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 What is siderophore ?
 Role and Importance of siderophore
 How siderophore will form?
 Mechanism of siderophore
 Method use for determination of siderophore.
 Effect of siderophore on morphological character, yield and
uptake of nutrient by crop
 Siderophores are compounds from ancient Greek words, sidero
‘iron’ and phore ‘carriers’ meaning ‘iron carriers’.
 These are low-molecular-weight iron-chelating compounds,
produced by ‘rhizospheric bacteria’ under iron-limited conditions.
 They are small, high affinity iron chelating compounds secreted by
microorganisms such as bacteria, fungi etc.
 Siderophore usually form a stable hexahendate, octahedral
complex with Fe3+
 Kloepper et al.(1980) were the first to demonstrate the importance
of Siderophores.
 Iron is a constituent of protein.
 It activates the number of enzymes.
 Iron is a vital element require by all living organisms for many
cellular processes such as electron transport chain and as a
cofactor for many enzymes
 It plays an essential role in the nucleic acid metabolism.
 It is necessary for synthesis and maintenance of chlorophyll in
plants.
IRON – AN IMPORTANT ESSENTIAL ELEMENT
 Hydroxymate siderophore.
eg- Pseudomonas fluorescens
 Catecholate siderophore
eg-Azotobacter vinelandi
 Carboxylate siderophore
eg- Rhizobium meliloti
TYPES OF SIDEROPHORE
HOW SIDEROPHORES WILL FORM???
Iron is often
insoluble
(oxides,
hydroxides)
Cells produce
siderophores
Iron binds to
siderophore
complex
Siderophore
binds to
recognition site
on cell
Iron is reduced
(Fe3+
into Fe )2+
Iron is taken up
by the cell.
Siderophore
Siderophore receptor site on cell
Outside the Cell
Inside the Cell
Fe3+
Siderophore receptor site on cell
Outside the Cell
Fe3+
Fe3+
Inside the Cell
Siderophore receptor site on cell
Fe3+
Fe3+
Siderophore
Outside the Cell
Fe3+
Inside the Cell
• Azotobacter
• Pseudomonas
• Bacillus
• Streptomyces
•Among thesemicrobes Pseudomonas species isthe activesiderophore
producer
SIDEROPHORE PRODUCING MICROORGANISM
Widely used method for detection of siderophore
production by microorganisms in solid medium is
the universal Chrome azurol S (CAS) agar plate
assay.
DETECTION OF SIDEROPHORE PRODUCTION
Source: Schwyn, B., and J. B. Neilands.(1987) .Analytical Biochem.3(3):47-56.
APPLICATION OF SIDEROPHORE
Role of Siderophore in Agriculture
 Soil mineral weathering
 Enhancing Growth of plant
 Pathogen Biocontrol of plants
CASE STUDY…
PGPR Isolates Isolate no. Incubation time(hr) % siderophore units
Bacillus coagulans BpN 48 -
Bacillus sp. BAC 32 -
Bacillus polymyxa BbP 48 -
Brevibacillus brevis BbC 52 21
Enterobacter sp. EB-RS-1 52 38
Pseudomonas sp. Z2 24 51
Pseudomonas fluorescens PF11 24 76
Pseudomonas striata PS1 32 -
Azospirillum brasilense SP7 72 24
Enterobacter sp. EG-ER-2 48 64
Table 1: Siderophorogenesis by PGPR isolates.
Source: Gupta A. & Murali G(2008),Indian journal of Agricultral Research (42) 153-156.
Effect of pH on Siderophore production.
Source: Ali S.S. & Vidhale N.N(2011), International Journal of Microbiology Research 3(3), 131.
