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TREE BIOMASS ESTIMATION
USING AIRBORNE LASER
SCANNING
Student:
Iva Nurwauziyah/娜文蒂
Advisor:
Chi-kuei Wang
Remote Sensing for Environmental Lab
Outline
1. Introduction
2. Method
3. Result and Discussion
4. Conclusion
1
BIOMASS COMPONENT
Introduction
(Matti, M, et al. 2014)
ABOVEGROUND-BIOMASS
CROWN-BIOMASS
STEM-BIOMASS
FINE ROOT-BIOMASS
BELOW GROUND-BIOMASS
2
THE IMPORTANCE OF BIOMASS
 Forest Above-Ground Biomass (AGB) is an important parameter for assessing forest
productivity and carbon sequestration rates
 Therefore, rapid and accurate estimation of forest AGB is critical to quantify carbon
stocks and essential for evaluating global carbon cycle.
Introduction
3
AIRBORNE LASER SCANNING
Introduction
ALS is one of remote sensing technology which can
provide effective solutions to estimate forest AGB.
(Hyypä, J et al 2017)
4
WORKFLOW
Method
ALS Data
ALS Data Pre-Processing
Tree Level Aboveground Biomass Estimation
5
Individual Tree Detection
Point Cloud Metrics
Calculation
Regression Analysis
WORKFLOW
Method
ALS Data Pre-Processing
6
STEP 1
1. Extracted point cloud were stored in LAS 1.3 format
2. The data were classified as ground points and aboveground points
3. Created DTM by calculating the average elevation from the ground points
WORKFLOW
 “
Method
Individual Tree Detection
7
STEP 2
1. CHM = DSM - DTM
“Individual trees were detected from
the CHM (Canopy Height Model)”
WORKFLOW
Method
Point Cloud Metrics
Calculation
8
STEP 3
The metrics based
on point clouds
were used to
describe the crown
structural
characteristics of
the detected trees
WORKFLOW
Method
Regression Analysis
9
STEP 4
𝐶𝑜𝑟𝑟 𝐵, 𝐹 =
𝑖=1
𝑛
(𝐵𝑖 − 𝐵)(𝐹𝑖 − 𝐹)
(𝑛 − 1)𝑆 𝐵 𝑆 𝐹
Pearson Correlation :
Where,
𝐶𝑜𝑟𝑟  is Correlation
𝐵  is Biomass
𝐹  is ALS metrics
𝑆 𝐵 𝑆 𝐹  sample deviations
1. Linear Regression models were fit to predict using point cloud metrics by
statistical software R
Point cloud with low correlation coefficients (<0.60) were then used in regression
analysis
WORKFLOW
Method
10
1. Linear Regression models were fit to predict using point cloud metrics by
statistical software R
2. All of the dependent variables (field estimate) and independent variables (ALS
metrics) were transformed using natural logarithm
3. Then, the AGB was back-transformed from natural logarithm to arithmetic units
using a Bias Correction Factor (BCF)
4. Using the “regsunset” function, an “all subset” regression were performed
5. Using the “relweights” function, calculated the average increase in R2
6. Finally, Akaike Information Criterion (AIC) to select the best models to predict
AGB
PAPER 1
11
PAPER 2
Result and Discussion
The Correlation of the Metrics.
( Cao, Lin, et al, 2016)
12
Result and Discussion
Aboveground predictive models based on poin cloud metrics
( Cao, Lin, et al, 2016)
13
Result and Discussion
Bar graph of relative importance (weights) of the mostly
selected metrics for all subsets of aboveground biomass
estimation models.
( Cao, Lin, et al, 2016)
14
Result and Discussion
Scatterplots Of Aboveground Biomass Between the Field
Estimated And Model Predicted Results
( Cao, Lin, et al, 2016) 15
Result and Discussion
The best models from aboveground biomass estimation
based on point cloud metrics
( Cao, Lin, et al, 2016)
16
Result and Discussion
The Accuracy the Developed Models
( Kankere, V, et al, 2013)
17
Result and Discussion
Comparison of the RMSE% of biomass estimation between models
(BIOMASS DBH_H, BIOMASS DBH_H_ALS AND BIOMASS ALS) for pine
(left) and spruce (right).
