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LECTURE PRESENTATIONS
                                    For CAMPBELL BIOLOGY, NINTH EDITION
                Jane B. Reece, Lisa A. Urry, Michael L. Cain, Steven A. Wasserman, Peter V. Minorsky, Robert B. Jackson



Chapter 6

 A Tour of the Cell




                                                                                                                    Lectures by
                                                                                                                    Erin Barley
                                                                                                            Kathleen Fitzpatrick

© 2011 Pearson Education, Inc.
Overview: The Fundamental Units of Life
     • All organisms are made of cells
     • The cell is the simplest collection of matter
       that can be alive
     • Cell structure is correlated to cellular function
     • All cells are related by their descent from earlier
       cells




© 2011 Pearson Education, Inc.
Concept 6.1: Biologists use microscopes and
the tools of biochemistry to study cells
     • Though usually too small to be seen by the
       unaided eye, cells can be complex




© 2011 Pearson Education, Inc.
Microscopy
     • Scientists use microscopes to visualize cells too
       small to see with the naked eye
     • In a light microscope (LM), visible light is
       passed through a specimen and then through
       glass lenses
     • Lenses refract (bend) the light, so that the image
       is magnified




© 2011 Pearson Education, Inc.
• Three important parameters of microscopy
                – Magnification, the ratio of an object’s image size
                  to its real size
                – Resolution, the measure of the clarity of the
                  image, or the minimum distance of two
                  distinguishable points
                – Contrast, visible differences in parts of the
                  sample




© 2011 Pearson Education, Inc.
Figure 6.2     10 m

                      Human height
                1m
                      Length of some
                      nerve and




                                          Unaided eye
                      muscle cells
              0.1 m
                      Chicken egg

               1 cm

                      Frog egg
              1 mm




                                                            Light microscopy
                      Human egg
             100 µm
                      Most plant and
                      animal cells
              10 µm
                      Nucleus
                      Most bacteria




                                                                               Electron microscopy
                      Mitochondrion
               1 µm


                      Smallest bacteria                   Super-
             100 nm
                      Viruses                           resolution
                                                        microscopy
                      Ribosomes
              10 nm
                      Proteins
                      Lipids
               1 nm
                      Small molecules


             0.1 nm   Atoms
Figure 6.2a

      10 m

              Human height
        1m
              Length of some
              nerve and




                               Unaided eye
              muscle cells
    0.1 m
              Chicken egg

      1 cm

              Frog egg
    1 mm


              Human egg
100 µm
Figure 6.2b
                1 cm

                       Frog egg
               1 mm


                       Human egg
              100 µm




                                               Light microscopy
                       Most plant and
                       animal cells
              10 µm
                       Nucleus
                       Most bacteria
                       Mitochondrion
               1 µm




                                                                  Electron microscopy
                       Smallest bacteria     Super-
              100 nm
                       Viruses             resolution
                                           microscopy
                       Ribosomes
              10 nm
                       Proteins
                       Lipids
               1 nm
                       Small molecules

              0.1 nm   Atoms
Figure 6.3
   Light Microscopy (LM)                                   Electron Microscopy (EM)
               Brightfield              Confocal                          Longitudinal section   Cross section
    (unstained specimen)                                                  of cilium              of cilium
                                                                      Cilia




                        50 µm
                Brightfield
       (stained specimen)




                                        50 µm
                                                                                                       2 µm

                                                                               2 µm   Transmission electron
                                                           Scanning electron          microscopy (TEM)
                                        Deconvolution
                                                           microscopy (SEM)
           Phase-contrast




                                        10 µm
  Differential-interference-
       contrast (Nomarski)              Super-resolution




             Fluorescence
                                        1 µm




                                10 µm
• LMs can magnify effectively to about 1,000 times
       the size of the actual specimen
     • Various techniques enhance contrast and
       enable cell components to be stained or labeled
     • Most subcellular structures, including
       organelles (membrane-enclosed
       compartments), are too small to be resolved by
       an LM




© 2011 Pearson Education, Inc.
• Two basic types of electron microscopes
       (EMs) are used to study subcellular structures
     • Scanning electron microscopes (SEMs) focus
       a beam of electrons onto the surface of a
       specimen, providing images that look 3-D
     • Transmission electron microscopes (TEMs)
       focus a beam of electrons through a specimen
     • TEMs are used mainly to study the internal
       structure of cells


© 2011 Pearson Education, Inc.
• Recent advances in light microscopy
                – Confocal microscopy and deconvolution
                  microscopy provide sharper images of three-
                  dimensional tissues and cells
                – New techniques for labeling cells improve
                  resolution




© 2011 Pearson Education, Inc.
Cell Fractionation
     • Cell fractionation takes cells apart and
       separates the major organelles from one
       another
     • Centrifuges fractionate cells into their
       component parts
     • Cell fractionation enables scientists to determine
       the functions of organelles
     • Biochemistry and cytology help correlate cell
       function with structure


© 2011 Pearson Education, Inc.
Figure 6.4   TECHNIQUE




                                         Homogenization
                            Tissue
                            cells
                                                                   Homogenate
              Centrifuged at
                  1,000 g
             (1,000 times the                  Centrifugation
             force of gravity)
                for 10 min Supernatant
                            poured into
                            next tube
                                                          Differential
                                                          centrifugation
                                    20,000 g
                                     20 min




                                                    80,000 g
                                                     60 min
              Pellet rich in
              nuclei and
              cellular debris
                                                                    150,000 g
                                                                       3 hr

                                Pellet rich in
                                mitochondria
                                (and chloro-
                                plasts if cells
                                are from a plant)
                                                Pellet rich in
                                                “microsomes”
                                                (pieces of plasma
                                                membranes and
                                                cells’ internal
                                                membranes)        Pellet rich in
                                                                  ribosomes
Figure 6.4a



TECHNIQUE




                       Homogenization
              Tissue
              cells
                                           Homogenate


                          Centrifugation
Figure 6.4b
      TECHNIQUE (cont.)    Centrifuged at
                               1,000 g
                          (1,000 times the
                          force of gravity)
                             for 10 min Supernatant
                                          poured into
                                          next tube
                                                                   Differential
                                                                   centrifugation
                                             20,000 g
                                             20 min




                                                           80,000 g
                                                           60 min
                           Pellet rich in
                           nuclei and
                           cellular debris
                                                                         150,000 g
                                                                            3 hr
                                        Pellet rich in
                                        mitochondria
                                        (and chloro-
                                        plasts if cells
                                        are from a plant)
                                                        Pellet rich in
                                                        “microsomes”
                                                                                    Pellet rich in
                                                                                    ribosomes
Concept 6.2: Eukaryotic cells have internal
membranes that compartmentalize their
functions
     • The basic structural and functional unit of every
       organism is one of two types of cells: prokaryotic
       or eukaryotic
     • Only organisms of the domains Bacteria and
       Archaea consist of prokaryotic cells
     • Protists, fungi, animals, and plants all consist of
       eukaryotic cells


© 2011 Pearson Education, Inc.
Comparing Prokaryotic and Eukaryotic
Cells
     • Basic features of all cells
                –   Plasma membrane
                –   Semifluid substance called cytosol
                –   Chromosomes (carry genes)
                –   Ribosomes (make proteins)




© 2011 Pearson Education, Inc.
• Prokaryotic cells are characterized by having
                –   No nucleus
                –   DNA in an unbound region called the nucleoid
                –   No membrane-bound organelles
                –   Cytoplasm bound by the plasma membrane




© 2011 Pearson Education, Inc.
Figure 6.5


                  Fimbriae

                             Nucleoid

                             Ribosomes

                                Plasma
                               membrane
 Bacterial
 chromosome                       Cell wall

                                   Capsule

                                                          0.5 µm
 (a) A typical                     Flagella   (b) A thin section
     rod-shaped                                   through the
     bacterium                                    bacterium Bacillus
                                                  coagulans (TEM)
Figure 6.5a




                               0.5 µm
              (b) A thin section through the
                  bacterium Bacillus coagulans
                  (TEM)
• Eukaryotic cells are characterized by having
                – DNA in a nucleus that is bounded by a
                  membranous nuclear envelope
                – Membrane-bound organelles
                – Cytoplasm in the region between the plasma
                  membrane and nucleus
     • Eukaryotic cells are generally much larger than
       prokaryotic cells




© 2011 Pearson Education, Inc.
• The plasma membrane is a selective barrier
       that allows sufficient passage of oxygen,
       nutrients, and waste to service the volume of
       every cell
     • The general structure of a biological membrane
       is a double layer of phospholipids




© 2011 Pearson Education, Inc.
Figure 6.6
                                       (a) TEM of a plasma
                Outside of cell            membrane




             Inside of cell
                              0.1 µm
                                               Carbohydrate side chains



                 Hydrophilic
                 region



                Hydrophobic
                region
                 Hydrophilic            Phospholipid          Proteins
                 region
                                       (b) Structure of the plasma membrane
Figure 6.6a




