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Arpita CHANDRA
Types of sputum sample collection
1. Expectorated
2. Induced
3. Bronchoscopy
4. Endotracheal or Tracheostomy suction specimens
5. Transtracheal Aspirates
6. Other invasive procedure
Expectoration
 Good sputum samples depend on through health care
worker education and patient understanding all
phases of the collection process.
 Before Expectoration- Food should not have been
ingested for 1 to 2 hours
 Mouth should be rinsed with saline or water just
before expectoration
Sterile container
leak proof screw cap container
Specimen should be deep coughed
Transported to laboratory immediately
INDUCED
Who are unable to produce sputum may be assisted by
respiratory therapy
By using postural drainage and thoracic percussion to
stimulate production of acceptable sputum
Aerosol induced specimens
Useful for Isolation of Mycobacterium or fungal disease
- high diagnostic yeild
- In case of Pneumocystis jiroveci pneumonia as well
Induced specimen collection
By allowing the patient to breath
Aerosolized droplets of a solution containing 15% NaCl
and 10% glycerin for 10 min
Untill a strong cough reflex is initiated
These specimens are usually adequate for culture
Gastric aspirates
 Isolation of Acid fast bacilli
 Early morning sample
 A nasogastric tube is inserted into the stomach and
contents are withdrawn
 Resistance of Mycobacterium to
acidity sample must be delivered
immediately so that acidity can be
neutralized then processed
Endotracheal suction specimens
 Especially patient on ventilator
 Patient with trachiostomy rapidly colonized with gram
negative bacilli (P. aeruginosa and A. Baumannii)
COLLECTION
It should be done with a sterile technique using 22 inch
suction catheter , through the endotracheal tube
- First aspirates discarded
- Second aspirates should be collected after tracheal
instillation of 5 ml saline in a mucous collection tube
Bronchoscopy
By Bronchoalveolar lavage (BAL)
(most suitable for detecting Pneumocystis cysts and
fungal elements)
Procedure
In this procedure high volume of saline( 100-300ml)
infused into a lung segment though the bronchoscope to
obtain cells of the pulmonary interstitium and alveolar
spaces send a portion of it to the laboratory.
Trans-tracheal Aspirates (TTA)
 Invasive procedure
 Percutaneous transtracheal aspirates are obtained by
inserting a small plastic catheter into the trachea via
needle previously inserted through the skin and
cricothyroid membrane
 It cannot be used in uncooprative patients
 Rarely used anymore anaerobes- Actinomyces and
those associated with aspiration pneumonia
Other invasive Procedures
 When pleural empyema is present
 Thoracentesis may be used to
obtain infected fluid for direct
examination and culture
Specimen Processing
Lower respiratory tract specimen
Examined by
Direct wet mount- For parasite
Microscopy with 10%KOH – For fungal elements
Gram stain for Bacterial identification
AFB stain for M. tuberculosis
Ova of Paragonimus
westermannii
Budding yeast cells - Candida
Larvae of strongloides stercoralis
Sputum examination ( Macroscopic )
Examine for Colour, Consistency and odor
Appearance / odor Bacterial infection
Mucopurulent sputum Bacterial pneumonia
Scanty, watery sputum Atypical pneumonia
Rusty sputum Pneumococcal pneumonia
Current jelly or dark red K. Pneumonia
Foul smelling sputum Anaerobic infection
Greenish color Pseudomonas
Infection Indication
 Leukocytosis- Bacterial pneumonia
 Leukopenia- Viral infection
 Eosinophilia- Parasitic infection
Gram stain of sputum specimen
Acceptable specimens
Less than 10 squamous epithelial cells / low power
field (100x) WBCs may not be relevant, because many
patients are severely neutropenic .
On the other hand
Presence of 25 or more polymorphonuclear leukocytes /
field with few epithelial cells – Excellent specimen
Rejection criteria of ETAs
-Greater than 10 sqamous epthelial cells / field
-In Legionella pneumonia, sputum may be scant and
watery with no host cells such specimen may be positive
by direct fluoresent antibody stain and culture and
should not be subjected to screening procedure.