( Kankere, V, et al, 2013)
18
Conclusion
 The point cloud metrics extracted from ALS data have strong
capabilities for tree level AGB estimation, the adjusted R2 0.74-0.86.
 The developed models improved the accuracy for estimating forest
AGB.
Conclusion
19
REFERENCES
 Hyypä, J., Kelle, O., Lehikoinen, M., Inkinen, M., 2001. A Segmentation-Based Method to Retrieve
Stem Volume Estimates from 3-D Tree Height Models Produced by Laser Scanners. IEEE
TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING, VOL. 39, NO. 5
 Kankare, V., Räty, M., Yu, X., Holopainen, M., Vastaranta, M., Kantola, T., Hyyppä, H., Alho, P.,
Viitala, R., 2013. Single Tree Biomass Modelling Using Airbone Laser Scanning. ISPRS Journal of
Photogrammetry and Remote Sensing. 85, 66-73.
 Lin, C., Gao, S., Li, P., Yun, T., Shen, X., Ruan, H., 2016. Aboveground Biomass Estimation of
Individual Trees in a Coastal Planted Forest Using Full-Waveform Airbone Laser Scanning Data.
Remote Sensing. Vol.8 No.729
 Matti Maltamo, Erik Næsset, Jari Vauhkonen. 2014. Forestry Applications of Airborne Laser
Scanning: Concepts and Case Studies. London: Springer
20
THANK
YOU
FOR
YOUR
LISTENIN
G


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TREE BIOMASS ESTIMATION USING AIRBORNE LASER SCANNING

  • 1. TREE BIOMASS ESTIMATION USING AIRBORNE LASER SCANNING Student: Iva Nurwauziyah/娜文蒂 Advisor: Chi-kuei Wang Remote Sensing for Environmental Lab
  • 2. Outline 1. Introduction 2. Method 3. Result and Discussion 4. Conclusion 1
  • 3. BIOMASS COMPONENT Introduction (Matti, M, et al. 2014) ABOVEGROUND-BIOMASS CROWN-BIOMASS STEM-BIOMASS FINE ROOT-BIOMASS BELOW GROUND-BIOMASS 2
  • 4. THE IMPORTANCE OF BIOMASS  Forest Above-Ground Biomass (AGB) is an important parameter for assessing forest productivity and carbon sequestration rates  Therefore, rapid and accurate estimation of forest AGB is critical to quantify carbon stocks and essential for evaluating global carbon cycle. Introduction 3
  • 5. AIRBORNE LASER SCANNING Introduction ALS is one of remote sensing technology which can provide effective solutions to estimate forest AGB. (Hyypä, J et al 2017) 4
  • 6. WORKFLOW Method ALS Data ALS Data Pre-Processing Tree Level Aboveground Biomass Estimation 5 Individual Tree Detection Point Cloud Metrics Calculation Regression Analysis
  • 7. WORKFLOW Method ALS Data Pre-Processing 6 STEP 1 1. Extracted point cloud were stored in LAS 1.3 format 2. The data were classified as ground points and aboveground points 3. Created DTM by calculating the average elevation from the ground points
  • 8. WORKFLOW  “ Method Individual Tree Detection 7 STEP 2 1. CHM = DSM - DTM “Individual trees were detected from the CHM (Canopy Height Model)”
  • 9. WORKFLOW Method Point Cloud Metrics Calculation 8 STEP 3 The metrics based on point clouds were used to describe the crown structural characteristics of the detected trees
  • 10. WORKFLOW Method Regression Analysis 9 STEP 4 𝐶𝑜𝑟𝑟 𝐵, 𝐹 = 𝑖=1 𝑛 (𝐵𝑖 − 𝐵)(𝐹𝑖 − 𝐹) (𝑛 − 1)𝑆 𝐵 𝑆 𝐹 Pearson Correlation : Where, 𝐶𝑜𝑟𝑟  is Correlation 𝐵  is Biomass 𝐹  is ALS metrics 𝑆 𝐵 𝑆 𝐹  sample deviations 1. Linear Regression models were fit to predict using point cloud metrics by statistical software R Point cloud with low correlation coefficients (<0.60) were then used in regression analysis
