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Genetics:-
Defn :-
 “Genetics is the branch of bioscience which deals with
 the study of the underlying principles of heredity.”
Importance-
• Parent to offspring
• Inherited diseases / medical genetics
• Fertility genetics---- programmed baby
• First test tube baby---- Durga
Historical events:
 Mendel (1865) : discovered principles of heredity.


 Karl Landsteiner (1930): blood groups & immunology


 William Bateson (1903):coined the term Genetics


 Herman Joseph Muller (1946): induction of mutation
 by X- rays

 Arthur korenberg, Severo Ochoa(1959): study on
 chemistry of DNA & RNA
 James watson, Francis Crick: Maurice wilkins(1961):
 structure of DNA

 Marshell Nirenberg, Har Gobind Khorana, Robert
 Holley (1968): “cracking the genetic code” & revelling
 the means by which a gene determines the
 sequence of amino acid in a protein.

     And many more researcher who added the
 drops of their knowledge into ocean of genetics.
Gregor Mendel(1822-1884)
Mendel & Mendelism
 1853 conducted
    experiments on garden
    peas (pisum sativum)
   7 pairs of contrasting
    characters
   Crossed these varieties
    considering one pair of
    contrasting character
   F1 generation: allowed to
    self pollinate
   F2 generation : allowed to
    self pollinate.
On analysis of progeny of generations in garden
 pea, Mendel proposed his concepts.
Mendel’s Laws:

1. Law of unit inheritance:-
   it states that the characters do not blend ; if they do
   not expressed in the first generation they can
   reappear without change in the subsequent
   generations.
2. Law of Segregation:
  It states that the members of gene pair segregate
  and pass to different gametes.



3. Law of independent assortment:
  It states that the members of different gene pairs
  assort independently of one another during
  gametogenesis.
Terms in Genetics
 Allele: One of alternative forms of a gene at a particular
  locus.

 Aneuploid: A set of chromosomes which does not
  contain an exact multiple of haploid sets of
  chromosomes.

 Centromere: Constricted region where sister chromatids
  are attached in mitotic chromosomes. The centromere is
  generally flanked by repetitive DNA sequences and it is
  late to replicate. The centromere is an A-T region of
  about 130 bp. It binds several proteins with high affinity to
  form the kinetochore which is the anchor for the mitotic
  spindle.
 Codon: A group of three consecutive nucleotides in
 mRNA which specifies an amino acid to be
 incorporated in the polypeptide product of the gene.

 Deletion: A mutation resulting in the loss of normal
 DNA sequence. A deletion may be of any size from 1
 nucleotide pair to the loss of most of a chromosome.

 Dominant: An allele is dominant if its effect can be
 observed in the phenotype of a heterozygote.

 Genome: The complete DNA sequence of an
 organism (though it may sometimes be used in the
 sense of mitochondrial genome or nuclear genome).
 Haploid: In the human case, having exactly one
 copy of each of the autosomes and one sex
 chromosome.

 Chimaera (chimera): An animal (or plant) made up
 from a mixture of cells from more than one species.
 Also (in human genetics), an individual made up
 from cells derived from two or more zygotes.

 Mosaic: An individual composed of more than one
 genetically distinguishable cell population derived
 from a single zygote.
 Plasmid: A short circular DNA sequence which is
 replicated within a host bacterium (or yeast) and
 which usually confers a selective advantage (such
 as antibiotic resistance) to the host. Plasmids have
 been engineered to serve as vectors for the
 propagation of DNA which is foreign to the host
 species.

 Polymerase chain reaction (PCR): A technique by
 which a relatively small piece of DNA of known
 sequence can be amplified (often from a complex
 mixture) by successive cycles of strand separation
 followed by DNA synthesis.
Human chromosome
       It is a combination of two words, i.e., “Chroma”-
  means „colour‟ and “Somes”-means „body‟.
       So the coloured thread like bodies present in the
  nucleoplasm of the living cells, which helps in the
  inheritance (transmission) of characters in form of Genes
  from generation to generation are known as
  CHROMOSOMES.
 1956- Tjio & Levan : demonstrated 46 chromosomes in
  human
 22 pairs – autosomes
 1 pair - sex chromosome (XX / XY)
Morphology
 Uncoiled in interphase
 chromatin granules : some remain coiled
 Euchromatin / heterochromatin
 Rod like – end of interphase
 Centromere
 p- arm , q- arm
 Two sister chromatid-
      in late prophase
 Telomers
 Satellite bodies
Classification of Chromosomes
According to position of centromere
According to “Denever system” of classification

