This document describes a laboratory experiment on estimating total protein concentration using the Lowry method. It involves preparing reagents, running a standard curve with bovine serum albumin (BSA) standards, and measuring absorbance to generate a calibration curve. Absorbance readings of unknown samples are then used to determine their protein concentrations based on the standard curve. Key steps include reacting protein samples with an alkaline copper tartrate solution and Folin reagent to produce a blue color complex, whose intensity is proportional to protein amount. The experiment aims to familiarize students with the Lowry method and generating standard curves for protein quantification.
It is an important tool in biochemical research. Which through rapid spinning imposes high centrifugal forces on suspended particles, or even molecules in solution, and causes separations of such matter on the basis of differences in weight.
It is an important tool in biochemical research. Which through rapid spinning imposes high centrifugal forces on suspended particles, or even molecules in solution, and causes separations of such matter on the basis of differences in weight.
Separation is brought about through molecular sieving technique, based on the molecular size of the substances. Gel material acts as a "molecular sieve”.
Gel is a colloid in a solid form (99% is water).
It is important that the support media is electrically neutral.
Different types of gels which can be used are; Agar and Agarose gel, Starch, Sephadex, Polyacrylamide gels.
It is a subtype of the gel electrophoresis whereby the normal gel is replaced with polyacrylamide gels used as support media.
Gels are made by free radical-induced polymerization of acrylamide and N,N’-Methylenebisacrylamide.
It is the most widely used technique of electrophoresis.
PAGE is a subtype of the gel electrophoresis whereby the normal gel is replaced with polyacrylamide gels use as the support matrix.
widely used and has very much importance.
COMPLETE PROCEDURE & USES are described in the slide.
Centrifugation principle and types by Dr. Anurag YadavDr Anurag Yadav
concept of cnetrifugation,
basic Principle
centrifugal force
types of centrifugation based on use and rotor type
application of the each type of centrifuge
Ultracentrifuge in detail
application in general
The direct microinjection of DNA into the cytoplasm or nuclei of cultured cells is sometimes used as a transfection method. It is highly efficient at the level of individual cells. The most significant use of this technique is introduction of DNA into the oocytes, eggs and embryos of animals, either for transient expression analysis (e.g. in fish or Xenopus) or to generate transgenic animals (e.g. mice, Drosophilathis). The procedure is time consuming and only a small number of cells can be treated. Originally, this technique was used for the transformation of cells that were resistant to any other method of transfection. Stable transfection efficiencies are extremely high, in the order of 20%, and very small quantities of DNA are sufficient.
This technique provides direct nuclear delivery of DNA avoiding the endogenous pathway and also ensures that the DNA is delivered intact. Microinjection is suitable for the introduction of large vectors such as YACs into the pronuclei of fertilized mouse eggs. DNA delivered in this manner must be very pure so it needs a lot of preparation as it is necessary to avoid fragmentation. Shearing can also occur in the delivery needle, and large DNA fragments are often protected by suspension in a high salt buffer and/or mixing with polyamines and other protective agents. Now transfection of cultured cells is automated with computer-controlled micromanipulation and microinjection processes as well as the automated production of injection capillaries and the standardization of cell preparation procedure.
Separation is brought about through molecular sieving technique, based on the molecular size of the substances. Gel material acts as a "molecular sieve”.
Gel is a colloid in a solid form (99% is water).
It is important that the support media is electrically neutral.
Different types of gels which can be used are; Agar and Agarose gel, Starch, Sephadex, Polyacrylamide gels.
It is a subtype of the gel electrophoresis whereby the normal gel is replaced with polyacrylamide gels used as support media.
Gels are made by free radical-induced polymerization of acrylamide and N,N’-Methylenebisacrylamide.
It is the most widely used technique of electrophoresis.
PAGE is a subtype of the gel electrophoresis whereby the normal gel is replaced with polyacrylamide gels use as the support matrix.
widely used and has very much importance.