  • 11. WORKFLOW Method 10 1. Linear Regression models were fit to predict using point cloud metrics by statistical software R 2. All of the dependent variables (field estimate) and independent variables (ALS metrics) were transformed using natural logarithm 3. Then, the AGB was back-transformed from natural logarithm to arithmetic units using a Bias Correction Factor (BCF) 4. Using the “regsunset” function, an “all subset” regression were performed 5. Using the “relweights” function, calculated the average increase in R2 6. Finally, Akaike Information Criterion (AIC) to select the best models to predict AGB
  • 13. Result and Discussion The Correlation of the Metrics. ( Cao, Lin, et al, 2016) 12
  • 14. Result and Discussion Aboveground predictive models based on poin cloud metrics ( Cao, Lin, et al, 2016) 13
  • 15. Result and Discussion Bar graph of relative importance (weights) of the mostly selected metrics for all subsets of aboveground biomass estimation models. ( Cao, Lin, et al, 2016) 14
  • 16. Result and Discussion Scatterplots Of Aboveground Biomass Between the Field Estimated And Model Predicted Results ( Cao, Lin, et al, 2016) 15
  • 17. Result and Discussion The best models from aboveground biomass estimation based on point cloud metrics ( Cao, Lin, et al, 2016) 16
  • 18. Result and Discussion The Accuracy the Developed Models ( Kankere, V, et al, 2013) 17
  • 19. Result and Discussion Comparison of the RMSE% of biomass estimation between models (BIOMASS DBH_H, BIOMASS DBH_H_ALS AND BIOMASS ALS) for pine (left) and spruce (right). ( Kankere, V, et al, 2013) 18
  • 20. Conclusion  The point cloud metrics extracted from ALS data have strong capabilities for tree level AGB estimation, the adjusted R2 0.74-0.86.  The developed models improved the accuracy for estimating forest AGB. Conclusion 19
  • 21. REFERENCES  Hyypä, J., Kelle, O., Lehikoinen, M., Inkinen, M., 2001. A Segmentation-Based Method to Retrieve Stem Volume Estimates from 3-D Tree Height Models Produced by Laser Scanners. IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING, VOL. 39, NO. 5  Kankare, V., Räty, M., Yu, X., Holopainen, M., Vastaranta, M., Kantola, T., Hyyppä, H., Alho, P., Viitala, R., 2013. Single Tree Biomass Modelling Using Airbone Laser Scanning. ISPRS Journal of Photogrammetry and Remote Sensing. 85, 66-73.  Lin, C., Gao, S., Li, P., Yun, T., Shen, X., Ruan, H., 2016. Aboveground Biomass Estimation of Individual Trees in a Coastal Planted Forest Using Full-Waveform Airbone Laser Scanning Data. Remote Sensing. Vol.8 No.729  Matti Maltamo, Erik Næsset, Jari Vauhkonen. 2014. Forestry Applications of Airborne Laser Scanning: Concepts and Case Studies. London: Springer 20

Editor's Notes

  1. Good afternoon everyone, I am Iva Nurwauziyah from Remote Sensing for Environmental lab. My advisor is prof Chi-Kuei Wang. In today seminar, I’d like to present about Tree Biomass Estimation using Airborne Laser Scanning.
  2. Here are my outline in today’s presentation. At the first, I will explain the motivation of this study, then I will show the methos that used, and then result and discussion and at the end of course conclusion.
  3. The biomass of trees is often subdivided into above- and below-ground components with further subdivisions of each. For example, above-ground biomass includes crown and stem biomass.
