and biochip can communicate through most materials, except
metal.
6
CHAPTER 4
PROBLEMS OF BIOCHIP
A chip implant would contain a person’s financial world, medical history health care
it would contain his electronic life. If cash no longer existed and if the world’s economy was
totally chip oriented; there would be a huge "black-market" for chips! Since there is no cash
criminals would cut off hands and heads, stealing "rich-folks" chips. It is very dangerous
because once kidnappers get to know about these chips, they will skin people to find them,"
There are technological, standardization-related, ethical and societal problems in biochip
development. For biochip market expansion, in addition to technological problems, it is
necessary to overcome social, institutional, marketing and economic problems all together.
For research and development biochips, 'exhaustiveness' is an important technological
requirement because they are used as a 'search tool' to find genes related to diseases and
involved in life phenomena. On the other hand, the technological requirement of diagnostic
biochips is the 'accurate, quantitative and reproducible detection' of specific genes and
proteins characterizing diseases. Accuracy and reproducibility of analytical results are also
required in research and development, even if there includes failing data. By contrast, failing
is not an option in diagnosis on hospital patients. In research and development, researchers
use chips with sufficient knowledge to modify chips to collect necessary data for their
research.[4–8]By contrast, to spread the use of diagnostic biochips widely, it is necessary for
persons unfamiliar with handling biochips to be able to operate them with no errors. Thus,
'simple operation for everybody' is a technological requirement.
Experimental plans can be secured by designing beforehand in research and
development, but the results should be obtained within approximately 1 h to reflect the
results in the prescription of drugs and diagnosis for outpatients, for which the 'rapid
obtaining of analytical results' is a technological requirement.
7
CHAPTER 5
ADVANTAGES DISADVANTAGES AND ITS CONCLUSION
5.1 ADVANTAGES
1. To rescue the sick
2. To find lost people.
3. To locate downed children and wandering Alzheimer’s Patients.
4. To identify person uniquely.
5. They can perform thousands of biological reactions operations in few seconds.
6. In monitoring health condition of individuals in which they are specifically employed.
7. They can perform thousands of biochemical reactions.
5.2 DISADVANTAGES
1. They raise critical issues of personal privacy.
2. They mark the end of human freedom and dignity.
3.They may not be supported by large % of people.
4. There is a danger of turning every man, women, and Child into a controlled slave.
5. Through cybernitic biochip implants people will think and act as exactly pre-programmed.
6. They can be implanted into one’s body without their knowledge.
5.3 CONCLUSION
1. Infotech will be implanted in our bodies.
2. A chip implanted somewhere in human bodies might serve as a combination of credit
card, passport, driver's license, personal diary.
3. No longer would it beneeded to worry about losing the credit cards while traveling.
4. A chip inserted into human bodies might also give us extra mental power.
5. The really fascinating idea is under fast track research "but we're close.”
6. The day in which we have chips embedded in our skins is not too far from now.
8
6.REFERENCES
• www.google.com
• www.wikipedia.com
• www.studymafia.org
• "High-Level Synthesis of Digital Microfluidic Biochips" (PDF). Duke University.
• W. S. Hughes, “The potential difference between glass and electrolytes in contact
with water,” J. Am. Chem. Soc. 44.
• J. S. Schultz and R. F. Taylor in Handbook of Chemical and Biological Sensors, J. S.
Schultz and R. F. Taylor.
• Introduction to Chemical and Biological Sensors, pp. 1–10, Institute of Physics
Publishing, Philadelphia, 1996.
• D. L. Nelson and M. M. Cox, Lehninger Principles of Biochemistry, Worth
Publishers, New York, 2000.
• A. M. Maxam and W. Gilbert, “A new method for sequencing DNA,” Proc. Natl.
Acad. Sci. 74, pp. 560–564, 1977.
• F. Sanger, S. Nicklen, and A. R. Coulson, “DNA sequencing with chainterminating
inhibitors,” Proc. Natl. Acad. Sci. 74, pp. 5463–5467, 1977.