                 Outside of cell




              Inside of cell
                            0.1 µm
              (a) TEM of a plasma membrane
• Metabolic requirements set upper limits on the
       size of cells
     • The surface area to volume ratio of a cell is
       critical
     • As the surface area increases by a factor of n2,
       the volume increases by a factor of n3
     • Small cells have a greater surface area relative
       to volume



© 2011 Pearson Education, Inc.
Figure 6.7
                                                    Surface area increases while
                                                   total volume remains constant




                                                    5
                                                                 1
                                           1

             Total surface area
             [sum of the surface areas
             (height × width) of all box       6         150         750
             sides × number of boxes]


             Total volume
             [height × width × length
             × number of boxes]                1         125         125


             Surface-to-volume
             (S-to-V) ratio
             [surface area ÷ volume]           6         1.2          6
A Panoramic View of the Eukaryotic Cell
     • A eukaryotic cell has internal membranes that
       partition the cell into organelles
     • Plant and animal cells have most of the same
       organelles




© 2011 Pearson Education, Inc.
Figure 6.8a

                           ENDOPLASMIC RETICULUM (ER)
                                                           Nuclear
                                 Rough Smooth              envelope
                Flagellum         ER     ER                          NUCLEUS
                                                           Nucleolus
                                                           Chromatin
              Centrosome
                                                                   Plasma
                                                                   membrane
     CYTOSKELETON:
       Microfilaments
Intermediate filaments
         Microtubules
                                                                  Ribosomes

              Microvilli
                                                            Golgi apparatus
          Peroxisome

                     Mitochondrion              Lysosome
Figure 6.8c
                     Nuclear             Rough
                    envelope          endoplasmic
 NUCLEUS                               reticulum       Smooth
                   Nucleolus                           endoplasmic
                                                       reticulum
                   Chromatin


                                                         Ribosomes

                                                         Central vacuole
          Golgi
      apparatus                                          Microfilaments
                                                         Intermediate      CYTOSKELETON
                                                         filaments
                                                         Microtubules


    Mitochondrion
         Peroxisome
 Plasma membrane                                         Chloroplast

                          Cell wall                 Plasmodesmata
              Wall of adjacent cell
Concept 6.3: The eukaryotic cell’s genetic
instructions are housed in the nucleus and
carried out by the ribosomes
     • The nucleus contains most of the DNA in a
       eukaryotic cell
     • Ribosomes use the information from the DNA to
       make proteins




© 2011 Pearson Education, Inc.
The Nucleus: Information Central
     • The nucleus contains most of the cell’s genes
       and is usually the most conspicuous organelle
     • The nuclear envelope encloses the nucleus,
       separating it from the cytoplasm
     • The nuclear membrane is a double membrane;
       each membrane consists of a lipid bilayer




© 2011 Pearson Education, Inc.
Figure 6.9
   1 µm
                                                                                         Nucleus
                                                          Nucleolus

                                                     Chromatin


                                         Nuclear envelope:
                                         Inner membrane
                                         Outer membrane
                                         Nuclear pore


                                                                                              Rough ER
                                         Pore
                                         complex
           Surface of nuclear
           envelope                 Ribosome




                                                     Close-up
 0.25 µm




                                                     of nuclear             Chromatin
                                                     envelope
                                         1 µm




             Pore complexes (TEM)

                                                                      Nuclear lamina (TEM)
Figure 6.9a
                                                     Nucleus
                             Nucleolus

                          Chromatin


              Nuclear envelope:
              Inner membrane
              Outer membrane
              Nuclear pore

                                                        Rough ER
                Pore
                complex
Ribosome




                           Close-up
                           of nuclear    Chromatin
                           envelope
Figure 6.9b

              1 µm




                                    Nuclear envelope:
                                    Inner membrane
                                    Outer membrane
                                    Nuclear pore




               Surface of nuclear
               envelope
Figure 6.9c




              0.25 µm




                        Pore complexes (TEM)
Figure 6.9d




              1 µm




                     Nuclear lamina (TEM)
• Pores regulate the entry and exit of molecules
       from the nucleus
     • The shape of the nucleus is maintained by the
       nuclear lamina, which is composed of protein




© 2011 Pearson Education, Inc.
• In the nucleus, DNA is organized into discrete
       units called chromosomes
     • Each chromosome is composed of a single DNA
       molecule associated with proteins
     • The DNA and proteins of chromosomes are
       together called chromatin
     • Chromatin condenses to form discrete
       chromosomes as a cell prepares to divide
     • The nucleolus is located within the nucleus and
       is the site of ribosomal RNA (rRNA) synthesis

© 2011 Pearson Education, Inc.
Ribosomes: Protein Factories
     • Ribosomes are particles made of ribosomal
       RNA and protein
     • Ribosomes carry out protein synthesis in two
       locations
                – In the cytosol (free ribosomes)
                – On the outside of the endoplasmic reticulum or
                  the nuclear envelope (bound ribosomes)




© 2011 Pearson Education, Inc.
Figure 6.10




              0.25 µm

                                   Free ribosomes in cytosol
                                   Endoplasmic reticulum (ER)
                                   Ribosomes bound to ER
                                                  Large
                                                  subunit

                                                    Small
                                                    subunit
              TEM showing ER and
              ribosomes              Diagram of a ribosome
Figure 6.10a




               0.25 µm

                                Free ribosomes in cytosol
                                Endoplasmic reticulum (ER)
                                Ribosomes bound to ER




           TEM showing ER and
           ribosomes
Concept 6.4: The endomembrane system
regulates protein traffic and performs
metabolic functions in the cell
     • Components of the endomembrane system
                –   Nuclear envelope
                –   Endoplasmic reticulum
                –   Golgi apparatus
                –   Lysosomes
                –   Vacuoles
                –   Plasma membrane
     • These components are either continuous or
       connected via transfer by vesicles
© 2011 Pearson Education, Inc.
The Endoplasmic Reticulum: Biosynthetic
Factory
     • The endoplasmic reticulum (ER) accounts for
       more than half of the total membrane in many
       eukaryotic cells
     • The ER membrane is continuous with the nuclear
       envelope
     • There are two distinct regions of ER
                – Smooth ER, which lacks ribosomes
                – Rough ER, surface is studded with ribosomes


© 2011 Pearson Education, Inc.
Figure 6.11        Smooth ER
                                                       Nuclear
                                                       envelope
              Rough ER




                   ER lumen
                    Cisternae                                     Transitional ER
                               Ribosomes
                                   Transport vesicle
                                                                       200 nm
                         Smooth ER                     Rough ER
Figure 6.11a



                Smooth ER



           Rough ER                               Nuclear
                                                  envelope




          ER lumen
               Cisternae                                 Transitional ER
                           Ribosomes
                              Transport vesicle
Figure 6.11b




               Smooth ER   Rough ER   200 nm
Functions of Smooth ER
     • The smooth ER
                –   Synthesizes lipids
                –   Metabolizes carbohydrates
                –   Detoxifies drugs and poisons
                –   Stores calcium ions




© 2011 Pearson Education, Inc.
Functions of Rough ER
     • The rough ER
                – Has bound ribosomes, which secrete
                  glycoproteins (proteins covalently bonded to
                  carbohydrates)
                – Distributes transport vesicles, proteins
                  surrounded by membranes
                – Is a membrane factory for the cell




© 2011 Pearson Education, Inc.
The Golgi Apparatus: Shipping and
Receiving Center
     • The Golgi apparatus consists of flattened
       membranous sacs called cisternae
     • Functions of the Golgi apparatus
                – Modifies products of the ER
                – Manufactures certain macromolecules
                – Sorts and packages materials into transport
                  vesicles




© 2011 Pearson Education, Inc.
Figure 6.12




 cis face
 (“receiving” side of                                        0.1 µm
 Golgi apparatus)
                             Cisternae




                        trans face
                        (“shipping” side of   TEM of Golgi apparatus
                        Golgi apparatus)
Figure 6.12a



                              0.1 µm




               TEM of Golgi apparatus
Lysosomes: Digestive Compartments
     • A lysosome is a membranous sac of
       hydrolytic enzymes that can digest
       macromolecules
     • Lysosomal enzymes can hydrolyze proteins,
       fats, polysaccharides, and nucleic acids
     • Lysosomal enzymes work best in the acidic
       environment inside the lysosome




© 2011 Pearson Education, Inc.
• Some types of cell can engulf another cell by
       phagocytosis; this forms a food vacuole
     • A lysosome fuses with the food vacuole and
       digests the molecules
     • Lysosomes also use enzymes to recycle the
       cell’s own organelles and macromolecules, a
       process called autophagy




© 2011 Pearson Education, Inc.
Figure 6.13




                                                                               Vesicle containing
                                                 1 µm
                                   Nucleus                                     two damaged           1 µm
                                                                               organelles




                                                            Mitochondrion
                                                            fragment

       Lysosome                                             Peroxisome
                                                            fragment


                      Digestive
                      enzymes
                                                                         Lysosome

          Lysosome
  Plasma membrane                                        Peroxisome

                                             Digestion

                    Food vacuole                                                   Mitochondrion    Digestion
                                                                         Vesicle