Sputum sample rejection criteria
1. Bartlett score
2. Murray and washington grading system
3. Gecklet et al
4. Van Scoy
5. Barry
6. Heineman and Radano2
Bartlett score
 Based on microscopic examination
1. Number of Neutrophils / field
2. Number of sqamous epithelial cells / field
(+) Score = acceptable sample
(-) Score = Non acceptable sample
2. Murray and washington grading system
 Based on no. of epithelial cell / 10x field
 < 10 Epithelial cell / 10x field = acceptable
3. Geckler criteria
< 25 Epithelial cell / 10x field = acceptable
4. Van Scoy
Avg no of WBC/LPF
>25 WBC/LPF = Acceptable sample
5. According to Barry
Assign (+) and(–)values
+3 (if >150 WBC) Any positive score= Acceptable
+2(If 76-150 WBC)
+1 (if 16-25 WBC)
Per 100x field
-3( if >25 EPC )
-2 (if 16-25 EPC)
-1 (if 5-15 EPC) / 100x field
6. Heinman and Radano
 Avg ratio of WBC to EPC (> 1 EPC / every 10 WBC) in
the average low power field
In case of tuberculosis
 Sputum sample collection
- Early morning and spot ( according to NTEP)
 Concentration by
- Petroff method and modified petroff method by
adding NALC-NaOH
- Acid fast stain
- Fluorescent microscopy
- LJ culture
Modified Petroff method according to Belly & Scott
REAGENT PREPARATION
A (NALC-NaOH preparation)
(4%) NaOH (50mL)
Trisodium citrate (2.94%)(50ml)
NALC powder (0.5g)
Mix, sterile and store the NaOH and the citrate in sterile,
screw capped flasks for later use. This solution should be
used within hours after the NALC is added.
B - Phosphate Buffer preparation
Solution-A
 Sodium monohydrogen phosphate (anhydrous) 9.47 g
 Distilled water 1000ml
Solution- B
 Potassium dihydrphosphate 9.07g
 Distilled water 1000ml
Add 50 ml of solution B to 50 ml of solution A and
adjust pH to 6.8
Procedure
Transfer a maximum of 10 ml of sputum
In plastic 50ml conical centrifuge tube
Add equal volume of freshly prepared digestant (SOL-A) to the
tube
Votex the specimen for approximately 15 sec,
Mix it till the specimens are being digested
An extra pinch of NALC crystals may be necessary to liquefy
mucoid sputa
After 15 min. of digestion
Add enough phosphate buffer to reach within 1 cm of the top
Invert the tube to mix the solution, stop digestion process
Centrifuge all the tubes at 3600 x g for 15 min
Using aerosol free sealed centrifuge caps
Carefully pour off the supernatant into a splash proof
container
The lip of the tube may be wiped with an amphyl or phenol
soaked gauze to absorb drips
Resuspend the sediment in 1 to 2 mL phosphate buffer, pH
6.8 buffer (with bovine serum albumin)
Inoculate the sediment to culture media and prepare slide
Grading of AFB Smear
Number of AFBs seen Result and grading Number of field to
be examined
None in 100 fields Negative 100
1-9 in 100 fields Scanty 200
10-99 in 100 fields 1+ 100
1-10 per fields 2+ 20
Greater than 10
bacilli/field
3+ 20
Routine culture
 Mac Conkey agar - GNB
 Chocolate agar - Heamophilus and Neisseria species
 Do not inoculate on Enrichment broth and Anaerobic
culture
 Only percutaneous respiration and bronchial brush
are suitable for anaerobic culture
 Fro streptococcus pneumonia- with 5 % CO2 growing
best on blood agar also can grow on chocolate agar
 Manitol salt agar - S.aureus
 Lowenstein jensen media – M. tuberculosis
Reference
1. Bailey & Scott
2. Lester K. Wong et al. Comparison of six different
criteria for judging the acceptability of sputum
specimen.Journal of clinical microbiology
2019:16(4):0095
Sputum sample processing.pptx

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Sputum sample processing.pptx

  • 2. Types of sputum sample collection 1. Expectorated 2. Induced 3. Bronchoscopy 4. Endotracheal or Tracheostomy suction specimens 5. Transtracheal Aspirates 6. Other invasive procedure
  • 3. Expectoration  Good sputum samples depend on through health care worker education and patient understanding all phases of the collection process.  Before Expectoration- Food should not have been ingested for 1 to 2 hours  Mouth should be rinsed with saline or water just before expectoration