• L. M. Smith, J. Z. Sanders, R. J. Kaiser, P. Hughes, C. Dodd, C. R. Connell, C.
Heiner, S. B. H. Kent, and L. E. Hood, “Fluorescence detection in automated DNA
sequence analysis,”Nature 321, pp. 61–67, 1986.
• P. Fortina, D. Graves, C. Stoeckert, Jr., S. McKenzie, and S. Surrey in Biochip
Technology, J. Cheng and L. J. Kricka, eds., ch. Technology Options and
Applications of DNA Microarrays, pp. 185–216, Harwood Academic Publishers,
Philadelphia, 2001.
• M. Schena, D. Shalon, R. W. Davis, and P. O. Brown, “Quantitative monitoring of
gene expression patterns with a complementary DNA microarray,” Science 270.
• G. MacBeath, A. N. Koehler, and S. L. Schreiber, “Printing small molecules as
microarrays and detecting protein-ligand interactions en masse,” J. Am. Chem.
Soc. 121.

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Biochip seminar report

  • 1. 1 CHAPTER 1 BIOCHIP INTRODUCTION Most of us won’t like the idea of implanting a biochip in our body that identifies us uniquely and can be used to track our location. That would be a major loss of privacy. But there is a flip side to this! Such biochips could help agencies to locate lost children, downed soldiers and wandering Alzheimer’s patients. The human body is the next big target of chipmakers. It won’t be long before biochip implants will come to the rescue of sick, or those who are handicapped in someway. Large amount of money and research has already gone into this area of technology.Anyway, such implants have already experimented with. A few US companies are selling both chips and their detectors. The chips are of size of an uncooked grain of rice, small enough to be injected under the skin using a syringe needle. They respond to a signal from the detector, held just a few feet away, by transmitting an identification number. This number is then compared with the database listings of register pets. In 1953, Watson and Crick announced their discovery of the now familiar double helix structure of DNA molecules and set the stage for genetics research that continues to the present day. The development of sequencing techniques in 1977 by Gilbert and Sanger (working separately) enabled researchers to directly read the genetic codes that provide instructions for protein synthesis. Two additional developments enabled the technology used in modern DNA-based. First, in 1983 Mullis invented the polymerase chain reaction (PCR) technique, a method for amplifying DNA concentrations. This discovery made possible the detection of extremely small quantities of DNA in samples. Secondly in 1986 Hood and co-workers devised a method to label DNA molecules with fluorescent tags instead of radiolabels, thus enabling hybridization experiments to be observed optically.
  • 2. 2 CHAPTER 2 BIOCHIP DEFINITION A biochip is a collection of miniaturized test sites (micro arrays) arranged on a solid substrate that permits many tests to be performed at the same time in order to get higher throughput and speed. Typically, a biochip’s surface area is not longer than a fingernail. Like a computer chip that can perform millions of mathematical operation in one second, a biochip can perform thousands of biological operations, such as decoding genes, in a few seconds. A genetic biochip is designed to “freeze” into place the structures of many short strands of DNA (deoxyribonucleic acid), the basic chemical instruction that determines the characteristics of an organism. Effectively, it is used as a kind of “test tube” for real chemical samples. A specifically designed microscope can determine where the sample hybridized with DNA strands in the biochip. Biochips helped to dramatically increase the speed of the identification of the estimated 80,000 genes in human DNA, in the world wide research collaboration known as the Human Genome Project. The microchip is described as a sort of “word search” function that can quickly sequence DNA.In addition to genetic applications, the biochip is being used in toxicological, protein, and biochemical research. Biochips can also be used to rapidly detect chemical agents used in biological warfare so that defensive measures can be taken. Motorola, Hitachi, IBM, Texas Instruments have entered into the biochip business.