 (a) Phagocytosis                                        (b) Autophagy
Figure 6.13a
                                                               1 µm
                                                 Nucleus




                     Lysosome




                                    Digestive
                                    enzymes

                       Lysosome
               Plasma membrane
                                                           Digestion

                                  Food vacuole



               (a) Phagocytosis
Vacuoles: Diverse Maintenance
Compartments
     • A plant cell or fungal cell may have one or
       several vacuoles, derived from endoplasmic
       reticulum and Golgi apparatus




© 2011 Pearson Education, Inc.
• Food vacuoles are formed by phagocytosis
     • Contractile vacuoles, found in many freshwater
       protists, pump excess water out of cells
     • Central vacuoles, found in many mature plant
       cells, hold organic compounds and water




© 2011 Pearson Education, Inc.
Figure 6.14




                          Central vacuole

                                      Cytosol




                                      Central
              Nucleus                 vacuole
              Cell wall
              Chloroplast
                                                5 µm
Figure 6.14a




                             Cytosol




                             Central
               Nucleus       vacuole
               Cell wall
               Chloroplast
                                       5 µm
The Endomembrane System: A Review
     • The endomembrane system is a complex and
       dynamic player in the cell’s compartmental
       organization




© 2011 Pearson Education, Inc.
Figure 6.15-1



                Nucleus




                Rough ER
  Smooth ER




                     Plasma
                     membrane
Figure 6.15-2



                              Nucleus




                              Rough ER
  Smooth ER

                cis Golgi




                                   Plasma
                                   membrane
                trans Golgi
Figure 6.15-3



                              Nucleus




                              Rough ER
  Smooth ER

                cis Golgi




                                   Plasma
                                   membrane
                trans Golgi
Concept 6.5: Mitochondria and chloroplasts
change energy from one form to another
     • Mitochondria are the sites of cellular respiration,
       a metabolic process that uses oxygen to
       generate ATP
     • Chloroplasts, found in plants and algae, are the
       sites of photosynthesis
     • Peroxisomes are oxidative organelles




© 2011 Pearson Education, Inc.
The Evolutionary Origins of Mitochondria
and Chloroplasts
     • Mitochondria and chloroplasts have similarities
       with bacteria
                – Enveloped by a double membrane
                – Contain free ribosomes and circular DNA
                  molecules
                – Grow and reproduce somewhat independently
                  in cells




© 2011 Pearson Education, Inc.
• The Endosymbiont theory
                – An early ancestor of eukaryotic cells engulfed
                  a nonphotosynthetic prokaryotic cell, which
                  formed an endosymbiont relationship with its
                  host
                – The host cell and endosymbiont merged into
                  a single organism, a eukaryotic cell with a
                  mitochondrion
                – At least one of these cells may have taken up
                  a photosynthetic prokaryote, becoming the
                  ancestor of cells that contain chloroplasts

© 2011 Pearson Education, Inc.
Figure 6.16
                                   Endoplasmic              Nucleus
                                   reticulum
              Engulfing of oxygen-    Nuclear
              using nonphotosynthetic envelope
              prokaryote, which
              becomes a mitochondrion

                Mitochondrion                      Ancestor of
                                                   eukaryotic cells
                                                   (host cell)

                                                        Engulfing of
                                                        photosynthetic
                                                        prokaryote
                                        At least
                    Nonphotosynthetic   one cell          Chloroplast
                    eukaryote




                                 Mitochondrion
                                          Photosynthetic eukaryote
Mitochondria: Chemical Energy Conversion
     • Mitochondria are in nearly all eukaryotic cells
     • They have a smooth outer membrane and an
       inner membrane folded into cristae
     • The inner membrane creates two compartments:
       intermembrane space and mitochondrial matrix
     • Some metabolic steps of cellular respiration are
       catalyzed in the mitochondrial matrix
     • Cristae present a large surface area for enzymes
       that synthesize ATP


© 2011 Pearson Education, Inc.
Figure 6.17




                                                                                          10 µm
                    Intermembrane space
                                      Outer                                        Mitochondria
                                    membrane


                                        DNA

                                  Inner
Free                                                      Mitochondrial
                                membrane
ribosomes                                                 DNA
in the                           Cristae
mitochondrial                                                   Nuclear DNA
                                  Matrix
matrix
                                               0.1 µm
 (a) Diagram and TEM of mitochondrion                   (b) Network of mitochondria in a protist
                                                            cell (LM)
Figure 6.17a




                    Intermembrane space
                                     Outer
                                    membrane



                                    DNA

                                  Inner
Free                            membrane
ribosomes
in the                           Cristae
mitochondrial
                                  Matrix
matrix                                         0.1 µm
 (a) Diagram and TEM of mitochondrion
Figure 6.17aa




                      Outer
                    membrane




                  Inner
                membrane
                Cristae

                 Matrix
                               0.1 µm
Figure 6.17b




                                                 10 µm


                                          Mitochondria




                 Mitochondrial
                 DNA


                       Nuclear DNA

               (b) Network of mitochondria in a protist
                   cell (LM)
Chloroplasts: Capture of Light Energy
     • Chloroplasts contain the green pigment
       chlorophyll, as well as enzymes and other
       molecules that function in photosynthesis
     • Chloroplasts are found in leaves and other green
       organs of plants and in algae




© 2011 Pearson Education, Inc.
• Chloroplast structure includes
                – Thylakoids, membranous sacs, stacked to
                  form a granum
                – Stroma, the internal fluid
     • The chloroplast is one of a group of plant
       organelles, called plastids




© 2011 Pearson Education, Inc.
Figure 6.18




                       Ribosomes                                                         50 µm
                                        Stroma

                                     Inner and outer
                                       membranes
                                        Granum



                                                                Chloroplasts
                                                                (red)
                                    DNA
            Thylakoid    Intermembrane space           1 µm
 (a) Diagram and TEM of chloroplast                           (b) Chloroplasts in an algal cell
Figure 6.18a




                       Ribosomes
                                        Stroma

                                    Inner and outer
                                      membranes
                                       Granum




                                    DNA
            Thylakoid    Intermembrane space          1 µm
 (a) Diagram and TEM of chloroplast
Figure 6.18aa




                   Stroma

                Inner and outer
                  membranes
                   Granum




                                  1 µm
Figure 6.18b




                                          50 µm




                Chloroplasts
                (red)


               (b) Chloroplasts in an algal cell
Peroxisomes: Oxidation
     • Peroxisomes are specialized metabolic
       compartments bounded by a single membrane
     • Peroxisomes produce hydrogen peroxide and
       convert it to water
     • Peroxisomes perform reactions with many
       different functions
     • How peroxisomes are related to other organelles
       is still unknown



© 2011 Pearson Education, Inc.
Figure 6.19



                             1 µm
               Chloroplast
              Peroxisome
                       Mitochondrion
Concept 6.6: The cytoskeleton is a network
of fibers that organizes structures and
activities in the cell
     • The cytoskeleton is a network of fibers
       extending throughout the cytoplasm
     • It organizes the cell’s structures and activities,
       anchoring many organelles
     • It is composed of three types of molecular
       structures
                – Microtubules
                – Microfilaments
                – Intermediate filaments
© 2011 Pearson Education, Inc.
Roles of the Cytoskeleton:
Support and Motility
     • The cytoskeleton helps to support the cell and
       maintain its shape
     • It interacts with motor proteins to produce
       motility
     • Inside the cell, vesicles can travel along
       “monorails” provided by the cytoskeleton
     • Recent evidence suggests that the cytoskeleton
       may help regulate biochemical activities



© 2011 Pearson Education, Inc.
Figure 6.21

                                  Vesicle
                     ATP
                                            Receptor for
                                            motor protein



                        Motor protein Microtubule
                        (ATP powered) of cytoskeleton
              (a)

              Microtubule   Vesicles                        0.25 µm




              (b)
Components of the Cytoskeleton
     • Three main types of fibers make up the
       cytoskeleton
                – Microtubules are the thickest of the three
                  components of the cytoskeleton
                – Microfilaments, also called actin filaments, are
                  the thinnest components
                – Intermediate filaments are fibers with
                  diameters in a middle range




© 2011 Pearson Education, Inc.
Table 6.1




                             10 µ m                    10 µ m                         5 µm




            Column of tubulin dimers
                                                                Keratin proteins
                                       Actin subunit                Fibrous subunit (keratins
                              25 nm                                 coiled together)

                                                       7 nm                          8−12 nm

            α    β   Tubulin dimer
Table 6.1a




                                   10 µm




                 Column of tubulin dimers


                                    25 nm




             α        β   Tubulin dimer
Table 6.1b




                             10 µm




             Actin subunit


                             7 nm
Table 6.1c




                                   5 µm




             Keratin proteins
                Fibrous subunit (keratins
                coiled together)
                                   8−12 nm
Microtubules
     • Microtubules are hollow rods about 25 nm in
       diameter and about 200 nm to 25 microns long
     • Functions of microtubules
                – Shaping the cell
                – Guiding movement of organelles
                – Separating chromosomes during cell division