  • 4. Sterile container leak proof screw cap container Specimen should be deep coughed Transported to laboratory immediately
  • 5. INDUCED Who are unable to produce sputum may be assisted by respiratory therapy By using postural drainage and thoracic percussion to stimulate production of acceptable sputum
  • 6. Aerosol induced specimens Useful for Isolation of Mycobacterium or fungal disease - high diagnostic yeild - In case of Pneumocystis jiroveci pneumonia as well
  • 7. Induced specimen collection By allowing the patient to breath Aerosolized droplets of a solution containing 15% NaCl and 10% glycerin for 10 min Untill a strong cough reflex is initiated These specimens are usually adequate for culture
  • 8. Gastric aspirates  Isolation of Acid fast bacilli  Early morning sample  A nasogastric tube is inserted into the stomach and contents are withdrawn  Resistance of Mycobacterium to acidity sample must be delivered immediately so that acidity can be neutralized then processed
  • 9. Endotracheal suction specimens  Especially patient on ventilator  Patient with trachiostomy rapidly colonized with gram negative bacilli (P. aeruginosa and A. Baumannii)
  • 10. COLLECTION It should be done with a sterile technique using 22 inch suction catheter , through the endotracheal tube - First aspirates discarded - Second aspirates should be collected after tracheal instillation of 5 ml saline in a mucous collection tube
  • 11.
  • 12. Bronchoscopy By Bronchoalveolar lavage (BAL) (most suitable for detecting Pneumocystis cysts and fungal elements)
  • 13. Procedure In this procedure high volume of saline( 100-300ml) infused into a lung segment though the bronchoscope to obtain cells of the pulmonary interstitium and alveolar spaces send a portion of it to the laboratory.
  • 14. Trans-tracheal Aspirates (TTA)  Invasive procedure  Percutaneous transtracheal aspirates are obtained by inserting a small plastic catheter into the trachea via needle previously inserted through the skin and cricothyroid membrane
  • 15.  It cannot be used in uncooprative patients  Rarely used anymore anaerobes- Actinomyces and those associated with aspiration pneumonia Other invasive Procedures  When pleural empyema is present  Thoracentesis may be used to obtain infected fluid for direct examination and culture
  • 16. Specimen Processing Lower respiratory tract specimen Examined by Direct wet mount- For parasite Microscopy with 10%KOH – For fungal elements Gram stain for Bacterial identification AFB stain for M. tuberculosis
  • 17. Ova of Paragonimus westermannii Budding yeast cells - Candida Larvae of strongloides stercoralis
  • 18. Sputum examination ( Macroscopic ) Examine for Colour, Consistency and odor Appearance / odor Bacterial infection Mucopurulent sputum Bacterial pneumonia Scanty, watery sputum Atypical pneumonia Rusty sputum Pneumococcal pneumonia Current jelly or dark red K. Pneumonia Foul smelling sputum Anaerobic infection Greenish color Pseudomonas
  • 19. Infection Indication  Leukocytosis- Bacterial pneumonia  Leukopenia- Viral infection  Eosinophilia- Parasitic infection
  • 20. Gram stain of sputum specimen Acceptable specimens Less than 10 squamous epithelial cells / low power field (100x) WBCs may not be relevant, because many patients are severely neutropenic .
  • 21. On the other hand Presence of 25 or more polymorphonuclear leukocytes / field with few epithelial cells – Excellent specimen
  • 22. Rejection criteria of ETAs -Greater than 10 sqamous epthelial cells / field -In Legionella pneumonia, sputum may be scant and watery with no host cells such specimen may be positive by direct fluoresent antibody stain and culture and should not be subjected to screening procedure.