Organisms
Shoot
length(cm)
Root
length(cm)
Germination
(Days)
Control - 6.2±0.2 4.5±0.19 6±0.11
Test P. fluorescens 12.5±0.12 8.5±0.63 4±0.24
P. aeruginosa 11.5±0.26 7.9±0.39 4±0.18
Organisms Shoot
length(cm)
Root
length(cm)
Germination
(Days)
Control - 6.1±0.23 3.5±0.17 7±0.37
Test P. fluorescens 10.0±0.62 5.1±0.27 5±0.33
P. aeruginosa 9.6±0.49 4.8±0.19 7±0.21
Table 2 : Influence of Pseudomonas sp. inoculation on seed
germination and growth of Triticum aestivum
Table no. 3 : Influence of Pseudomonas sp. inoculation on seed
germination and growth of Apios americana (Potato bean)
Source: Bholay. et al.,(2012)IOSR Journal of pharmacy and Biology Science Vol (3),pp 27-32
Source: Bholay. et al.,(2012)IOSR Journal of pharmacy and Biology Science Vol 3,pp 27-32
Graphical Representation of Table 2 and Table 3
Isolates
CAS assay( halo formation in
blue agar)
Diameter of halo(in
cm)
1 + 1.50±0.2
2 + 1.40±0.1
3 - -
4 + 0.78±0.2
5 + 1.30±0.3
6 + 0.60±0.4
7 + 0.80±0.1
8 - -
9 + 0.90±0.4
10 - -
11 + 1.10±0.5
12 + 1.30±0.1
R. meliloti + 1.70±0.3
Table 4: Growth of siderophore on CAS agar plate
Source: Verma V., et al.,(2012) Research Journal of Chemical Science Vol (3),pp 27-32
Treatment
Root length Shoot length
% seed
germination
Initial
(mm)
Increased
in mm
Initial
(mm)
Increased
in mm
Control 35.0 - 30.7 - 30
Test 42.0 7 70.9 40.2 50
Table 5: Influence of Bacillus shakletonii GN-09 inoculation
on Soybean growth
Source: Jikare A.M. & Chavan M.D. (2013) International Journal of Research and Biological
Science Vol 3, 198-202
Organism Pot culture
P.
Pseudoal
aligenes
Fe Cu Mn Zn Co Ni Al
P-
31.2±0.
0001
0.28±0.0
001
0.38±0.0
006
0.52±0.0
024
0.35±0.0
015
0.42±0.0
001
0.97±0.0
001
P+
69.8±0.
0001
1.20±0.0
001
9.60±0.0
001
0.93±0.0
014
0.36±0.0
004
0.55±0.0
025
10.72±0.
0002
Table 6: Effect of with and without Siderophore producing
microbes on the microelement uptake in root of Cajanas
cajan in pot studies.
Source : Gamit D.A. & Tank S.K.,(2014) International Journal of Research in Pure and
Applied Microbiology .4(1), 20-27.
Table 7: Effect of with and without Siderophore producing
microbes on the microelement uptake in shoot of
Cajanas cajan in pot studies.
Organi
sm
Pot culture
P.
pseudo
alcalig
enes
Fe Cu Mn Zn Co Ni Al
P-
57.6±0.0
001
0.54±0.0
003
2.31±0.0
009
0.69±0.0
033
0.26±0.0
018
0.30±0.0
010
1.09±0.0
001
P+
123.9±0.
0003
0.98±0.0
003
9.99±0.0
030
1.55±0.0
019
0.67±0.0
021
0.76±0.0
020
25.6±0.0
002
Source : Gamit D.A. & Tank S.K.,(2014) International Journal of Research in Pure and
Applied Microbiology .4(1), 20-27.
Shoot length(cm) Root length(cm) Number of leaves(cm)
Control 7 1.5 13
Iron deprived
condition
5 3 10
Iron deprived and
siderophore
supplemented
condition
9 5 19
Shoot
length(cm)
Root length(cm)
Number of
leaves(cm)
Control 15 4.5 9
Iron deprived condition 10 3 6
Iron deprived and
siderophore
supplemented condition
17.5 6.5 13
Table 8: Effect of siderophore produce by Pseudomonas flurescens on the
growth of Masoor dal
Table no. 9: Effect of siderophore produce by Pseudomonas flurescens on the
growth of large white lima bean
Source:Parmar H.Y.& Chakraborty H. (2016) International Journal of Recent
Scientific Research Vol (3) 101-107
Fig: Effect of Siderophore on growth of Lens culinaris
(Masoor Dal)
Source: Parmar H.Y.and Chakraborty H. (2016) International Journal of
Recent Scientific Research Vol (3) 101-107
No Given Bacterial isolates Root length Shoot length Vigor index Germination%
C Control 5.6 3.1 609 70%
M1R2
Pseudomonas
spp.
9.6 5.2 1480 100%
M7R1
Pseudomonas
spp.
4.2 5.5 582 60%
M6S3
Enterobacter
spp.
5.4 6.6 840 70%
M7S1
Stenotrophomon
as spp
9.0 5.2 1420 100%
M7ER1
Microbacterium
spp.
9.9 5.3 1292 85%
M7ER2
Microbacterium
spp.