COMPLETE PROCEDURE & USES are described in the slide.
Centrifugation principle and types by Dr. Anurag YadavDr Anurag Yadav
concept of cnetrifugation,
basic Principle
centrifugal force
types of centrifugation based on use and rotor type
application of the each type of centrifuge
Ultracentrifuge in detail
application in general
The direct microinjection of DNA into the cytoplasm or nuclei of cultured cells is sometimes used as a transfection method. It is highly efficient at the level of individual cells. The most significant use of this technique is introduction of DNA into the oocytes, eggs and embryos of animals, either for transient expression analysis (e.g. in fish or Xenopus) or to generate transgenic animals (e.g. mice, Drosophilathis). The procedure is time consuming and only a small number of cells can be treated. Originally, this technique was used for the transformation of cells that were resistant to any other method of transfection. Stable transfection efficiencies are extremely high, in the order of 20%, and very small quantities of DNA are sufficient.
This technique provides direct nuclear delivery of DNA avoiding the endogenous pathway and also ensures that the DNA is delivered intact. Microinjection is suitable for the introduction of large vectors such as YACs into the pronuclei of fertilized mouse eggs. DNA delivered in this manner must be very pure so it needs a lot of preparation as it is necessary to avoid fragmentation. Shearing can also occur in the delivery needle, and large DNA fragments are often protected by suspension in a high salt buffer and/or mixing with polyamines and other protective agents. Now transfection of cultured cells is automated with computer-controlled micromanipulation and microinjection processes as well as the automated production of injection capillaries and the standardization of cell preparation procedure.
Serum Protein and Albumin-Globulin RatioASHIKH SEETHY
For MBBS Biochemistry Practical. Explains various methods of protein estimation and estimation of AG ratio, conditions leading to alterations in AG ratio etc.
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This simple laboratory PPT was designed for UPES-SOHST students as a guide for illustrating the experiment mentioned above, kindly share to help someone learn
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The Determination of Total Protein Using the LAMBDA UV/Vis Spectrophotometer:...PerkinElmer, Inc.
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Pay attention to APA formatting, spelling, and grammar. Your similarity index/plagiarism score must be below 10%. Higher scores may impact your grade.
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Amino Acids and Proteins
Structure of -amino acids
The 20 Amino Acids Found in Proteins
Formation of a Peptide
Polypeptide backbone
9.bin
10.bin
Proteins are made of 20 amino acids linked by peptide bonds
Polypeptide backbone is the repeating sequence of the N-C-C-N-C-C… in the peptide bond
The side chain or R group is not part of the backbone or the peptide bond
ProteinsMake up about 15% of the cellHave many functions in the cellEnzymesStructuralTransportMotorStorageSignalingReceptorsGene regulationSpecial functions
Motor- myosin
Storage- ferritin, transport- hemoglobyn
*
Importance of ProteinsMain catalysts in biochemistry: enzymes (involved in virtually every biochemical reaction)Structural components of cells (both inside and outside of cells in tissues)Regulatory functions (if/when a cell divides, which genes are expressed, etc.)Carrier and transport functions (ions, small molecules)
Levels of Protein StructurePrimary Structure - amino acid sequence in a polypeptide
Secondary Structure - local spatial arrangement of a polypeptide’s backbone atoms (without regard to
side chain conformation)
Tertiary Structure - three-dimensional structure of entire polypeptide
Quaternary Structure - spatial arrangement of subunits of proteins composed of multiple polypeptides (protein complexes)
3-D Structure of Myoglobin
People with proteinuria have urine containing an abnormal amount of protein. The condition is often a sign of kidney disease.
Healthy kidneys do not allow a significant amount of protein to pass through their filters. Kidney disease often has no early symptoms. One of its first signs may be proteinuria that's discovered by a urine test done during a routine physical exam. Blood tests will then be done to see how well the kidneys are working.