© 2011 Pearson Education, Inc.
Centrosomes and Centrioles
     • In many cells, microtubules grow out from a
       centrosome near the nucleus
     • The centrosome is a “microtubule-organizing
       center”
     • In animal cells, the centrosome has a pair of
       centrioles, each with nine triplets of
       microtubules arranged in a ring




© 2011 Pearson Education, Inc.
Figure 6.22




        Centrosome                                  Microtubule


                                 Centrioles
                                                            0.25 µm




              Longitudinal
              section of
              one centriole




                              Microtubules    Cross section
                                              of the other centriole
Cilia and Flagella
     • Microtubules control the beating of cilia and
       flagella, locomotor appendages of some cells
     • Cilia and flagella differ in their beating patterns




© 2011 Pearson Education, Inc.
Figure 6.23
                    Direction of swimming




              (a) Motion of flagella
                                                  5 µm

               Direction of organism’s movement



               Power stroke Recovery stroke




              (b) Motion of cilia
                                                  15 µm
• Cilia and flagella share a common structure
                – A core of microtubules sheathed by the plasma
                  membrane
                – A basal body that anchors the cilium or
                  flagellum
                – A motor protein called dynein, which drives the
                  bending movements of a cilium or flagellum




© 2011 Pearson Education, Inc.
Animation: Cilia and Flagella
                                 Right-click slide / select “Play”

© 2011 Pearson Education, Inc.
Figure 6.24
                                0.1 µm                     Outer microtubule   Plasma membrane
                                                           doublet
                                                            Dynein proteins
                                                            Central
                                                            microtubule
                                                            Radial
                                                            spoke
                 Microtubules                               Cross-linking
                                                            proteins between
                                                            outer doublets
                                (b) Cross section of
                Plasma              motile cilium
                membrane
                Basal body



     0.5 µm                                     0.1 µm
 (a) Longitudinal section                                Triplet
     of motile cilium




                                (c) Cross section of
                                    basal body
Figure 6.24a




                               Microtubules



                               Plasma
                               membrane
                               Basal body



                   0.5 µm
               (a) Longitudinal section
                   of motile cilium
Figure 6.24b



  0.1 µm               Outer microtubule   Plasma membrane
                       doublet
                       Dynein proteins
                       Central
                       microtubule
                       Radial
                       spoke
                       Cross-linking
                       proteins between
                       outer doublets
(b) Cross section of
    motile cilium
Figure 6.24ba




                 0.1 µm                Outer microtubule
                                       doublet
                                       Dynein proteins
                                       Central
                                       microtubule
                                       Radial
                                       spoke
                                       Cross-linking
                                       proteins between
                                       outer doublets
                (b) Cross section of
                    motile cilium
Figure 6.24c




                              0.1 µm
                                       Triplet




               (c) Cross section of
                   basal body
• How dynein “walking” moves flagella and cilia
            − Dynein arms alternately grab, move, and release
              the outer microtubules
            – Protein cross-links limit sliding
            – Forces exerted by dynein arms cause doublets to
              curve, bending the cilium or flagellum




© 2011 Pearson Education, Inc.
Figure 6.25            Microtubule
                                                           ATP
                       doublets




                                  Dynein protein

              (a) Effect of unrestrained dynein movement

              Cross-linking proteins
                                                            ATP
              between outer doublets




                                     Anchorage
                                     in cell



              (b) Effect of cross-linking proteins


                                 1            3
                                     2




              (c) Wavelike motion
Figure 6.25a


               Microtubule
               doublets                             ATP




                         Dynein protein

       (a) Effect of unrestrained dynein movement
Figure 6.25b




 Cross-linking proteins
                                        ATP
 between outer doublets




                                                     1              3
                                                         2



                      Anchorage
                      in cell


 (b) Effect of cross-linking proteins         (c) Wavelike motion
Microfilaments (Actin Filaments)
     • Microfilaments are solid rods about 7 nm in
       diameter, built as a twisted double chain of actin
       subunits
     • The structural role of microfilaments is to bear
       tension, resisting pulling forces within the cell
     • They form a 3-D network called the cortex just
       inside the plasma membrane to help support the
       cell’s shape
     • Bundles of microfilaments make up the core of
       microvilli of intestinal cells

© 2011 Pearson Education, Inc.
Figure 6.26

                           Microvillus



               Plasma membrane



              Microfilaments (actin
              filaments)




              Intermediate filaments

                                         0.25 µm
• Microfilaments that function in cellular motility
       contain the protein myosin in addition to actin
     • In muscle cells, thousands of actin filaments are
       arranged parallel to one another
     • Thicker filaments composed of myosin
       interdigitate with the thinner actin fibers




© 2011 Pearson Education, Inc.
Figure 6.27

                 Muscle cell
                                                                  0.5 µm
               Actin
               filament
                Myosin
              filament
               Myosin
               head
              (a) Myosin motors in muscle cell contraction

                          Cortex (outer cytoplasm):
                          gel with actin network
                                                         100 µm
               Inner cytoplasm: sol
               with actin subunits




                                                      Extending
                                                      pseudopodium
              (b) Amoeboid movement




                      Chloroplast                            30 µm
              (c) Cytoplasmic streaming in plant cells
Figure 6.27a




                 Muscle cell
                                                              0.5 µm
               Actin
               filament
               Myosin
               filament
               Myosin
               head
               (a) Myosin motors in muscle cell contraction
Figure 6.27b




                        Cortex (outer cytoplasm):
                        gel with actin network
                                                        100 µm
               Inner cytoplasm: sol
               with actin subunits




                                                    Extending
                                                    pseudopodium

                (b) Amoeboid movement
Figure 6.27c




                      Chloroplast                         30 µm
               (c) Cytoplasmic streaming in plant cells
• Localized contraction brought about by actin and
       myosin also drives amoeboid movement
     • Pseudopodia (cellular extensions) extend and
       contract through the reversible assembly and
       contraction of actin subunits into microfilaments




© 2011 Pearson Education, Inc.
• Cytoplasmic streaming is a circular flow of
       cytoplasm within cells
     • This streaming speeds distribution of materials
       within the cell
     • In plant cells, actin-myosin interactions and sol-
       gel transformations drive cytoplasmic streaming




© 2011 Pearson Education, Inc.
Intermediate Filaments
     • Intermediate filaments range in diameter from
       8–12 nanometers, larger than microfilaments but
       smaller than microtubules
     • They support cell shape and fix organelles in
       place
     • Intermediate filaments are more permanent
       cytoskeleton fixtures than the other two classes




© 2011 Pearson Education, Inc.
Concept 6.7: Extracellular components and
connections between cells help coordinate
cellular activities
     • Most cells synthesize and secrete materials that
       are external to the plasma membrane
     • These extracellular structures include
                – Cell walls of plants
                – The extracellular matrix (ECM) of animal cells
                – Intercellular junctions



© 2011 Pearson Education, Inc.
Cell Walls of Plants
     • The cell wall is an extracellular structure that
       distinguishes plant cells from animal cells
     • Prokaryotes, fungi, and some protists also have
       cell walls
     • The cell wall protects the plant cell, maintains its
       shape, and prevents excessive uptake of water
     • Plant cell walls are made of cellulose fibers
       embedded in other polysaccharides and protein



© 2011 Pearson Education, Inc.
• Plant cell walls may have multiple layers
                – Primary cell wall: relatively thin and flexible
                – Middle lamella: thin layer between primary walls
                  of adjacent cells
                – Secondary cell wall (in some cells): added
                  between the plasma membrane and the primary
                  cell wall
     • Plasmodesmata are channels between adjacent
       plant cells




© 2011 Pearson Education, Inc.
Figure 6.28



                                     Secondary
                                     cell wall
                                     Primary
                                     cell wall
                                     Middle
                                     lamella


                            1 µm
                 Central vacuole
                           Cytosol
                         Plasma membrane
                          Plant cell walls



              Plasmodesmata
Figure 6.28a




                      Secondary
                      cell wall
                      Primary
                      cell wall
                      Middle
                      lamella



               1 µm
The Extracellular Matrix (ECM) of Animal
 Cells
     • Animal cells lack cell walls but are covered by an
       elaborate extracellular matrix (ECM)
     • The ECM is made up of glycoproteins such as
       collagen, proteoglycans, and fibronectin
     • ECM proteins bind to receptor proteins in the
       plasma membrane called integrins




© 2011 Pearson Education, Inc.
Figure 6.30




   Collagen                                                               Polysaccharide
               EXTRACELLULAR FLUID                                        molecule

                                                          Proteoglycan               Carbo-
                                                          complex                    hydrates

 Fibronectin                                                                               Core
                                                                                           protein


                                                        Integrins



                                                                                     Proteoglycan
                                                                                     molecule
 Plasma
 membrane                                                                Proteoglycan complex



