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Antifreeze Protein
• Antifreeze proteins (AFPs) are a group of proteins that
protect organisms living in extremely cold climates from
deep freezing temperatures. These are observed in
vertebrates, invertebrates, plants, bacteria, and fungi.
• These proteins are able to utilize their unique structures
that hinder freezing by binding to and preventing young
ice crystals from growing.
• AFPs can effectively protect organisms from damage
during freezing conditions by a process termed thermal
hysteresis. This phenomenon is the presence of a
hysteresis gap, that is better explained by the lowering of
the freezing point non-colligatively, leaving the melting
point unchanged.
What are AFP’s?
History
In the 1950s, Norwegian scientist Scholander explained, how Arctic
fish can survive in water colder than the freezing point of their blood.
His experiments led him to believe there was “antifreeze” in the
blood of Arctic fish.
Then in the late 1960s, animal biologist Arthur De-Vries was able to
isolate the antifreeze protein Antarctic fish. In 1970, De-Vries worked
with Robert Feeney to characterize the chemical and physical
properties of antifreeze proteins.
In 1992, Griffith et al. documented their discovery of AFP in winter
rye leaves. Around the same time, Urrutia, Duman and Knight (1992)
documented thermal hysteresis protein in angiosperms.
The next year, Duman and Olsen noted AFPs had also been
discovered in over 23 species of angiosperm including ones eaten
by humans and also present in fungi and bacteria as well.
Evolution:
The remarkable diversity of AFPs suggests the different types evolved
recently in response to sea level glaciation occurring 1-2 million years
ago in the Northern hemisphere and 10-30 million years ago in
Antarctica.
There are two reasons why many protein types carry same function:
– Even ice is uniformly composed by water molecules but still have
different binding sites so, different AFPs react with sites.
– The five types of AFPs differ in their primary structure of A.A when
folds into a functioning proteins, may share similarities in their 3-D
or tertiary structure, provides the same binding with ice.
Name change:
Recently antifreeze proteins are re-labeled as ice structuring
proteins to show their accurate function and to dispose of any
relation between AFPs and automotive antifreeze(ethylene glycol)
which are completely separate entities, and show loose similarity
only in their function.
Properties
• Thermal Hysteresis:
It results from the lowering of the apparent freezing temperature
without actually affecting the melting point. This causes AFPs to be
200 to 300 times more effective at freezing point depressions than in
ideal solutions.
• Pathogenesis:
Most of the antifreeze proteins sequenced has shown that they are
homologous to pathogenesis-related proteins. They are released
into the apoplast in response to a pathogenic infection.
• Freeze tolerance versus freeze avoidance:
Freeze avoidant: These species are
able to prevent their body fluids from
freezing altogether. Generally, the
AFP function may be overcome at
extremely cold temperatures, leading
to rapid ice growth and death.
Freeze tolerant: These species are
able to survive body fluid freezing.
Some freeze tolerant species are
thought to use AFPs as
cryoprotectants to prevent the
damage of freezing, but not freezing
altogether.
Protein Species Structural
type
Protein
homology
Ice binding
site
Fish type I AFP
Right eye
flounder, sculpins
single, long,
amphipathic
and alpha helix
undetected
Thr and residues
associated
Fish type II AFP
sea raven,
rainbow smelt,
Atlantic herring
globular; smelt
and herring are
Ca2+ dependent
galactose-
binding; +- C-
type lectins in
herring
with it
corresponds to
Ca2+ dependent
binding site
Fish type III
AFP eel pouts such as
ocean pout
globular with
one flattened
surface
undetected
residues on and
flanking flat
surface
Fish type IV
AFP
longhorn sculpin antiparallel helix
bundle
low-density
lipoprotein
receptor-
binding domain
E3
unknown
Mechanism of action
• Crystallization involves two major steps: nucleation,
which is the formation of a stable crystal nucleus and
propagation of ice crystals by the growth of the nucleus.
