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Saba Parvin Haque
M.Sc. Life Sciences
(Specialization in Neurobiology)
from “Sophia College
(Autonomous)”, Mumbai.
selfexplanatory.2022
Structure of
Ribosomes
Figure:
Cell parts
Figure:
Structure
of Ribosome
▪ Ribosomes were first observed in the mid-1950s
by Romanian-American cell biologist George
Emil Palade, using an electron microscope, as
dense particles or granules.
▪ The term “ribosome” was proposed by scientist
Richard B. Roberts in the end of 1950s: while
examining the animal and plant cell through a
microscope, you might have seen numerous
organelles that work together to complete the cell
activities.
▪ One of the essential cell organelles are
ribosomes, which are in charge of protein
synthesis.
Discovery
Introduction
▪ The ribosome word is derived – ‘ribo’ from ribonucleic acid
and ‘somes’ from the Greek word ‘soma’ which means ‘body’.
▪ Ribosomes are tiny spheroidal dense particles (of 150 to 200 A°
diameters) that are primarily found in most prokaryotic and
eukaryotic.
▪ They are sites of protein synthesis.
▪ They are structures containing approximately equal amounts of
RNA and proteins and serve as a scaffold for the ordered
interaction of the numerous molecules involved in protein
synthesis.
▪ Ribosomes are organelles located inside the animal, human
cell, and plant cells.
▪ The ribosomes occur in cells, both prokaryotic and eukaryotic
cells.
▪ In prokaryotic cells, the ribosomes often occur freely in the
cytoplasm.
▪ In eukaryotic cells, the ribosomes either occur freely in the
cytoplasm or remain attached to the outer surface of the
membrane of the endoplasmic reticulum.
▪ The location of the ribosomes in a cell determines what kind
of protein it makes.
▪ If the ribosomes are floating freely throughout the cell, it will
make proteins that will be utilized within the cell itself.
▪ When ribosomes are attached to the endoplasmic reticulum,
it is referred to as rough endoplasmic reticulum or rough
ER.
▪ Proteins made on the rough ER are used for usage inside the
cell or outside the cell.
▪ The number of ribosomes in a cell depends on the activity of
the cell.
▪ On average in a mammalian cell, there can be about 10
million ribosomes.
Introduction
▪ A ribosome is made from complexes of
RNAs and proteins and is, therefore, a
ribonucleoprotein.
▪ Around 62% of ribosomes are
comprised of RNA, while the rest is
proteins.
▪ Each ribosome is divided into two
subunits:
▪ A smaller subunit which binds to a larger
subunit and the mRNA pattern, and
▪ A larger subunit which binds to the tRNA,
the amino acids, and the smaller
subunit.
Figure:StructureofRibosomes
▪ Prokaryotes: have 70S ribosomes respectively subunits
comprising the little subunit of 30S and the bigger subunit of 50S.
▪ Their small subunit has a 16S RNA subunit (consisting of 1540
nucleotides) bound to 21 proteins.
▪ The large subunit is composed of a 5S RNA subunit (120
nucleotides), a 23S RNA subunit (2900 nucleotides) and 31 proteins.
▪ Eukaryotes: have 80S ribosomes respectively comprising of little
(40S) and substantial (60S) subunits.
▪ The smaller 40S ribosomal subunit is prolate ellipsoid in shape and
consists of one molecule of 18S ribosomal RNA (or rRNA) and 30
proteins (named as S1, S2, S3, and so on).
▪ The larger 60S ribosomal subunit is round in shape and contains a
channel through which growing polypeptide chain makes its exit.
▪ It consists of three types of rRNA molecules, i.e., 28S rRNA, 5.8
rRNA and 5S rRNA, and 40 proteins (named as L1, L2, L3 and so
on).
Figure:StructureofRibosomes
Figure:
prokaryotic
& eukaryotic
Ribosomes
▪ The differences between the ribosomes of bacterial and
eukaryotic are used to create antibiotics that can destroy
bacterial infection without harming human cells.
▪ The ribosomes seen in the chloroplasts of mitochondria of
eukaryotes are comprised of big and little subunits composed
of proteins inside a 70S particle.
▪ The ribosomes share a core structure that is similar to all
ribosomes despite differences in its size.
▪ The two subunits fit together and work as one to translate the
mRNA into a polypeptide chain during protein synthesis.
▪ Because they are formed from two subunits of non-equal size,
they are slightly longer in the axis than in diameter.
▪ During protein synthesis, when multiple ribosomes are
attached to the same mRNA strand, this structure is known
as polysome.