                                Micro-      CYTOPLASM
                                filaments

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the cell

  • 1. LECTURE PRESENTATIONS For CAMPBELL BIOLOGY, NINTH EDITION Jane B. Reece, Lisa A. Urry, Michael L. Cain, Steven A. Wasserman, Peter V. Minorsky, Robert B. Jackson Chapter 6 A Tour of the Cell Lectures by Erin Barley Kathleen Fitzpatrick © 2011 Pearson Education, Inc.
  • 2. Overview: The Fundamental Units of Life • All organisms are made of cells • The cell is the simplest collection of matter that can be alive • Cell structure is correlated to cellular function • All cells are related by their descent from earlier cells © 2011 Pearson Education, Inc.
  • 3. Concept 6.1: Biologists use microscopes and the tools of biochemistry to study cells • Though usually too small to be seen by the unaided eye, cells can be complex © 2011 Pearson Education, Inc.
  • 4. Microscopy • Scientists use microscopes to visualize cells too small to see with the naked eye • In a light microscope (LM), visible light is passed through a specimen and then through glass lenses • Lenses refract (bend) the light, so that the image is magnified © 2011 Pearson Education, Inc.
  • 5. • Three important parameters of microscopy – Magnification, the ratio of an object’s image size to its real size – Resolution, the measure of the clarity of the image, or the minimum distance of two distinguishable points – Contrast, visible differences in parts of the sample © 2011 Pearson Education, Inc.
  • 6. Figure 6.2 10 m Human height 1m Length of some nerve and Unaided eye muscle cells 0.1 m Chicken egg 1 cm Frog egg 1 mm Light microscopy Human egg 100 µm Most plant and animal cells 10 µm Nucleus Most bacteria Electron microscopy Mitochondrion 1 µm Smallest bacteria Super- 100 nm Viruses resolution microscopy Ribosomes 10 nm Proteins Lipids 1 nm Small molecules 0.1 nm Atoms
  • 7. Figure 6.2a 10 m Human height 1m Length of some nerve and Unaided eye muscle cells 0.1 m Chicken egg 1 cm Frog egg 1 mm Human egg 100 µm
  • 8. Figure 6.2b 1 cm Frog egg 1 mm Human egg 100 µm Light microscopy Most plant and animal cells 10 µm Nucleus Most bacteria Mitochondrion 1 µm Electron microscopy Smallest bacteria Super- 100 nm Viruses resolution microscopy Ribosomes 10 nm Proteins Lipids 1 nm Small molecules 0.1 nm Atoms
  • 9. Figure 6.3 Light Microscopy (LM) Electron Microscopy (EM) Brightfield Confocal Longitudinal section Cross section (unstained specimen) of cilium of cilium Cilia 50 µm Brightfield (stained specimen) 50 µm 2 µm 2 µm Transmission electron Scanning electron microscopy (TEM) Deconvolution microscopy (SEM) Phase-contrast 10 µm Differential-interference- contrast (Nomarski) Super-resolution Fluorescence 1 µm 10 µm
  • 10. • LMs can magnify effectively to about 1,000 times the size of the actual specimen • Various techniques enhance contrast and enable cell components to be stained or labeled • Most subcellular structures, including organelles (membrane-enclosed compartments), are too small to be resolved by an LM © 2011 Pearson Education, Inc.
  • 11. • Two basic types of electron microscopes (EMs) are used to study subcellular structures • Scanning electron microscopes (SEMs) focus a beam of electrons onto the surface of a specimen, providing images that look 3-D • Transmission electron microscopes (TEMs) focus a beam of electrons through a specimen • TEMs are used mainly to study the internal structure of cells © 2011 Pearson Education, Inc.
  • 12. • Recent advances in light microscopy – Confocal microscopy and deconvolution microscopy provide sharper images of three- dimensional tissues and cells – New techniques for labeling cells improve resolution © 2011 Pearson Education, Inc.
  • 13. Cell Fractionation • Cell fractionation takes cells apart and separates the major organelles from one another • Centrifuges fractionate cells into their component parts • Cell fractionation enables scientists to determine the functions of organelles • Biochemistry and cytology help correlate cell function with structure © 2011 Pearson Education, Inc.
  • 14. Figure 6.4 TECHNIQUE Homogenization Tissue cells Homogenate Centrifuged at 1,000 g (1,000 times the Centrifugation force of gravity) for 10 min Supernatant poured into next tube Differential centrifugation 20,000 g 20 min 80,000 g 60 min Pellet rich in nuclei and cellular debris 150,000 g 3 hr Pellet rich in mitochondria (and chloro- plasts if cells are from a plant) Pellet rich in “microsomes” (pieces of plasma membranes and cells’ internal membranes) Pellet rich in ribosomes
  • 15. Figure 6.4a TECHNIQUE Homogenization Tissue cells Homogenate Centrifugation
  • 16. Figure 6.4b TECHNIQUE (cont.) Centrifuged at 1,000 g (1,000 times the force of gravity) for 10 min Supernatant poured into next tube Differential centrifugation 20,000 g 20 min 80,000 g 60 min Pellet rich in nuclei and cellular debris 150,000 g 3 hr Pellet rich in mitochondria (and chloro- plasts if cells are from a plant) Pellet rich in “microsomes” Pellet rich in ribosomes
  • 17. Concept 6.2: Eukaryotic cells have internal membranes that compartmentalize their functions • The basic structural and functional unit of every organism is one of two types of cells: prokaryotic or eukaryotic • Only organisms of the domains Bacteria and Archaea consist of prokaryotic cells • Protists, fungi, animals, and plants all consist of eukaryotic cells © 2011 Pearson Education, Inc.
  • 18. Comparing Prokaryotic and Eukaryotic Cells • Basic features of all cells – Plasma membrane – Semifluid substance called cytosol – Chromosomes (carry genes) – Ribosomes (make proteins) © 2011 Pearson Education, Inc.
  • 19. • Prokaryotic cells are characterized by having – No nucleus – DNA in an unbound region called the nucleoid – No membrane-bound organelles – Cytoplasm bound by the plasma membrane © 2011 Pearson Education, Inc.
  • 20. Figure 6.5 Fimbriae Nucleoid Ribosomes Plasma membrane Bacterial chromosome Cell wall Capsule 0.5 µm (a) A typical Flagella (b) A thin section rod-shaped through the bacterium bacterium Bacillus coagulans (TEM)
  • 21. Figure 6.5a 0.5 µm (b) A thin section through the bacterium Bacillus coagulans (TEM)
  • 22. • Eukaryotic cells are characterized by having – DNA in a nucleus that is bounded by a membranous nuclear envelope – Membrane-bound organelles – Cytoplasm in the region between the plasma membrane and nucleus • Eukaryotic cells are generally much larger than prokaryotic cells © 2011 Pearson Education, Inc.
  • 23. • The plasma membrane is a selective barrier that allows sufficient passage of oxygen, nutrients, and waste to service the volume of every cell • The general structure of a biological membrane is a double layer of phospholipids © 2011 Pearson Education, Inc.
  • 24. Figure 6.6 (a) TEM of a plasma Outside of cell membrane Inside of cell 0.1 µm Carbohydrate side chains Hydrophilic region Hydrophobic region Hydrophilic Phospholipid Proteins region (b) Structure of the plasma membrane
  • 25. Figure 6.6a Outside of cell Inside of cell 0.1 µm (a) TEM of a plasma membrane
  • 26. • Metabolic requirements set upper limits on the size of cells • The surface area to volume ratio of a cell is critical • As the surface area increases by a factor of n2, the volume increases by a factor of n3 • Small cells have a greater surface area relative to volume © 2011 Pearson Education, Inc.
  • 27. Figure 6.7 Surface area increases while total volume remains constant 5 1 1 Total surface area [sum of the surface areas (height × width) of all box 6 150 750 sides × number of boxes] Total volume [height × width × length × number of boxes] 1 125 125 Surface-to-volume (S-to-V) ratio [surface area ÷ volume] 6 1.2 6
  • 28. A Panoramic View of the Eukaryotic Cell • A eukaryotic cell has internal membranes that partition the cell into organelles • Plant and animal cells have most of the same organelles © 2011 Pearson Education, Inc.
  • 29. Figure 6.8a ENDOPLASMIC RETICULUM (ER) Nuclear Rough Smooth envelope Flagellum ER ER NUCLEUS Nucleolus Chromatin Centrosome Plasma membrane CYTOSKELETON: Microfilaments Intermediate filaments Microtubules Ribosomes Microvilli Golgi apparatus Peroxisome Mitochondrion Lysosome
  • 30. Figure 6.8c Nuclear Rough envelope endoplasmic NUCLEUS reticulum Smooth Nucleolus endoplasmic reticulum Chromatin Ribosomes Central vacuole Golgi apparatus Microfilaments Intermediate CYTOSKELETON filaments Microtubules Mitochondrion Peroxisome Plasma membrane Chloroplast Cell wall Plasmodesmata Wall of adjacent cell
  • 31. Concept 6.3: The eukaryotic cell’s genetic instructions are housed in the nucleus and carried out by the ribosomes • The nucleus contains most of the DNA in a eukaryotic cell • Ribosomes use the information from the DNA to make proteins © 2011 Pearson Education, Inc.
  • 32. The Nucleus: Information Central • The nucleus contains most of the cell’s genes and is usually the most conspicuous organelle • The nuclear envelope encloses the nucleus, separating it from the cytoplasm • The nuclear membrane is a double membrane; each membrane consists of a lipid bilayer © 2011 Pearson Education, Inc.
  • 33. Figure 6.9 1 µm Nucleus Nucleolus Chromatin Nuclear envelope: Inner membrane Outer membrane Nuclear pore Rough ER Pore complex Surface of nuclear envelope Ribosome Close-up 0.25 µm of nuclear Chromatin envelope 1 µm Pore complexes (TEM) Nuclear lamina (TEM)