• Nucleation generally occurs around a foreign molecule
and re-crystallization of ice occurs when the temperature
fluctuates.
• These are more potent to cause physical damage to
tissues and cells.
• AFPs are thought to inhibit growth by an adsorption
inhibition mechanism. They adsorb to non-basal
planes of ice, inhibiting thermodynamically-favored ice
growth.
• The presence of a flat, rigid surface in some
AFPs seems to facilitate its interaction with ice
via Van-der-Waals force surface
complementarity.
Mechanism of action
Binding to Ice
• Normally, ice crystals grown in solution only exhibit the
basal (0001) and prism faces (1010), and appear as round
and flat discs.
• However, it appears the presence of AFPs exposes other
faces. It now appears the ice surface 2021 is the preferred
binding surface, at least for AFP type I.
• Through studies on type I AFP, ice and AFP were initially
thought to interact through hydrogen bonding.
• However, when parts of the protein thought to facilitate this
hydrogen bonding were mutated, the hypothesized
decrease in antifreeze activity was not observed.
• Recent data suggest hydrophobic interactions
could be the main contributor.
• It is difficult to discern the exact mechanism of
binding because of the complex water-ice
interface.
• Currently, attempts to uncover the precise mechanism
are being made through use of molecular modelling
programs.
Antifreeze Function
Structural and function study on
the antifreeze protein
from Pseudopleuronectes
americanus the antifreeze
mechanism of the type-I AFP
molecule was shown the binding
to an ice nucleation structure in a
zipper-like fashion through
hydrogen bonding of
the hydroxyl groups of its four
Thr residues to the oxygen along
the [0112] direction in ice lattice,
subsequently stop the growth of
ice pyramidal planes to depress
the freezing point.
• The above mechanism can be used to elucidate
the structure-function relationship of other
antifreeze proteins with the following two
common features:
Antifreeze Function
recurrence of a Thr residue (or any other polar amino acid
residue whose side-chain can form a hydrogen bond with water)
in an 11-amino-acid period along the sequence concerned, and
a high percentage of an Ala residue component therein.
1-
2-
Antifreeze protein

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Antifreeze protein

  • 2. • Antifreeze proteins (AFPs) are a group of proteins that protect organisms living in extremely cold climates from deep freezing temperatures. These are observed in vertebrates, invertebrates, plants, bacteria, and fungi. • These proteins are able to utilize their unique structures that hinder freezing by binding to and preventing young ice crystals from growing. • AFPs can effectively protect organisms from damage during freezing conditions by a process termed thermal hysteresis. This phenomenon is the presence of a hysteresis gap, that is better explained by the lowering of the freezing point non-colligatively, leaving the melting point unchanged. What are AFP’s?
  • 3. History In the 1950s, Norwegian scientist Scholander explained, how Arctic fish can survive in water colder than the freezing point of their blood. His experiments led him to believe there was “antifreeze” in the blood of Arctic fish. Then in the late 1960s, animal biologist Arthur De-Vries was able to isolate the antifreeze protein Antarctic fish. In 1970, De-Vries worked with Robert Feeney to characterize the chemical and physical properties of antifreeze proteins. In 1992, Griffith et al. documented their discovery of AFP in winter rye leaves. Around the same time, Urrutia, Duman and Knight (1992) documented thermal hysteresis protein in angiosperms. The next year, Duman and Olsen noted AFPs had also been discovered in over 23 species of angiosperm including ones eaten by humans and also present in fungi and bacteria as well.
  • 4. Evolution: The remarkable diversity of AFPs suggests the different types evolved recently in response to sea level glaciation occurring 1-2 million years ago in the Northern hemisphere and 10-30 million years ago in Antarctica. There are two reasons why many protein types carry same function: – Even ice is uniformly composed by water molecules but still have different binding sites so, different AFPs react with sites. – The five types of AFPs differ in their primary structure of A.A when folds into a functioning proteins, may share similarities in their 3-D or tertiary structure, provides the same binding with ice. Name change: Recently antifreeze proteins are re-labeled as ice structuring proteins to show their accurate function and to dispose of any relation between AFPs and automotive antifreeze(ethylene glycol) which are completely separate entities, and show loose similarity only in their function.