  • 23. Sputum sample rejection criteria 1. Bartlett score 2. Murray and washington grading system 3. Gecklet et al 4. Van Scoy 5. Barry 6. Heineman and Radano2
  • 24. Bartlett score  Based on microscopic examination 1. Number of Neutrophils / field 2. Number of sqamous epithelial cells / field (+) Score = acceptable sample (-) Score = Non acceptable sample
  • 25. 2. Murray and washington grading system  Based on no. of epithelial cell / 10x field  < 10 Epithelial cell / 10x field = acceptable 3. Geckler criteria < 25 Epithelial cell / 10x field = acceptable 4. Van Scoy Avg no of WBC/LPF >25 WBC/LPF = Acceptable sample
  • 26. 5. According to Barry Assign (+) and(–)values +3 (if >150 WBC) Any positive score= Acceptable +2(If 76-150 WBC) +1 (if 16-25 WBC) Per 100x field -3( if >25 EPC ) -2 (if 16-25 EPC) -1 (if 5-15 EPC) / 100x field
  • 27. 6. Heinman and Radano  Avg ratio of WBC to EPC (> 1 EPC / every 10 WBC) in the average low power field
  • 28. In case of tuberculosis  Sputum sample collection - Early morning and spot ( according to NTEP)  Concentration by - Petroff method and modified petroff method by adding NALC-NaOH - Acid fast stain - Fluorescent microscopy - LJ culture
  • 29. Modified Petroff method according to Belly & Scott REAGENT PREPARATION A (NALC-NaOH preparation) (4%) NaOH (50mL) Trisodium citrate (2.94%)(50ml) NALC powder (0.5g) Mix, sterile and store the NaOH and the citrate in sterile, screw capped flasks for later use. This solution should be used within hours after the NALC is added.
  • 30. B - Phosphate Buffer preparation Solution-A  Sodium monohydrogen phosphate (anhydrous) 9.47 g  Distilled water 1000ml Solution- B  Potassium dihydrphosphate 9.07g  Distilled water 1000ml Add 50 ml of solution B to 50 ml of solution A and adjust pH to 6.8
  • 31. Procedure Transfer a maximum of 10 ml of sputum In plastic 50ml conical centrifuge tube Add equal volume of freshly prepared digestant (SOL-A) to the tube Votex the specimen for approximately 15 sec, Mix it till the specimens are being digested An extra pinch of NALC crystals may be necessary to liquefy mucoid sputa After 15 min. of digestion
  • 32. Add enough phosphate buffer to reach within 1 cm of the top Invert the tube to mix the solution, stop digestion process Centrifuge all the tubes at 3600 x g for 15 min Using aerosol free sealed centrifuge caps Carefully pour off the supernatant into a splash proof container
  • 33. The lip of the tube may be wiped with an amphyl or phenol soaked gauze to absorb drips Resuspend the sediment in 1 to 2 mL phosphate buffer, pH 6.8 buffer (with bovine serum albumin) Inoculate the sediment to culture media and prepare slide
  • 34. Grading of AFB Smear Number of AFBs seen Result and grading Number of field to be examined None in 100 fields Negative 100 1-9 in 100 fields Scanty 200 10-99 in 100 fields 1+ 100 1-10 per fields 2+ 20 Greater than 10 bacilli/field 3+ 20
  • 35. Routine culture  Mac Conkey agar - GNB  Chocolate agar - Heamophilus and Neisseria species  Do not inoculate on Enrichment broth and Anaerobic culture  Only percutaneous respiration and bronchial brush are suitable for anaerobic culture  Fro streptococcus pneumonia- with 5 % CO2 growing best on blood agar also can grow on chocolate agar  Manitol salt agar - S.aureus  Lowenstein jensen media – M. tuberculosis
  • 36. Reference 1. Bailey & Scott 2. Lester K. Wong et al. Comparison of six different criteria for judging the acceptability of sputum specimen.Journal of clinical microbiology 2019:16(4):0095