  • 3. 3 CHAPTER 3 STRUCTURE AND WORKING OF AN IMPLANTED SYSTEM The biochip implants system consists of two components: a transponder and a reader or scanner.The transponder is the actual biochip implant. The biochip system is radio frequency identification (RFID) system, using low-frequency radio signals to communicate between the biochip and reader. The reading range or activation range, between reader and biochip is small, normally between 2 and 12 inches. 3.1 The transponder : The transponder is the actual biochip implant. It is a passivetransponder, meaning it contains no battery or energy of its own. In comparison, an active transponder would provide its own energy source, normally a small battery. Because the passive contains no battery, or nothing to wear out, it has a very long life up to 99 years, and no maintenance. Being passive, it is inactive until the reader activates it by sending it a low-power electrical charge. The reader reads or scans the implanted biochip and receives back data (in this case an identification number) from the biochips. The communication between biochip and reader is via low-frequency radio waves. Since the communication is via very low frequency radio waves it is nit at all harmful to the human body. The biochip-transponder consists of four parts; computer microchip, antenna coil, capacitor and the glass capsule. Fig 3.1.1:Components of a biochip 3.2 Computer microchips : The microchip stores a unique identification number from 10 to 15 digits long. The storage capacity of the current microchips is limited, capable of storing only a single ID number. AVID (American Veterinary Identification Devices), claims their chips, using a
  • 4. 4 nnn-nnn-nnn format, has the capability of over 70 trillion unique numbers. The unique ID number is “etched” or encoded via a laser onto the surface of the microchip before assembly. Once the number is encoded it is impossible to alter. The microchip also contains the electronic circuitry necessary to transmit the ID number to the “reader”. 3.3 Antenna Coil : This is normally a simple, coil of copper wire around a ferrite or iron core. This tiny, primitive, radio antenna receives and sends signals from the reader or scanner. 3.4 Tuning Capacitor: The capacitor stores the small electrical charge (less than 1/1000 of a watt) sent by the reader or scanner, which activates the transponder. This “activation” allows the transponder to send back the ID number encoded in the computer chip. Because “radio waves” are utilized to communicate between the transponder and reader, the capacitor is tuned to the same frequency as the reader. Fig 3.5.2:Reader or Scanner 3.5 The reader: The reader consists of an “exciter coil” which creates an electromagnetic field that, via radio signals, provides the necessary energy (less than 1/1000 of a watt) to “excite” or “activate”the implanted biochip. The reader also carries a receiving coil that receives the transmitted code or ID number sent back from the “activated” implanted biochip. This all takes place very fast, in milliseconds. The reader also contains the software and components
  • 5. 5 to decode the received code and display the result in an LCD display. The reader can include a RS-232 port to attach a computer. 3.6 How it works: The reader generates a low-power, electromagnetic field, in this case via radio signals, which “activates” the implanted biochip. This “activation” enables the biochip to send the ID code back to the reader via radio signals. The reader amplifies the received code, converts it to digital format, decodes and displays the ID number on the reader’s LCD display. The reader must normally be between 2 and 12 inches near the biochip to communicate. The reader and biochip can communicate through most materials, except metal.
  • 6. 6 CHAPTER 4 PROBLEMS OF BIOCHIP A chip implant would contain a person’s financial world, medical history health care it would contain his electronic life. If cash no longer existed and if the world’s economy was totally chip oriented; there would be a huge "black-market" for chips! Since there is no cash criminals would cut off hands and heads, stealing "rich-folks" chips. It is very dangerous because once kidnappers get to know about these chips, they will skin people to find them," There are technological, standardization-related, ethical and societal problems in biochip development. For biochip market expansion, in addition to technological problems, it is necessary to overcome social, institutional, marketing and economic problems all together. For research and development biochips, 'exhaustiveness' is an important technological requirement because they are used as a 'search tool' to find genes related to diseases and involved in life phenomena. On the other hand, the technological requirement of diagnostic biochips is the 'accurate, quantitative and reproducible detection' of specific genes and proteins characterizing diseases. Accuracy and reproducibility of analytical results are also required in research and development, even if there includes failing data. By contrast, failing is not an option in diagnosis on hospital patients. In research and development, researchers use chips with sufficient knowledge to modify chips to collect necessary data for their research.[4–8]By contrast, to spread the use of diagnostic biochips widely, it is necessary for persons unfamiliar with handling biochips to be able to operate them with no errors. Thus, 'simple operation for everybody' is a technological requirement. Experimental plans can be secured by designing beforehand in research and development, but the results should be obtained within approximately 1 h to reflect the results in the prescription of drugs and diagnosis for outpatients, for which the 'rapid obtaining of analytical results' is a technological requirement.