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Proteinuria (Protein in Urine)
Proteinuria (Protein in Urine)
Methods of Protein Estimation
Quantitative
Biruet methodBradford methodFolin-Lowry methodKjeldahl methodBicinchoninic acid method (BCA method)UV methodFlourimetric methodMass spectrometry
Protein Determination assay
Bicinch ...
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Lowry method for protein estimation
1. BIOCHEMISTRY LAB
Title: Total Protein Estimation by Lowry Method
Dr. Abhay Khandagle
Head, Postgraduate Department and Research Centre in Zoology
Prof. Ramkrishna More Arts, Commerce & Science College
INDIA
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); Mob.-+91 9370333535ajkhandagle@gmail.com 1
2. Objectives
• To deter i e the o e tratio of protei s y Lowry’s method.
• To prepare the required lab reagents.
• To construct standard graph on paper.
• To develop standard graph with Spreadsheet.
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); ajkhandagle@gmail.com Mob.-+91 9370333535 2
3. PROTEIN ESTIMATION BY LOWRY METHOD
Introduction: Lowry’s assay for total protein estimation is one of the most commonly used colorimetric assays.
The Biochemist Oliver H. Lowry developed the reagent in the 1940s. His publication on the same in the year1951
was highly cited and has been used in protein labs.
Principle:
The principle of this method is based on two reactions leading to colour complex formation. Firstly, the Biuret
reaction in which Cu2+ of the reaction mixture reacts with the peptide bond of proteins under alkaline conditions
resulting in their reduction to cuprous ions (Cu+), and Lowry’s reaction in which the Folin Ciocaltaeu reagent,
which contains phosphomolybdic complex which is a mixture of sodium tungstate, sodium molybdate and
phosphate, along with copper sulphate solution and the protein forms a blue purple colour which can be
assessed by measuring the absorbance at 650-700nm. The phenolic group of the aminoacid (tyrosine and
tryptophan) residues will produce a blue purple colour due to the reduction of phosphomolybdotungstate to
hetero-polymolybdenum blue by the copper catalysed oxidation of the amino acids and its intensity depends on
the amount of these aromatic amino acids present. The blue purple colour formed thus differ from protein to
protein.The blue purple color is formed of aromatic amino acids tryptophan and tyrosine. The reaction is pH
dependent and works best in alkaline conditions with pH between 9 and 10.5
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); Mob.-+91 9370333535ajkhandagle@gmail.com 3
4. PROTEIN ESTIMATION BY LOWRY METHOD
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); Mob.-+91 9370333535ajkhandagle@gmail.com 4
5. PROTEIN ESTIMATION BY LOWRY METHOD
Advantages
It is a sensitive assay which requires no digestion of protein.
It is 10 or 20 times more sensitive as compared with ultraviolet absorption at 280 nm.
It is more specific and less interrupted by turbidity,
It is significantly more sensitive than the ninhydrin reaction and biuret reaction.
It is simple to perform and can be easily used on small scale in the labs.
Disadvantages
The amount of colour developed differs from protein to protein,
It is less constant than the biuret reaction, but more constant than the absorption at 280 nm.
The color is not exactingly proportional to concentration.
Applications:
It is used in measurement of protein during enzyme fractionations, mixed tissue proteins, measurement of
very small absolute amounts of protein, or highly diluted protein and analyses of large numbers of similar
protein samples.
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); Mob.-+91 9370333535ajkhandagle@gmail.com 5
6. PROTEIN ESTIMATION BY LOWRY METHOD
Reagents for Lowry method:
Lowry Reagent (or) alkaline copper sulfate solution:
Mix 50ml of solution A with 1 ml of solution B, just prior to use.
Solution A : 2% sodium carbonate in 0.1N NaOH.
Solution B : 0.5% copper sulfate solution in 1% sodium potassium tartarate solution (to be prepared fresh)
Folin-Ciocalteau reagent: This is commercially available and has to be diluted with equal
volume of water just before use.