  • 34. Figure 6.9a Nucleus Nucleolus Chromatin Nuclear envelope: Inner membrane Outer membrane Nuclear pore Rough ER Pore complex Ribosome Close-up of nuclear Chromatin envelope
  • 35. Figure 6.9b 1 µm Nuclear envelope: Inner membrane Outer membrane Nuclear pore Surface of nuclear envelope
  • 36. Figure 6.9c 0.25 µm Pore complexes (TEM)
  • 37. Figure 6.9d 1 µm Nuclear lamina (TEM)
  • 38. • Pores regulate the entry and exit of molecules from the nucleus • The shape of the nucleus is maintained by the nuclear lamina, which is composed of protein © 2011 Pearson Education, Inc.
  • 39. • In the nucleus, DNA is organized into discrete units called chromosomes • Each chromosome is composed of a single DNA molecule associated with proteins • The DNA and proteins of chromosomes are together called chromatin • Chromatin condenses to form discrete chromosomes as a cell prepares to divide • The nucleolus is located within the nucleus and is the site of ribosomal RNA (rRNA) synthesis © 2011 Pearson Education, Inc.
  • 40. Ribosomes: Protein Factories • Ribosomes are particles made of ribosomal RNA and protein • Ribosomes carry out protein synthesis in two locations – In the cytosol (free ribosomes) – On the outside of the endoplasmic reticulum or the nuclear envelope (bound ribosomes) © 2011 Pearson Education, Inc.
  • 41. Figure 6.10 0.25 µm Free ribosomes in cytosol Endoplasmic reticulum (ER) Ribosomes bound to ER Large subunit Small subunit TEM showing ER and ribosomes Diagram of a ribosome
  • 42. Figure 6.10a 0.25 µm Free ribosomes in cytosol Endoplasmic reticulum (ER) Ribosomes bound to ER TEM showing ER and ribosomes
  • 43. Concept 6.4: The endomembrane system regulates protein traffic and performs metabolic functions in the cell • Components of the endomembrane system – Nuclear envelope – Endoplasmic reticulum – Golgi apparatus – Lysosomes – Vacuoles – Plasma membrane • These components are either continuous or connected via transfer by vesicles © 2011 Pearson Education, Inc.
  • 44. The Endoplasmic Reticulum: Biosynthetic Factory • The endoplasmic reticulum (ER) accounts for more than half of the total membrane in many eukaryotic cells • The ER membrane is continuous with the nuclear envelope • There are two distinct regions of ER – Smooth ER, which lacks ribosomes – Rough ER, surface is studded with ribosomes © 2011 Pearson Education, Inc.
  • 45. Figure 6.11 Smooth ER Nuclear envelope Rough ER ER lumen Cisternae Transitional ER Ribosomes Transport vesicle 200 nm Smooth ER Rough ER
  • 46. Figure 6.11a Smooth ER Rough ER Nuclear envelope ER lumen Cisternae Transitional ER Ribosomes Transport vesicle
  • 47. Figure 6.11b Smooth ER Rough ER 200 nm
  • 48. Functions of Smooth ER • The smooth ER – Synthesizes lipids – Metabolizes carbohydrates – Detoxifies drugs and poisons – Stores calcium ions © 2011 Pearson Education, Inc.
  • 49. Functions of Rough ER • The rough ER – Has bound ribosomes, which secrete glycoproteins (proteins covalently bonded to carbohydrates) – Distributes transport vesicles, proteins surrounded by membranes – Is a membrane factory for the cell © 2011 Pearson Education, Inc.
  • 50. The Golgi Apparatus: Shipping and Receiving Center • The Golgi apparatus consists of flattened membranous sacs called cisternae • Functions of the Golgi apparatus – Modifies products of the ER – Manufactures certain macromolecules – Sorts and packages materials into transport vesicles © 2011 Pearson Education, Inc.
  • 51. Figure 6.12 cis face (“receiving” side of 0.1 µm Golgi apparatus) Cisternae trans face (“shipping” side of TEM of Golgi apparatus Golgi apparatus)
  • 52. Figure 6.12a 0.1 µm TEM of Golgi apparatus
  • 53. Lysosomes: Digestive Compartments • A lysosome is a membranous sac of hydrolytic enzymes that can digest macromolecules • Lysosomal enzymes can hydrolyze proteins, fats, polysaccharides, and nucleic acids • Lysosomal enzymes work best in the acidic environment inside the lysosome © 2011 Pearson Education, Inc.
  • 54. • Some types of cell can engulf another cell by phagocytosis; this forms a food vacuole • A lysosome fuses with the food vacuole and digests the molecules • Lysosomes also use enzymes to recycle the cell’s own organelles and macromolecules, a process called autophagy © 2011 Pearson Education, Inc.
  • 55. Figure 6.13 Vesicle containing 1 µm Nucleus two damaged 1 µm organelles Mitochondrion fragment Lysosome Peroxisome fragment Digestive enzymes Lysosome Lysosome Plasma membrane Peroxisome Digestion Food vacuole Mitochondrion Digestion Vesicle (a) Phagocytosis (b) Autophagy
  • 56. Figure 6.13a 1 µm Nucleus Lysosome Digestive enzymes Lysosome Plasma membrane Digestion Food vacuole (a) Phagocytosis
  • 57. Vacuoles: Diverse Maintenance Compartments • A plant cell or fungal cell may have one or several vacuoles, derived from endoplasmic reticulum and Golgi apparatus © 2011 Pearson Education, Inc.
  • 58. • Food vacuoles are formed by phagocytosis • Contractile vacuoles, found in many freshwater protists, pump excess water out of cells • Central vacuoles, found in many mature plant cells, hold organic compounds and water © 2011 Pearson Education, Inc.
  • 59. Figure 6.14 Central vacuole Cytosol Central Nucleus vacuole Cell wall Chloroplast 5 µm
  • 60. Figure 6.14a Cytosol Central Nucleus vacuole Cell wall Chloroplast 5 µm
  • 61. The Endomembrane System: A Review • The endomembrane system is a complex and dynamic player in the cell’s compartmental organization © 2011 Pearson Education, Inc.
  • 62. Figure 6.15-1 Nucleus Rough ER Smooth ER Plasma membrane
  • 63. Figure 6.15-2 Nucleus Rough ER Smooth ER cis Golgi Plasma membrane trans Golgi
  • 64. Figure 6.15-3 Nucleus Rough ER Smooth ER cis Golgi Plasma membrane trans Golgi
  • 65. Concept 6.5: Mitochondria and chloroplasts change energy from one form to another • Mitochondria are the sites of cellular respiration, a metabolic process that uses oxygen to generate ATP • Chloroplasts, found in plants and algae, are the sites of photosynthesis • Peroxisomes are oxidative organelles © 2011 Pearson Education, Inc.
  • 66. The Evolutionary Origins of Mitochondria and Chloroplasts • Mitochondria and chloroplasts have similarities with bacteria – Enveloped by a double membrane – Contain free ribosomes and circular DNA molecules – Grow and reproduce somewhat independently in cells © 2011 Pearson Education, Inc.
  • 67. • The Endosymbiont theory – An early ancestor of eukaryotic cells engulfed a nonphotosynthetic prokaryotic cell, which formed an endosymbiont relationship with its host – The host cell and endosymbiont merged into a single organism, a eukaryotic cell with a mitochondrion – At least one of these cells may have taken up a photosynthetic prokaryote, becoming the ancestor of cells that contain chloroplasts © 2011 Pearson Education, Inc.
  • 68. Figure 6.16 Endoplasmic Nucleus reticulum Engulfing of oxygen- Nuclear using nonphotosynthetic envelope prokaryote, which becomes a mitochondrion Mitochondrion Ancestor of eukaryotic cells (host cell) Engulfing of photosynthetic prokaryote At least Nonphotosynthetic one cell Chloroplast eukaryote Mitochondrion Photosynthetic eukaryote
  • 69. Mitochondria: Chemical Energy Conversion • Mitochondria are in nearly all eukaryotic cells • They have a smooth outer membrane and an inner membrane folded into cristae • The inner membrane creates two compartments: intermembrane space and mitochondrial matrix • Some metabolic steps of cellular respiration are catalyzed in the mitochondrial matrix • Cristae present a large surface area for enzymes that synthesize ATP © 2011 Pearson Education, Inc.
  • 70. Figure 6.17 10 µm Intermembrane space Outer Mitochondria membrane DNA Inner Free Mitochondrial membrane ribosomes DNA in the Cristae mitochondrial Nuclear DNA Matrix matrix 0.1 µm (a) Diagram and TEM of mitochondrion (b) Network of mitochondria in a protist cell (LM)
  • 71. Figure 6.17a Intermembrane space Outer membrane DNA Inner Free membrane ribosomes in the Cristae mitochondrial Matrix matrix 0.1 µm (a) Diagram and TEM of mitochondrion
  • 72. Figure 6.17aa Outer membrane Inner membrane Cristae Matrix 0.1 µm
  • 73. Figure 6.17b 10 µm Mitochondria Mitochondrial DNA Nuclear DNA (b) Network of mitochondria in a protist cell (LM)
  • 74. Chloroplasts: Capture of Light Energy • Chloroplasts contain the green pigment chlorophyll, as well as enzymes and other molecules that function in photosynthesis • Chloroplasts are found in leaves and other green organs of plants and in algae © 2011 Pearson Education, Inc.
  • 75. • Chloroplast structure includes – Thylakoids, membranous sacs, stacked to form a granum – Stroma, the internal fluid • The chloroplast is one of a group of plant organelles, called plastids © 2011 Pearson Education, Inc.
  • 76. Figure 6.18 Ribosomes 50 µm Stroma Inner and outer membranes Granum Chloroplasts (red) DNA Thylakoid Intermembrane space 1 µm (a) Diagram and TEM of chloroplast (b) Chloroplasts in an algal cell
  • 77. Figure 6.18a Ribosomes Stroma Inner and outer membranes Granum DNA Thylakoid Intermembrane space 1 µm (a) Diagram and TEM of chloroplast
  • 78. Figure 6.18aa Stroma Inner and outer membranes Granum 1 µm
  • 79. Figure 6.18b 50 µm Chloroplasts (red) (b) Chloroplasts in an algal cell
  • 80. Peroxisomes: Oxidation • Peroxisomes are specialized metabolic compartments bounded by a single membrane • Peroxisomes produce hydrogen peroxide and convert it to water • Peroxisomes perform reactions with many different functions • How peroxisomes are related to other organelles is still unknown © 2011 Pearson Education, Inc.