6.0 3.1 728 80%
M12R2 Bacillus spp. 7.8 6.2 1120 80%
M12R1 Bacillus spp. 10.6 3.5 930.6 66%
Table no 10: Influence of bacterial isolates inoculation on sunflower
germination and growth in plate experiment
Source: Raval A.A.& Desai P.B.(2015) International
Journal of Pharmacy and Life Sciences Vol(6)
pp 4803 4811
Microorganisms
Nodules per plant
Nitrogenase
activity
Dry weight
(mg per plant)
Total nitrogen
(mg per plant)
No.
Fresh
weight(mg)
µmolC2H4
plant-1h-1
Shoot Root Shoot Root
Bradyrhizobium
USDA 3447
90 480 7.5 1110 512 55 14
Bradyrhizobium
USDA 3447+
Pseudomonas
aeruginosa
150 810 10.2 1600 780 85 25
Bradyrhizobium
USDA
3447+P.chrysogenum 173 920 12.4 1815 870 102 29
LSD(P=5%) 20 105 1.8 196 95 19 10
Table no 11 : Effect of siderophore producing organisms on
nodulation, nitrogenase activity and plant growth of mung bean
Source: Mahmoud A.L. & Abd-alla .M.H (2001) International Journal of
Agriculture and Biology, Vol (3), 157-162.
 Iron is essential for almost all life, essential for processes such as respiration
and DNA synthesis.
 Siderophore production by different microorganisms were confirmed by
Universal CAS assay. The colour change of CAS from blue to oranged-red
resulted from siderophore removal of Fe from dye . Amount of siderophore
produced were estimated as percentage of siderophore units as the proportion of
CAS colour shifted.
 Under aerated conditions at neutral to alkaline pH, inorganic iron is extremely
insoluble for bacterial growth. To acquire iron bacterial cell produce
siderophore.There is an enormous scope for the application of microbial
siderophores for sustanibility of agriculture and environment
CONCLUSION
 Siderophore which was proved to be useful for plant growth promotion due to
increased in root length, shoot length,when grown under iron limiting condition
with siderophore supplements.
 Siderophore producing microbes stimulated the nodulation, nitrogen fixation
and plant growth of many crop. Thus, siderophore can be used in combination
with other biofertilizers to increase crop productivity
“Feed the soil rather than
feeding the plant”
THANK YOU

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Siderophore: Secretion of Bacteria as a Chelating Agent

  • 1.
  • 2. .
  • 3.  What is siderophore ?  Role and Importance of siderophore  How siderophore will form?  Mechanism of siderophore  Method use for determination of siderophore.  Effect of siderophore on morphological character, yield and uptake of nutrient by crop
  • 4.  Siderophores are compounds from ancient Greek words, sidero ‘iron’ and phore ‘carriers’ meaning ‘iron carriers’.  These are low-molecular-weight iron-chelating compounds, produced by ‘rhizospheric bacteria’ under iron-limited conditions.  They are small, high affinity iron chelating compounds secreted by microorganisms such as bacteria, fungi etc.  Siderophore usually form a stable hexahendate, octahedral complex with Fe3+  Kloepper et al.(1980) were the first to demonstrate the importance of Siderophores.
  • 5.  Iron is a constituent of protein.  It activates the number of enzymes.  Iron is a vital element require by all living organisms for many cellular processes such as electron transport chain and as a cofactor for many enzymes  It plays an essential role in the nucleic acid metabolism.  It is necessary for synthesis and maintenance of chlorophyll in plants. IRON – AN IMPORTANT ESSENTIAL ELEMENT
  • 6.  Hydroxymate siderophore. eg- Pseudomonas fluorescens  Catecholate siderophore eg-Azotobacter vinelandi  Carboxylate siderophore eg- Rhizobium meliloti TYPES OF SIDEROPHORE
  • 7.
  • 8. HOW SIDEROPHORES WILL FORM??? Iron is often insoluble (oxides, hydroxides) Cells produce siderophores Iron binds to siderophore complex Siderophore binds to recognition site on cell Iron is reduced (Fe3+ into Fe )2+ Iron is taken up by the cell.