▪ The existence of ribosomes is temporary, after the synthesis of
polypeptide the two sub-units separate and are reused or
broken up.
Structure
of
Ribosomes
▪ Ribosome contains three major active sites:
▪ aminoacyl (A) site – point of attachment of aa-loaded
tRNA
▪ peptidyl (P) site – point of attachment of tRNA
holding polypeptide
▪ exit E site – point where “unloaded” tRNA leaves the
ribosome
▪ In addition, there are there
▪ decoding center: located in the 30S subunit, this site
ensures proper codon/anticodon attachment. (A tRNA
matching a particular codon is called a cognate tRNA
with respect to that codon).
▪ peptidyl transferase center: located in the 50S
subunit, this active site catalyzes peptide bonds.
Figure: Structure of Ribosome
Functions of
Ribosomes
▪ The ribosome is a complex molecular machine, found within all living
cells, that serves as the site of biological protein synthesis
(translation).
▪ Ribosomes link amino acids together in the order specified by
messenger RNA (mRNA) molecules.
▪ Ribosomes act as catalysts in two extremely important biological
processes called peptidyl transfer and peptidyl hydrolysis.
▪ It assembles amino acid to form proteins that are essential to carry out
cellular functions.
▪ The DNA produces mRNA by the process of DNA transcription.
▪ The mRNA is synthesized in the nucleus and transported to the
cytoplasm for the process of protein synthesis.
▪ The ribosomal subunits in the cytoplasm are bound around mRNA
polymers.The tRNA then synthesizes proteins.
▪ The proteins synthesized in the cytoplasm are utilized in the cytoplasm
itself, the proteins synthesized by bound ribosomes are transported
outside the cell.
References
▪ Dr, lJ, Satyan arayana,Biochemistry 3rd Edition
▪ Jeremy M. Berg, John L Tymoczko, lubert Stryer, Biochemistry, 5th edition.
▪ https://microbenotes.com/ribosomes-structure-and-functions/
▪ https://byjus.com/biology/ribosomes/
▪ https://alevelbiology.co.uk/notes/ribosomes-structure-and-functions/
▪ https://biologydictionary.net/ribosome/
▪ http://www.bio.miami.edu/dana/250/250SS16_9.html
▪ https://useruploads.socratic.org/XYEERPSSHmBWIrcYdmQw_ribosom
e.jpg
▪ https://images.app.goo.gl/cPE5kfYQt8pVLkHR6
Thank You

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Structure of Ribosomes.pdf

  • 1. Saba Parvin Haque M.Sc. Life Sciences (Specialization in Neurobiology) from “Sophia College (Autonomous)”, Mumbai. selfexplanatory.2022
  • 5. ▪ Ribosomes were first observed in the mid-1950s by Romanian-American cell biologist George Emil Palade, using an electron microscope, as dense particles or granules. ▪ The term “ribosome” was proposed by scientist Richard B. Roberts in the end of 1950s: while examining the animal and plant cell through a microscope, you might have seen numerous organelles that work together to complete the cell activities. ▪ One of the essential cell organelles are ribosomes, which are in charge of protein synthesis. Discovery
  • 6. Introduction ▪ The ribosome word is derived – ‘ribo’ from ribonucleic acid and ‘somes’ from the Greek word ‘soma’ which means ‘body’. ▪ Ribosomes are tiny spheroidal dense particles (of 150 to 200 A° diameters) that are primarily found in most prokaryotic and eukaryotic. ▪ They are sites of protein synthesis. ▪ They are structures containing approximately equal amounts of RNA and proteins and serve as a scaffold for the ordered interaction of the numerous molecules involved in protein synthesis. ▪ Ribosomes are organelles located inside the animal, human cell, and plant cells. ▪ The ribosomes occur in cells, both prokaryotic and eukaryotic cells. ▪ In prokaryotic cells, the ribosomes often occur freely in the cytoplasm.