  • 81. Figure 6.19 1 µm Chloroplast Peroxisome Mitochondrion
  • 82. Concept 6.6: The cytoskeleton is a network of fibers that organizes structures and activities in the cell • The cytoskeleton is a network of fibers extending throughout the cytoplasm • It organizes the cell’s structures and activities, anchoring many organelles • It is composed of three types of molecular structures – Microtubules – Microfilaments – Intermediate filaments © 2011 Pearson Education, Inc.
  • 83. Roles of the Cytoskeleton: Support and Motility • The cytoskeleton helps to support the cell and maintain its shape • It interacts with motor proteins to produce motility • Inside the cell, vesicles can travel along “monorails” provided by the cytoskeleton • Recent evidence suggests that the cytoskeleton may help regulate biochemical activities © 2011 Pearson Education, Inc.
  • 84. Figure 6.21 Vesicle ATP Receptor for motor protein Motor protein Microtubule (ATP powered) of cytoskeleton (a) Microtubule Vesicles 0.25 µm (b)
  • 85. Components of the Cytoskeleton • Three main types of fibers make up the cytoskeleton – Microtubules are the thickest of the three components of the cytoskeleton – Microfilaments, also called actin filaments, are the thinnest components – Intermediate filaments are fibers with diameters in a middle range © 2011 Pearson Education, Inc.
  • 86. Table 6.1 10 µ m 10 µ m 5 µm Column of tubulin dimers Keratin proteins Actin subunit Fibrous subunit (keratins 25 nm coiled together) 7 nm 8−12 nm α β Tubulin dimer
  • 87. Table 6.1a 10 µm Column of tubulin dimers 25 nm α β Tubulin dimer
  • 88. Table 6.1b 10 µm Actin subunit 7 nm
  • 89. Table 6.1c 5 µm Keratin proteins Fibrous subunit (keratins coiled together) 8−12 nm
  • 90. Microtubules • Microtubules are hollow rods about 25 nm in diameter and about 200 nm to 25 microns long • Functions of microtubules – Shaping the cell – Guiding movement of organelles – Separating chromosomes during cell division © 2011 Pearson Education, Inc.
  • 91. Centrosomes and Centrioles • In many cells, microtubules grow out from a centrosome near the nucleus • The centrosome is a “microtubule-organizing center” • In animal cells, the centrosome has a pair of centrioles, each with nine triplets of microtubules arranged in a ring © 2011 Pearson Education, Inc.
  • 92. Figure 6.22 Centrosome Microtubule Centrioles 0.25 µm Longitudinal section of one centriole Microtubules Cross section of the other centriole
  • 93. Cilia and Flagella • Microtubules control the beating of cilia and flagella, locomotor appendages of some cells • Cilia and flagella differ in their beating patterns © 2011 Pearson Education, Inc.
  • 94. Figure 6.23 Direction of swimming (a) Motion of flagella 5 µm Direction of organism’s movement Power stroke Recovery stroke (b) Motion of cilia 15 µm
  • 95. • Cilia and flagella share a common structure – A core of microtubules sheathed by the plasma membrane – A basal body that anchors the cilium or flagellum – A motor protein called dynein, which drives the bending movements of a cilium or flagellum © 2011 Pearson Education, Inc.
  • 96. Animation: Cilia and Flagella Right-click slide / select “Play” © 2011 Pearson Education, Inc.
  • 97. Figure 6.24 0.1 µm Outer microtubule Plasma membrane doublet Dynein proteins Central microtubule Radial spoke Microtubules Cross-linking proteins between outer doublets (b) Cross section of Plasma motile cilium membrane Basal body 0.5 µm 0.1 µm (a) Longitudinal section Triplet of motile cilium (c) Cross section of basal body
  • 98. Figure 6.24a Microtubules Plasma membrane Basal body 0.5 µm (a) Longitudinal section of motile cilium
  • 99. Figure 6.24b 0.1 µm Outer microtubule Plasma membrane doublet Dynein proteins Central microtubule Radial spoke Cross-linking proteins between outer doublets (b) Cross section of motile cilium
  • 100. Figure 6.24ba 0.1 µm Outer microtubule doublet Dynein proteins Central microtubule Radial spoke Cross-linking proteins between outer doublets (b) Cross section of motile cilium
  • 101. Figure 6.24c 0.1 µm Triplet (c) Cross section of basal body
  • 102. • How dynein “walking” moves flagella and cilia − Dynein arms alternately grab, move, and release the outer microtubules – Protein cross-links limit sliding – Forces exerted by dynein arms cause doublets to curve, bending the cilium or flagellum © 2011 Pearson Education, Inc.
  • 103. Figure 6.25 Microtubule ATP doublets Dynein protein (a) Effect of unrestrained dynein movement Cross-linking proteins ATP between outer doublets Anchorage in cell (b) Effect of cross-linking proteins 1 3 2 (c) Wavelike motion
  • 104. Figure 6.25a Microtubule doublets ATP Dynein protein (a) Effect of unrestrained dynein movement
  • 105. Figure 6.25b Cross-linking proteins ATP between outer doublets 1 3 2 Anchorage in cell (b) Effect of cross-linking proteins (c) Wavelike motion
  • 106. Microfilaments (Actin Filaments) • Microfilaments are solid rods about 7 nm in diameter, built as a twisted double chain of actin subunits • The structural role of microfilaments is to bear tension, resisting pulling forces within the cell • They form a 3-D network called the cortex just inside the plasma membrane to help support the cell’s shape • Bundles of microfilaments make up the core of microvilli of intestinal cells © 2011 Pearson Education, Inc.
  • 107. Figure 6.26 Microvillus Plasma membrane Microfilaments (actin filaments) Intermediate filaments 0.25 µm
  • 108. • Microfilaments that function in cellular motility contain the protein myosin in addition to actin • In muscle cells, thousands of actin filaments are arranged parallel to one another • Thicker filaments composed of myosin interdigitate with the thinner actin fibers © 2011 Pearson Education, Inc.
  • 109. Figure 6.27 Muscle cell 0.5 µm Actin filament Myosin filament Myosin head (a) Myosin motors in muscle cell contraction Cortex (outer cytoplasm): gel with actin network 100 µm Inner cytoplasm: sol with actin subunits Extending pseudopodium (b) Amoeboid movement Chloroplast 30 µm (c) Cytoplasmic streaming in plant cells
  • 110. Figure 6.27a Muscle cell 0.5 µm Actin filament Myosin filament Myosin head (a) Myosin motors in muscle cell contraction
  • 111. Figure 6.27b Cortex (outer cytoplasm): gel with actin network 100 µm Inner cytoplasm: sol with actin subunits Extending pseudopodium (b) Amoeboid movement
  • 112. Figure 6.27c Chloroplast 30 µm (c) Cytoplasmic streaming in plant cells
  • 113. • Localized contraction brought about by actin and myosin also drives amoeboid movement • Pseudopodia (cellular extensions) extend and contract through the reversible assembly and contraction of actin subunits into microfilaments © 2011 Pearson Education, Inc.
  • 114. • Cytoplasmic streaming is a circular flow of cytoplasm within cells • This streaming speeds distribution of materials within the cell • In plant cells, actin-myosin interactions and sol- gel transformations drive cytoplasmic streaming © 2011 Pearson Education, Inc.
  • 115. Intermediate Filaments • Intermediate filaments range in diameter from 8–12 nanometers, larger than microfilaments but smaller than microtubules • They support cell shape and fix organelles in place • Intermediate filaments are more permanent cytoskeleton fixtures than the other two classes © 2011 Pearson Education, Inc.
  • 116. Concept 6.7: Extracellular components and connections between cells help coordinate cellular activities • Most cells synthesize and secrete materials that are external to the plasma membrane • These extracellular structures include – Cell walls of plants – The extracellular matrix (ECM) of animal cells – Intercellular junctions © 2011 Pearson Education, Inc.
  • 117. Cell Walls of Plants • The cell wall is an extracellular structure that distinguishes plant cells from animal cells • Prokaryotes, fungi, and some protists also have cell walls • The cell wall protects the plant cell, maintains its shape, and prevents excessive uptake of water • Plant cell walls are made of cellulose fibers embedded in other polysaccharides and protein © 2011 Pearson Education, Inc.
  • 118. • Plant cell walls may have multiple layers – Primary cell wall: relatively thin and flexible – Middle lamella: thin layer between primary walls of adjacent cells – Secondary cell wall (in some cells): added between the plasma membrane and the primary cell wall • Plasmodesmata are channels between adjacent plant cells © 2011 Pearson Education, Inc.
  • 119. Figure 6.28 Secondary cell wall Primary cell wall Middle lamella 1 µm Central vacuole Cytosol Plasma membrane Plant cell walls Plasmodesmata
  • 120. Figure 6.28a Secondary cell wall Primary cell wall Middle lamella 1 µm
  • 121. The Extracellular Matrix (ECM) of Animal Cells • Animal cells lack cell walls but are covered by an elaborate extracellular matrix (ECM) • The ECM is made up of glycoproteins such as collagen, proteoglycans, and fibronectin • ECM proteins bind to receptor proteins in the plasma membrane called integrins © 2011 Pearson Education, Inc.
  • 122. Figure 6.30 Collagen Polysaccharide EXTRACELLULAR FLUID molecule Proteoglycan Carbo- complex hydrates Fibronectin Core protein Integrins Proteoglycan molecule Plasma membrane Proteoglycan complex Micro- CYTOPLASM filaments