  • 9. Siderophore Siderophore receptor site on cell Outside the Cell Inside the Cell Fe3+
  • 10. Siderophore receptor site on cell Outside the Cell Fe3+ Fe3+ Inside the Cell
  • 11. Siderophore receptor site on cell Fe3+ Fe3+ Siderophore Outside the Cell Fe3+ Inside the Cell
  • 12. • Azotobacter • Pseudomonas • Bacillus • Streptomyces •Among thesemicrobes Pseudomonas species isthe activesiderophore producer SIDEROPHORE PRODUCING MICROORGANISM
  • 13. Widely used method for detection of siderophore production by microorganisms in solid medium is the universal Chrome azurol S (CAS) agar plate assay. DETECTION OF SIDEROPHORE PRODUCTION Source: Schwyn, B., and J. B. Neilands.(1987) .Analytical Biochem.3(3):47-56.
  • 15. Role of Siderophore in Agriculture  Soil mineral weathering  Enhancing Growth of plant  Pathogen Biocontrol of plants
  • 17. PGPR Isolates Isolate no. Incubation time(hr) % siderophore units Bacillus coagulans BpN 48 - Bacillus sp. BAC 32 - Bacillus polymyxa BbP 48 - Brevibacillus brevis BbC 52 21 Enterobacter sp. EB-RS-1 52 38 Pseudomonas sp. Z2 24 51 Pseudomonas fluorescens PF11 24 76 Pseudomonas striata PS1 32 - Azospirillum brasilense SP7 72 24 Enterobacter sp. EG-ER-2 48 64 Table 1: Siderophorogenesis by PGPR isolates. Source: Gupta A. & Murali G(2008),Indian journal of Agricultral Research (42) 153-156.
  • 18. Effect of pH on Siderophore production. Source: Ali S.S. & Vidhale N.N(2011), International Journal of Microbiology Research 3(3), 131.
  • 19. Organisms Shoot length(cm) Root length(cm) Germination (Days) Control - 6.2±0.2 4.5±0.19 6±0.11 Test P. fluorescens 12.5±0.12 8.5±0.63 4±0.24 P. aeruginosa 11.5±0.26 7.9±0.39 4±0.18 Organisms Shoot length(cm) Root length(cm) Germination (Days) Control - 6.1±0.23 3.5±0.17 7±0.37 Test P. fluorescens 10.0±0.62 5.1±0.27 5±0.33 P. aeruginosa 9.6±0.49 4.8±0.19 7±0.21 Table 2 : Influence of Pseudomonas sp. inoculation on seed germination and growth of Triticum aestivum Table no. 3 : Influence of Pseudomonas sp. inoculation on seed germination and growth of Apios americana (Potato bean) Source: Bholay. et al.,(2012)IOSR Journal of pharmacy and Biology Science Vol (3),pp 27-32
  • 20. Source: Bholay. et al.,(2012)IOSR Journal of pharmacy and Biology Science Vol 3,pp 27-32 Graphical Representation of Table 2 and Table 3
  • 21. Isolates CAS assay( halo formation in blue agar) Diameter of halo(in cm) 1 + 1.50±0.2 2 + 1.40±0.1 3 - - 4 + 0.78±0.2 5 + 1.30±0.3 6 + 0.60±0.4 7 + 0.80±0.1 8 - - 9 + 0.90±0.4 10 - - 11 + 1.10±0.5 12 + 1.30±0.1 R. meliloti + 1.70±0.3 Table 4: Growth of siderophore on CAS agar plate Source: Verma V., et al.,(2012) Research Journal of Chemical Science Vol (3),pp 27-32
  • 22. Treatment Root length Shoot length % seed germination Initial (mm) Increased in mm Initial (mm) Increased in mm Control 35.0 - 30.7 - 30 Test 42.0 7 70.9 40.2 50 Table 5: Influence of Bacillus shakletonii GN-09 inoculation on Soybean growth Source: Jikare A.M. & Chavan M.D. (2013) International Journal of Research and Biological Science Vol 3, 198-202
  • 23. Organism Pot culture P. Pseudoal aligenes Fe Cu Mn Zn Co Ni Al P- 31.2±0. 0001 0.28±0.0 001 0.38±0.0 006 0.52±0.0 024 0.35±0.0 015 0.42±0.0 001 0.97±0.0 001 P+ 69.8±0. 0001 1.20±0.0 001 9.60±0.0 001 0.93±0.0 014 0.36±0.0 004 0.55±0.0 025 10.72±0. 0002 Table 6: Effect of with and without Siderophore producing microbes on the microelement uptake in root of Cajanas cajan in pot studies. Source : Gamit D.A. & Tank S.K.,(2014) International Journal of Research in Pure and Applied Microbiology .4(1), 20-27.