Group   Chromosomes     Description

A       1–3             Largest; 1 and 3 are metacentric but 2 is submetacentric

B       4,5             Large; submetacentric with two arms very different in
                        size
C       6–12,X          Medium size; submetacentric
D       13–15           Medium size; acrocentric with satellites
E       16–18           Small; 16 is metacentric but 17 and 18 are
                        submetacentric
F       19,20           Small; metacentric
G       21,22,Y         Small; acrocentric, with satellites on 21 and 22 but not
                        on the Y
Autosomes are numbered from largest to smallest, except that chromosome 21 is
smaller than chromosome 22.
 Paris nomencleature (1971,75)
 More accurate way of identification of chromosome
 based on various banding pattern.
Karyotyping / Karyotype
Definition:-
      Photomicrograph of an individual‟s
 chromosomes arranged in a standard manner.

Indications:
1) Turner Syndrome (45,X and variants)
2) Klinefelter Syndrome (47,XXY and variants)
3) Down Syndrome (Trisomy 21, translocation and
   mosaicism)
4) Couples with infertility of unknown cause
5) Couples with recurrent spontaneous abortions
6) Children with ambiguous genitalia
7) Female children with inguinal hernia
8) Children with mental subnormality and dysmorphic
    features
9) Suspected cases of Fragile X syndrome, Fanconi
    anaemia, Ataxia, Telangiectasia, Bloom syndrome
    etc.
10) Bone marrow analysis in leukemias (blood cancer).
11) Prenatal Diagnosis of fetal chromosome disorders in
    high-risk pregnancies.
Karyotyping Procedure
                 Blood sample
               5ml of venous blood
                   (centrifuge)

                 Nutrient medium
              (phytohaemagglutinin)

         Stimulates T- lymphocyte to divide
Culture at 370C for 3 days

Colchicine added to arrest cell cycle in metaphase

  Add hypotonic saline- causes swelling of cells

                    Cell lyses

            Mounted on slide & stained
(cells are dropped on a cold, clean slide, to cause
          rupture and stained with giemsa)
Photomicrograph

   Arrange chromosome in
decreasing order of their length
Methods of study of chromosomes
A) Chromosome Banding
• Q banding
• G banding
• R banding
B) Flow cytometry

C) Molecular cytogenetics: FISH
Barr body / Sex Chromatin
Introduction
1949- Barr & Bertram.
Found chromatin mass in female cat neurons.
They found it only in females sex.

Best site to examine - Buccal mucosa.
Procedure of examining Barr body
    Scrapping from inner side of cheek.

         Smeared evenly on slide

              Fixed in alcohol

            Stained with thionin

       Observed under microscope.
No. of Barr bodies = no. of X chromosomes – 1.

eg. Individual with 47,XXX complement
No. of barr bodies are 3-1= 2.
In Turners syndrome (45,XO) it is 0.

 Barr body represents one of two X chromosomes of
  female cell.
 It remains condensed & inactive in interphase.
Lyon’s hypothesis
It states that:

1) In female somatic cells, only one X chromosome is
   active. The second is inactive, condensed and
   appears in the form of sex chromatin in interphase.




2) Inactivation occurs early in embryonic life.
3) Inactivation is random but fixed.
        inactive X can be maternal or paternal in
    different cells of same individual.
        but once decision is made then it is followed by
    it‟s descendent cells.

•      It is detected in blastocyst at 9-12 days.
•      First in syncytotrophoblast, then chorionic villi
    then in yolk sac
•   In embryo proper- after 18 days.
Mechanism of inactivation of X chromosome
Methylation of DNA. Mainly cytosine.
5- methyl cytosine at certain sites in DNA.

Inactivation centre:-
Long arm of X chromosome.