Editor's Notes

  1. For the Discovery Video Cells, go to Animation and Video Files.
  2. Figure 6.2 The size range of cells.
  3. Figure 6.2 The size range of cells.
  4. Figure 6.2 The size range of cells.
  5. Figure 6.3 Exploring: Microscopy
  6. Figure 6.4 Research Method: Cell Fractionation
  7. Figure 6.4 Research Method: Cell Fractionation
  8. Figure 6.4 Research Method: Cell Fractionation
  9. Figure 6.5 A prokaryotic cell.
  10. Figure 6.5 A prokaryotic cell.
  11. Figure 6.6 The plasma membrane.
  12. Figure 6.6 The plasma membrane.
  13. Figure 6.7 Geometric relationships between surface area and volume.
  14. Figure 6.8 Exploring: Eukaryotic Cells
  15. Figure 6.8 Exploring: Eukaryotic Cells
  16. Figure 6.9 The nucleus and its envelope.
  17. Figure 6.9 The nucleus and its envelope.
  18. Figure 6.9 The nucleus and its envelope.
  19. Figure 6.9 The nucleus and its envelope.
  20. Figure 6.9 The nucleus and its envelope.
  21. For the Cell Biology Video Staining of Endoplasmic Reticulum, go to Animation and Video Files.
  22. Figure 6.10 Ribosomes.
  23. Figure 6.10 Ribosomes.
  24. For the Cell Biology Video ER and Mitochondria in Leaf Cells, go to Animation and Video Files.
  25. Figure 6.11 Endoplasmic reticulum (ER).
  26. Figure 6.11 Endoplasmic reticulum (ER).
  27. Figure 6.11 Endoplasmic reticulum (ER).
  28. For the Cell Biology Video ER to Golgi Traffic, go to Animation and Video Files. For the Cell Biology Video Golgi Complex in 3D, go to Animation and Video Files. For the Cell Biology Video Secretion From the Golgi, go to Animation and Video Files.
  29. Figure 6.12 The Golgi apparatus.
  30. Figure 6.12 The Golgi apparatus.
  31. For the Cell Biology Video Phagocytosis in Action, go to Animation and Video Files.
  32. Figure 6.13 Lysosomes.
  33. Figure 6.13 Lysosomes.
  34. Figure 6.14 The plant cell vacuole.
  35. Figure 6.14 The plant cell vacuole.
  36. Figure 6.15 Review: relationships among organelles of the endomembrane system.
  37. Figure 6.15 Review: relationships among organelles of the endomembrane system.
  38. Figure 6.15 Review: relationships among organelles of the endomembrane system.
  39. For the Cell Biology Video ER and Mitochondria in Leaf Cells, go to Animation and Video Files. For the Cell Biology Video Mitochondria in 3D, go to Animation and Video Files. For the Cell Biology Video Chloroplast Movement, go to Animation and Video Files.
  40. Figure 6.16 The endosymbiont theory of the origin of mitochondria and chloroplasts in eukaryotic cells.
  41. Figure 6.17 The mitochondrion, site of cellular respiration.
  42. Figure 6.17 The mitochondrion, site of cellular respiration.
  43. Figure 6.17 The mitochondrion, site of cellular respiration.
  44. Figure 6.17 The mitochondrion, site of cellular respiration.
  45. Figure 6.18 The chloroplast, site of photosynthesis.
  46. Figure 6.18 The chloroplast, site of photosynthesis.
  47. Figure 6.18 The chloroplast, site of photosynthesis.
  48. Figure 6.18 The chloroplast, site of photosynthesis.
  49. Figure 6.19 A peroxisome.
  50. For the Cell Biology Video The Cytoskeleton in a Neuron Growth Cone, go to Animation and Video Files For the Cell Biology Video Cytoskeletal Protein Dynamics, go to Animation and Video Files.
  51. Figure 6.21 Motor proteins and the cytoskeleton.
  52. For the Cell Biology Video Actin Network in Crawling Cells, go to Animation and Video Files. For the Cell Biology Video Actin Visualization in Dendrites, go to Animation and Video Files.
  53. Table 6.1 The Structure and Function of the Cytoskeleton
  54. Table 6.1 The Structure and Function of the Cytoskeleton
  55. Table 6.1 The Structure and Function of the Cytoskeleton
  56. Table 6.1 The Structure and Function of the Cytoskeleton
  57. For the Cell Biology Video Transport Along Microtubules, go to Animation and Video Files. For the Cell Biology Video Movement of Organelles in Vivo, go to Animation and Video Files. For the Cell Biology Video Movement of Organelles in Vitro, go to Animation and Video Files.
  58. Figure 6.22 Centrosome containing a pair of centrioles.
  59. Figure 6.23 A comparison of the beating of flagella and motile cilia.
  60. Figure 6.24 Structure of a flagellum or motile cilium.
  61. Figure 6.24 Structure of a flagellum or motile cilium.
  62. Figure 6.24 Structure of a flagellum or motile cilium.
  63. Figure 6.24 Structure of a flagellum or motile cilium.
  64. Figure 6.24 Structure of a flagellum or motile cilium.
  65. For the Cell Biology Video Motion of Isolated Flagellum, go to Animation and Video Files. For the Cell Biology Video Flagellum Movement in Swimming Sperm, go to Animation and Video Files.
  66. Figure 6.25 How dynein “walking” moves flagella and cilia.
  67. Figure 6.25 How dynein “walking” moves flagella and cilia.
  68. Figure 6.25 How dynein “walking” moves flagella and cilia.
  69. Figure 6.26 A structural role of microfilaments.
  70. Figure 6.27 Microfilaments and motility.
  71. Figure 6.27 Microfilaments and motility.
  72. Figure 6.27 Microfilaments and motility.
  73. Figure 6.27 Microfilaments and motility.
  74. For the Cell Biology Video Interphase Microtubule Dynamics, go to Animation and Video Files. For the Cell Biology Video Microtubule Sliding in Flagellum Movement, go to Animation and Video Files. For the Cell Biology Video Microtubule Dynamics, go to Animation and Video Files.
  75. For the Cell Biology Video Ciliary Motion, go to Animation and Video Files.
  76. For the Cell Biology Video E-cadherin Expression, go to Animation and Video Files.
  77. Figure 6.28 Plant cell walls.
  78. Figure 6.28 Plant cell walls.
  79. For the Cell Biology Video Cartoon Model of a Collagen Triple Helix, go to Animation and Video Files. For the Cell Biology Video Staining of the Extracellular Matrix, go to Animation and Video Files. For the Cell Biology Video Fibronectin Fibrils, go to Animation and Video Files.
  80. Figure 6.30 Extracellular matrix (ECM) of an animal cell.