  • 24. Table 7: Effect of with and without Siderophore producing microbes on the microelement uptake in shoot of Cajanas cajan in pot studies. Organi sm Pot culture P. pseudo alcalig enes Fe Cu Mn Zn Co Ni Al P- 57.6±0.0 001 0.54±0.0 003 2.31±0.0 009 0.69±0.0 033 0.26±0.0 018 0.30±0.0 010 1.09±0.0 001 P+ 123.9±0. 0003 0.98±0.0 003 9.99±0.0 030 1.55±0.0 019 0.67±0.0 021 0.76±0.0 020 25.6±0.0 002 Source : Gamit D.A. & Tank S.K.,(2014) International Journal of Research in Pure and Applied Microbiology .4(1), 20-27.
  • 25. Shoot length(cm) Root length(cm) Number of leaves(cm) Control 7 1.5 13 Iron deprived condition 5 3 10 Iron deprived and siderophore supplemented condition 9 5 19 Shoot length(cm) Root length(cm) Number of leaves(cm) Control 15 4.5 9 Iron deprived condition 10 3 6 Iron deprived and siderophore supplemented condition 17.5 6.5 13 Table 8: Effect of siderophore produce by Pseudomonas flurescens on the growth of Masoor dal Table no. 9: Effect of siderophore produce by Pseudomonas flurescens on the growth of large white lima bean Source:Parmar H.Y.& Chakraborty H. (2016) International Journal of Recent Scientific Research Vol (3) 101-107
  • 26. Fig: Effect of Siderophore on growth of Lens culinaris (Masoor Dal) Source: Parmar H.Y.and Chakraborty H. (2016) International Journal of Recent Scientific Research Vol (3) 101-107
  • 27. No Given Bacterial isolates Root length Shoot length Vigor index Germination% C Control 5.6 3.1 609 70% M1R2 Pseudomonas spp. 9.6 5.2 1480 100% M7R1 Pseudomonas spp. 4.2 5.5 582 60% M6S3 Enterobacter spp. 5.4 6.6 840 70% M7S1 Stenotrophomon as spp 9.0 5.2 1420 100% M7ER1 Microbacterium spp. 9.9 5.3 1292 85% M7ER2 Microbacterium spp. 6.0 3.1 728 80% M12R2 Bacillus spp. 7.8 6.2 1120 80% M12R1 Bacillus spp. 10.6 3.5 930.6 66% Table no 10: Influence of bacterial isolates inoculation on sunflower germination and growth in plate experiment Source: Raval A.A.& Desai P.B.(2015) International Journal of Pharmacy and Life Sciences Vol(6) pp 4803 4811
  • 28. Microorganisms Nodules per plant Nitrogenase activity Dry weight (mg per plant) Total nitrogen (mg per plant) No. Fresh weight(mg) µmolC2H4 plant-1h-1 Shoot Root Shoot Root Bradyrhizobium USDA 3447 90 480 7.5 1110 512 55 14 Bradyrhizobium USDA 3447+ Pseudomonas aeruginosa 150 810 10.2 1600 780 85 25 Bradyrhizobium USDA 3447+P.chrysogenum 173 920 12.4 1815 870 102 29 LSD(P=5%) 20 105 1.8 196 95 19 10 Table no 11 : Effect of siderophore producing organisms on nodulation, nitrogenase activity and plant growth of mung bean Source: Mahmoud A.L. & Abd-alla .M.H (2001) International Journal of Agriculture and Biology, Vol (3), 157-162.
  • 29.  Iron is essential for almost all life, essential for processes such as respiration and DNA synthesis.  Siderophore production by different microorganisms were confirmed by Universal CAS assay. The colour change of CAS from blue to oranged-red resulted from siderophore removal of Fe from dye . Amount of siderophore produced were estimated as percentage of siderophore units as the proportion of CAS colour shifted.  Under aerated conditions at neutral to alkaline pH, inorganic iron is extremely insoluble for bacterial growth. To acquire iron bacterial cell produce siderophore.There is an enormous scope for the application of microbial siderophores for sustanibility of agriculture and environment CONCLUSION
  • 30.  Siderophore which was proved to be useful for plant growth promotion due to increased in root length, shoot length,when grown under iron limiting condition with siderophore supplements.  Siderophore producing microbes stimulated the nodulation, nitrogen fixation and plant growth of many crop. Thus, siderophore can be used in combination with other biofertilizers to increase crop productivity
  • 31. “Feed the soil rather than feeding the plant” THANK YOU