  4. Why we have to know the tree biomass estimation, because.... Forest Above-Ground Biomass (AGB) is an important parameter for assessing forest productivity and carbon sequestration rates. Therefore, rapid and accurate estimation of forest AGB is critical to quantify carbon stocks and essential for evaluating global carbon cycle. Then, how can we do that. One of the way is using Remote Sensing technique.
  5. Remote sensing techniques can provide effective solutions to estimate forest AGB for large area with short turnaround time, and Airborne Laser Scanning (ALS) is one of them. ALS is a remote sensing technology which can provide three-dimensional information about forest canopy structure.
  6. This is the general workflow how to get biomass estimation using ALS technique: From the ALS data, then ALS data pre-processing is done to get Digital Terrain Model (DTM). Then, individual tree detection. Next, I will explain more about it in the next slide
  7. For first step is ALS data pre-processing was created in three steps from the point cloud data, they are: . Extracted point cloud were stored in LAS 1.3 format . Then, The data were classified as ground points and aboveground points . Created DTM by calculating the average elevation from the ground points
  8. After we get the DTM data, the next is individual tree detection. The individual trees were detected from Canopy Height Mode (CHM). (CHM) was built from the normalized point clouds by assigning the highest returns within the grid cells (it means that DSM-DTM). Then, the CHM was smoothed by a 3x3 median filter to remove the noise in the canopy upper surface. Second, individual trees were detected from the smoothed CHM using a local maxima algorithm, which identifies high values with a variable-size circular window.
  9. The metrics based on point clouds were used to describe the crown structural characteristics of the detected trees.
  10. Model predictors were analysed for biological plausibility and statistical significance, using Pearson’s correlation coefficients (correlation) and preliminary modelling results. Point cloud with low correlation coefficients (<0.60) were then used in regression analysis
  11. Linear Regression models were fit to predict using point cloud metrics by statistical software R All of the dependent variables (field estimate) and independent variables (ALS metrics) were transformed using natural logarithm Then, the AGB was back-transformed from natural logarithm to arithmetic units using a Bias Correction Factor (BCF) Using the “regsunset” function, an “all subset” regression were performed Using the “relweights” function, calculated the average increase in R2 Finally, Akaike Information Criterion (AIC) to select the best models to predict AGB
  12. In this oppurtunity of this seminar, I summarize 2 related papers they are from remote sensing and ISPRS journal.
  13. The correlation of metrics within the delineated tree crowns for the correctly detected trees. The color, transparency and size of the points demonstrate the strength of correlations. (a) point cloud metrics
  14. the models fitted by point cloud based metrics (Adjusted R2 = 0.74–0.86) Best four aboveground biomass predictive models for each subset size (from one to three independent variables) based on Adjusted R2: (a) point cloud metrics based models
  15. The total amount of variance of the AGB estimation models, fitted by point cloud have been divided among the independent variables as relative weights. The figure based on the relative weight, of the mostly selected metrics for all subsets, the metric of 95th percentile height (H95) has the highest relative importance for AGB estimation (19.23%), followed by 75th percentile height (H75) (18.02%) and coefficient of variation of heights (Hcv) (15.18%) in the point cloud metrics based models.
  16. For the AGB estimations of the correctly detected trees using the selected models, their relationships are close to the 1:1 line, according to the scatterplots of AGB between the field-estimated and model-predicted results for cross-validation point cloud metrics based model (cross-validation R2 = 0.83, rRMSE = 6.63%)
  17. The best models for AGB estimation at individual tree level, based on point cloud metrics
  18. The most accurate result was obtained with total and stem wood biomass models for pine and with stem wood biomass for spruce. The RMSE% for total pine biomass was 26.3% and 28.4% for stem wood, and 27.6% for spruce stem wood. The highest relative error in biomass estimation was found in spruce canopy (RMSE% 77.8%)
  19. illustrate the relative accuracy (RMSE%) of the different models used.