In some translocation involving X chromosome &
  autosomes. The intact X chromosome forms Barr body.
Genetic significance of X inactivation
1) Dosage compensation
2) Variability of expression
3) Mosaicism
introduction, terms, mendelian law, chromosome,karyotyping-Dr.Gourav

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introduction, terms, mendelian law, chromosome,karyotyping-Dr.Gourav

  • 1.
  • 2. Genetics:- Defn :- “Genetics is the branch of bioscience which deals with the study of the underlying principles of heredity.” Importance- • Parent to offspring • Inherited diseases / medical genetics • Fertility genetics---- programmed baby • First test tube baby---- Durga
  • 3. Historical events:  Mendel (1865) : discovered principles of heredity.  Karl Landsteiner (1930): blood groups & immunology  William Bateson (1903):coined the term Genetics  Herman Joseph Muller (1946): induction of mutation by X- rays  Arthur korenberg, Severo Ochoa(1959): study on chemistry of DNA & RNA
  • 4.  James watson, Francis Crick: Maurice wilkins(1961): structure of DNA  Marshell Nirenberg, Har Gobind Khorana, Robert Holley (1968): “cracking the genetic code” & revelling the means by which a gene determines the sequence of amino acid in a protein. And many more researcher who added the drops of their knowledge into ocean of genetics.
  • 6. Mendel & Mendelism  1853 conducted experiments on garden peas (pisum sativum)  7 pairs of contrasting characters  Crossed these varieties considering one pair of contrasting character  F1 generation: allowed to self pollinate  F2 generation : allowed to self pollinate.
  • 7. On analysis of progeny of generations in garden pea, Mendel proposed his concepts. Mendel’s Laws: 1. Law of unit inheritance:- it states that the characters do not blend ; if they do not expressed in the first generation they can reappear without change in the subsequent generations.
  • 8. 2. Law of Segregation: It states that the members of gene pair segregate and pass to different gametes. 3. Law of independent assortment: It states that the members of different gene pairs assort independently of one another during gametogenesis.
  • 9. Terms in Genetics  Allele: One of alternative forms of a gene at a particular locus.  Aneuploid: A set of chromosomes which does not contain an exact multiple of haploid sets of chromosomes.  Centromere: Constricted region where sister chromatids are attached in mitotic chromosomes. The centromere is generally flanked by repetitive DNA sequences and it is late to replicate. The centromere is an A-T region of about 130 bp. It binds several proteins with high affinity to form the kinetochore which is the anchor for the mitotic spindle.
  • 10.  Codon: A group of three consecutive nucleotides in mRNA which specifies an amino acid to be incorporated in the polypeptide product of the gene.  Deletion: A mutation resulting in the loss of normal DNA sequence. A deletion may be of any size from 1 nucleotide pair to the loss of most of a chromosome.  Dominant: An allele is dominant if its effect can be observed in the phenotype of a heterozygote.  Genome: The complete DNA sequence of an organism (though it may sometimes be used in the sense of mitochondrial genome or nuclear genome).
  • 11.  Haploid: In the human case, having exactly one copy of each of the autosomes and one sex chromosome.  Chimaera (chimera): An animal (or plant) made up from a mixture of cells from more than one species. Also (in human genetics), an individual made up from cells derived from two or more zygotes.  Mosaic: An individual composed of more than one genetically distinguishable cell population derived from a single zygote.
  • 12.  Plasmid: A short circular DNA sequence which is replicated within a host bacterium (or yeast) and which usually confers a selective advantage (such as antibiotic resistance) to the host. Plasmids have been engineered to serve as vectors for the propagation of DNA which is foreign to the host species.  Polymerase chain reaction (PCR): A technique by which a relatively small piece of DNA of known sequence can be amplified (often from a complex mixture) by successive cycles of strand separation followed by DNA synthesis.