  • 7. 7 CHAPTER 5 ADVANTAGES DISADVANTAGES AND ITS CONCLUSION 5.1 ADVANTAGES 1. To rescue the sick 2. To find lost people. 3. To locate downed children and wandering Alzheimer’s Patients. 4. To identify person uniquely. 5. They can perform thousands of biological reactions operations in few seconds. 6. In monitoring health condition of individuals in which they are specifically employed. 7. They can perform thousands of biochemical reactions. 5.2 DISADVANTAGES 1. They raise critical issues of personal privacy. 2. They mark the end of human freedom and dignity. 3.They may not be supported by large % of people. 4. There is a danger of turning every man, women, and Child into a controlled slave. 5. Through cybernitic biochip implants people will think and act as exactly pre-programmed. 6. They can be implanted into one’s body without their knowledge. 5.3 CONCLUSION 1. Infotech will be implanted in our bodies. 2. A chip implanted somewhere in human bodies might serve as a combination of credit card, passport, driver's license, personal diary. 3. No longer would it beneeded to worry about losing the credit cards while traveling. 4. A chip inserted into human bodies might also give us extra mental power. 5. The really fascinating idea is under fast track research "but we're close.” 6. The day in which we have chips embedded in our skins is not too far from now.
  • 8. 8 6.REFERENCES • www.google.com • www.wikipedia.com • www.studymafia.org • "High-Level Synthesis of Digital Microfluidic Biochips" (PDF). Duke University. • W. S. Hughes, “The potential difference between glass and electrolytes in contact with water,” J. Am. Chem. Soc. 44. • J. S. Schultz and R. F. Taylor in Handbook of Chemical and Biological Sensors, J. S. Schultz and R. F. Taylor. • Introduction to Chemical and Biological Sensors, pp. 1–10, Institute of Physics Publishing, Philadelphia, 1996. • D. L. Nelson and M. M. Cox, Lehninger Principles of Biochemistry, Worth Publishers, New York, 2000. • A. M. Maxam and W. Gilbert, “A new method for sequencing DNA,” Proc. Natl. Acad. Sci. 74, pp. 560–564, 1977. • F. Sanger, S. Nicklen, and A. R. Coulson, “DNA sequencing with chainterminating inhibitors,” Proc. Natl. Acad. Sci. 74, pp. 5463–5467, 1977. • L. M. Smith, J. Z. Sanders, R. J. Kaiser, P. Hughes, C. Dodd, C. R. Connell, C. Heiner, S. B. H. Kent, and L. E. Hood, “Fluorescence detection in automated DNA sequence analysis,”Nature 321, pp. 61–67, 1986. • P. Fortina, D. Graves, C. Stoeckert, Jr., S. McKenzie, and S. Surrey in Biochip Technology, J. Cheng and L. J. Kricka, eds., ch. Technology Options and Applications of DNA Microarrays, pp. 185–216, Harwood Academic Publishers, Philadelphia, 2001. • M. Schena, D. Shalon, R. W. Davis, and P. O. Brown, “Quantitative monitoring of gene expression patterns with a complementary DNA microarray,” Science 270. • G. MacBeath, A. N. Koehler, and S. L. Schreiber, “Printing small molecules as microarrays and detecting protein-ligand interactions en masse,” J. Am. Chem. Soc. 121.