  • 7. ▪ In eukaryotic cells, the ribosomes either occur freely in the cytoplasm or remain attached to the outer surface of the membrane of the endoplasmic reticulum. ▪ The location of the ribosomes in a cell determines what kind of protein it makes. ▪ If the ribosomes are floating freely throughout the cell, it will make proteins that will be utilized within the cell itself. ▪ When ribosomes are attached to the endoplasmic reticulum, it is referred to as rough endoplasmic reticulum or rough ER. ▪ Proteins made on the rough ER are used for usage inside the cell or outside the cell. ▪ The number of ribosomes in a cell depends on the activity of the cell. ▪ On average in a mammalian cell, there can be about 10 million ribosomes. Introduction
  • 8. ▪ A ribosome is made from complexes of RNAs and proteins and is, therefore, a ribonucleoprotein. ▪ Around 62% of ribosomes are comprised of RNA, while the rest is proteins. ▪ Each ribosome is divided into two subunits: ▪ A smaller subunit which binds to a larger subunit and the mRNA pattern, and ▪ A larger subunit which binds to the tRNA, the amino acids, and the smaller subunit. Figure:StructureofRibosomes
  • 9. ▪ Prokaryotes: have 70S ribosomes respectively subunits comprising the little subunit of 30S and the bigger subunit of 50S. ▪ Their small subunit has a 16S RNA subunit (consisting of 1540 nucleotides) bound to 21 proteins. ▪ The large subunit is composed of a 5S RNA subunit (120 nucleotides), a 23S RNA subunit (2900 nucleotides) and 31 proteins. ▪ Eukaryotes: have 80S ribosomes respectively comprising of little (40S) and substantial (60S) subunits. ▪ The smaller 40S ribosomal subunit is prolate ellipsoid in shape and consists of one molecule of 18S ribosomal RNA (or rRNA) and 30 proteins (named as S1, S2, S3, and so on). ▪ The larger 60S ribosomal subunit is round in shape and contains a channel through which growing polypeptide chain makes its exit. ▪ It consists of three types of rRNA molecules, i.e., 28S rRNA, 5.8 rRNA and 5S rRNA, and 40 proteins (named as L1, L2, L3 and so on). Figure:StructureofRibosomes
  • 11. ▪ The differences between the ribosomes of bacterial and eukaryotic are used to create antibiotics that can destroy bacterial infection without harming human cells. ▪ The ribosomes seen in the chloroplasts of mitochondria of eukaryotes are comprised of big and little subunits composed of proteins inside a 70S particle. ▪ The ribosomes share a core structure that is similar to all ribosomes despite differences in its size. ▪ The two subunits fit together and work as one to translate the mRNA into a polypeptide chain during protein synthesis. ▪ Because they are formed from two subunits of non-equal size, they are slightly longer in the axis than in diameter. ▪ During protein synthesis, when multiple ribosomes are attached to the same mRNA strand, this structure is known as polysome. ▪ The existence of ribosomes is temporary, after the synthesis of polypeptide the two sub-units separate and are reused or broken up. Structure of Ribosomes
  • 12. ▪ Ribosome contains three major active sites: ▪ aminoacyl (A) site – point of attachment of aa-loaded tRNA ▪ peptidyl (P) site – point of attachment of tRNA holding polypeptide ▪ exit E site – point where “unloaded” tRNA leaves the ribosome ▪ In addition, there are there ▪ decoding center: located in the 30S subunit, this site ensures proper codon/anticodon attachment. (A tRNA matching a particular codon is called a cognate tRNA with respect to that codon). ▪ peptidyl transferase center: located in the 50S subunit, this active site catalyzes peptide bonds. Figure: Structure of Ribosome
  • 13. Functions of Ribosomes ▪ The ribosome is a complex molecular machine, found within all living cells, that serves as the site of biological protein synthesis (translation). ▪ Ribosomes link amino acids together in the order specified by messenger RNA (mRNA) molecules. ▪ Ribosomes act as catalysts in two extremely important biological processes called peptidyl transfer and peptidyl hydrolysis. ▪ It assembles amino acid to form proteins that are essential to carry out cellular functions. ▪ The DNA produces mRNA by the process of DNA transcription. ▪ The mRNA is synthesized in the nucleus and transported to the cytoplasm for the process of protein synthesis. ▪ The ribosomal subunits in the cytoplasm are bound around mRNA polymers.The tRNA then synthesizes proteins. ▪ The proteins synthesized in the cytoplasm are utilized in the cytoplasm itself, the proteins synthesized by bound ribosomes are transported outside the cell.
  • 14. References ▪ Dr, lJ, Satyan arayana,Biochemistry 3rd Edition ▪ Jeremy M. Berg, John L Tymoczko, lubert Stryer, Biochemistry, 5th edition. ▪ https://microbenotes.com/ribosomes-structure-and-functions/ ▪ https://byjus.com/biology/ribosomes/ ▪ https://alevelbiology.co.uk/notes/ribosomes-structure-and-functions/ ▪ https://biologydictionary.net/ribosome/ ▪ http://www.bio.miami.edu/dana/250/250SS16_9.html ▪ https://useruploads.socratic.org/XYEERPSSHmBWIrcYdmQw_ribosom e.jpg ▪ https://images.app.goo.gl/cPE5kfYQt8pVLkHR6