  • 13. Human chromosome It is a combination of two words, i.e., “Chroma”- means „colour‟ and “Somes”-means „body‟. So the coloured thread like bodies present in the nucleoplasm of the living cells, which helps in the inheritance (transmission) of characters in form of Genes from generation to generation are known as CHROMOSOMES.  1956- Tjio & Levan : demonstrated 46 chromosomes in human  22 pairs – autosomes  1 pair - sex chromosome (XX / XY)
  • 14. Morphology  Uncoiled in interphase  chromatin granules : some remain coiled  Euchromatin / heterochromatin  Rod like – end of interphase  Centromere  p- arm , q- arm  Two sister chromatid- in late prophase  Telomers  Satellite bodies
  • 15. Classification of Chromosomes According to position of centromere
  • 16. According to “Denever system” of classification Group Chromosomes Description A 1–3 Largest; 1 and 3 are metacentric but 2 is submetacentric B 4,5 Large; submetacentric with two arms very different in size C 6–12,X Medium size; submetacentric D 13–15 Medium size; acrocentric with satellites E 16–18 Small; 16 is metacentric but 17 and 18 are submetacentric F 19,20 Small; metacentric G 21,22,Y Small; acrocentric, with satellites on 21 and 22 but not on the Y Autosomes are numbered from largest to smallest, except that chromosome 21 is smaller than chromosome 22.
  • 17.
  • 18.  Paris nomencleature (1971,75)  More accurate way of identification of chromosome based on various banding pattern.
  • 19. Karyotyping / Karyotype Definition:- Photomicrograph of an individual‟s chromosomes arranged in a standard manner. Indications: 1) Turner Syndrome (45,X and variants) 2) Klinefelter Syndrome (47,XXY and variants) 3) Down Syndrome (Trisomy 21, translocation and mosaicism) 4) Couples with infertility of unknown cause
  • 20. 5) Couples with recurrent spontaneous abortions 6) Children with ambiguous genitalia 7) Female children with inguinal hernia 8) Children with mental subnormality and dysmorphic features 9) Suspected cases of Fragile X syndrome, Fanconi anaemia, Ataxia, Telangiectasia, Bloom syndrome etc. 10) Bone marrow analysis in leukemias (blood cancer). 11) Prenatal Diagnosis of fetal chromosome disorders in high-risk pregnancies.
  • 21. Karyotyping Procedure Blood sample 5ml of venous blood (centrifuge) Nutrient medium (phytohaemagglutinin) Stimulates T- lymphocyte to divide
  • 22. Culture at 370C for 3 days Colchicine added to arrest cell cycle in metaphase Add hypotonic saline- causes swelling of cells Cell lyses Mounted on slide & stained (cells are dropped on a cold, clean slide, to cause rupture and stained with giemsa)
  • 23. Photomicrograph Arrange chromosome in decreasing order of their length
  • 24. Methods of study of chromosomes A) Chromosome Banding • Q banding • G banding • R banding B) Flow cytometry C) Molecular cytogenetics: FISH
  • 25. Barr body / Sex Chromatin Introduction 1949- Barr & Bertram. Found chromatin mass in female cat neurons. They found it only in females sex. Best site to examine - Buccal mucosa.
  • 26. Procedure of examining Barr body Scrapping from inner side of cheek. Smeared evenly on slide Fixed in alcohol Stained with thionin Observed under microscope.
  • 27. No. of Barr bodies = no. of X chromosomes – 1. eg. Individual with 47,XXX complement No. of barr bodies are 3-1= 2. In Turners syndrome (45,XO) it is 0.  Barr body represents one of two X chromosomes of female cell.  It remains condensed & inactive in interphase.
  • 28. Lyon’s hypothesis It states that: 1) In female somatic cells, only one X chromosome is active. The second is inactive, condensed and appears in the form of sex chromatin in interphase. 2) Inactivation occurs early in embryonic life.
  • 29. 3) Inactivation is random but fixed. inactive X can be maternal or paternal in different cells of same individual. but once decision is made then it is followed by it‟s descendent cells. • It is detected in blastocyst at 9-12 days. • First in syncytotrophoblast, then chorionic villi then in yolk sac • In embryo proper- after 18 days.
  • 30. Mechanism of inactivation of X chromosome Methylation of DNA. Mainly cytosine. 5- methyl cytosine at certain sites in DNA. Inactivation centre:- Long arm of X chromosome. In some translocation involving X chromosome & autosomes. The intact X chromosome forms Barr body.
  • 31. Genetic significance of X inactivation 1) Dosage compensation 2) Variability of expression 3) Mosaicism