  • 5. Properties • Thermal Hysteresis: It results from the lowering of the apparent freezing temperature without actually affecting the melting point. This causes AFPs to be 200 to 300 times more effective at freezing point depressions than in ideal solutions. • Pathogenesis: Most of the antifreeze proteins sequenced has shown that they are homologous to pathogenesis-related proteins. They are released into the apoplast in response to a pathogenic infection. • Freeze tolerance versus freeze avoidance: Freeze avoidant: These species are able to prevent their body fluids from freezing altogether. Generally, the AFP function may be overcome at extremely cold temperatures, leading to rapid ice growth and death. Freeze tolerant: These species are able to survive body fluid freezing. Some freeze tolerant species are thought to use AFPs as cryoprotectants to prevent the damage of freezing, but not freezing altogether.
  • 6. Protein Species Structural type Protein homology Ice binding site Fish type I AFP Right eye flounder, sculpins single, long, amphipathic and alpha helix undetected Thr and residues associated Fish type II AFP sea raven, rainbow smelt, Atlantic herring globular; smelt and herring are Ca2+ dependent galactose- binding; +- C- type lectins in herring with it corresponds to Ca2+ dependent binding site Fish type III AFP eel pouts such as ocean pout globular with one flattened surface undetected residues on and flanking flat surface Fish type IV AFP longhorn sculpin antiparallel helix bundle low-density lipoprotein receptor- binding domain E3 unknown
  • 7. Mechanism of action • Crystallization involves two major steps: nucleation, which is the formation of a stable crystal nucleus and propagation of ice crystals by the growth of the nucleus. • Nucleation generally occurs around a foreign molecule and re-crystallization of ice occurs when the temperature fluctuates. • These are more potent to cause physical damage to tissues and cells. • AFPs are thought to inhibit growth by an adsorption inhibition mechanism. They adsorb to non-basal planes of ice, inhibiting thermodynamically-favored ice growth.
  • 8. • The presence of a flat, rigid surface in some AFPs seems to facilitate its interaction with ice via Van-der-Waals force surface complementarity. Mechanism of action
  • 9. Binding to Ice • Normally, ice crystals grown in solution only exhibit the basal (0001) and prism faces (1010), and appear as round and flat discs. • However, it appears the presence of AFPs exposes other faces. It now appears the ice surface 2021 is the preferred binding surface, at least for AFP type I. • Through studies on type I AFP, ice and AFP were initially thought to interact through hydrogen bonding. • However, when parts of the protein thought to facilitate this hydrogen bonding were mutated, the hypothesized decrease in antifreeze activity was not observed.
  • 10. • Recent data suggest hydrophobic interactions could be the main contributor. • It is difficult to discern the exact mechanism of binding because of the complex water-ice interface.
  • 11. • Currently, attempts to uncover the precise mechanism are being made through use of molecular modelling programs.
  • 12. Antifreeze Function Structural and function study on the antifreeze protein from Pseudopleuronectes americanus the antifreeze mechanism of the type-I AFP molecule was shown the binding to an ice nucleation structure in a zipper-like fashion through hydrogen bonding of the hydroxyl groups of its four Thr residues to the oxygen along the [0112] direction in ice lattice, subsequently stop the growth of ice pyramidal planes to depress the freezing point.
  • 13. • The above mechanism can be used to elucidate the structure-function relationship of other antifreeze proteins with the following two common features: Antifreeze Function recurrence of a Thr residue (or any other polar amino acid residue whose side-chain can form a hydrogen bond with water) in an 11-amino-acid period along the sequence concerned, and a high percentage of an Ala residue component therein. 1- 2-