Standard protein solution: Dissolve 10mg of BSA (as it is easily available, cheap and with improved
purity) in 100ml of distilled water in a volumetric flask.
(for concentration-100 µg/ml)
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); Mob.-+91 9370333535ajkhandagle@gmail.com 6
7. PROTEIN ESTIMATION BY LOWRY METHOD
Procedure:
Pipette out into clean glass tubes 0.2, 0.4, 0.6, 0.8, and 1.0 of the protein solution and make
up the total volume to 2ml with addition of distilled water.
To each tube add 4ml of the alkaline-copper sulfate solution (Reagent C), mix well and allow
to stand at room temperature for 10 minutes.
Pipette out 0.5ml of the FCR reagent and add into each tube, mix immediately after each
addition.
Allow the tubes to stand for 30 minutes.
Measure the Absorbance of the blue Purple color formed at 660nm.
Prepare a blank tube with 2 ml of distilled water(instead of the standard protein) followed
by all additions mentioned above and with 1ml of unknown solution (Sample) and perform
the additions as in case of the standards.
Prepare a calibration curve with mg of protein on X-axis and O.D. (A660nm) on Y-axis and
determine the amount of protein present in a given unknown sample.
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); Mob.-+91 9370333535ajkhandagle@gmail.com 7
8. PROTEIN ESTIMATION BY LOWRY METHOD
Experimental Set up:
Concentration of Standard Protein (BSA) = 100 µg/ml
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); Mob.-+91 9370333535ajkhandagle@gmail.com 8
Test
Tube
Vol of Std.
BSA (ml)
Conc of
BSA
(µg)
Vol of
Water
(ml)
Vol of
Alk.copper
sulphate –
Reagent C ml)
Incubate
@ RT
Vol of FCR
Reagent
(ml)
Incubate
@ RT in
Dark
A660nm
1 0.0 (blank) 0.0 2.0 4 10 Min 0.5 30 Min
2 0.2 20 1.8 4 10 Min 0.5 30 Min
3 0.4 40 1.6 4 10 Min 0.5 30 Min
4 0.6 60 1.4 4 10 Min 0.5 30 Min
5 0.8 80 1.2 4 10 Min 0.5 30 Min
6 1.0 100 1.0 4 10 Min 0.5 30 Min
7 1.2 120 0.8 4 10 Min 0.5 30 Min
Set up for Sample
S-1 1.0 ? 1.0 4 10 Min 0.5 30 Min
S-2 1.0 ? 1.0 4 10 Min 0.5 30 Min
9. How to plot the graph…
• To determine the total protein concentration using graph paper plot.
1. Plot the values of protein concentrations on X axis and the values of
absorbance on Y axis of a graph paper.
2. Construct a straight line through the points representing the values of
absorbance drawn on the paper.
3. From the absorbance value of the Unknown Protein drop a perpendicular on
the X axis and find the protein concentration for the unknown.
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); ajkhandagle@gmail.com Mob.-+91 9370333535
9
10. How to plot the graph…
• Determine the protein concentration using Microsoft Excel
• Enter the BSA standard concentration and absorbance value in 2 columns .
• select the data in the two columns
• From the menu bar, choose Insert then Chart.
• For Chart type sele t: XY S atter
• GO to Chart elements to select Axis titles, data labels, legend and Trendline
• Click Trendline to select equation and R-squared on chart
• Using the equation get the concentration of the sample
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); ajkhandagle@gmail.com Mob.-+91 9370333535
10
11. PROTEIN ESTIMATION BY LOWRY METHOD
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); Mob.-+91 9370333535ajkhandagle@gmail.com 11
Calculations:
A)A of sample/ A of Standard X Conc of Standard = ------------- µg/ml
A)Calculate by Graph using the standard curve = ------------- µg/ml
Result: The concentration of protein in the given unknown sample is
_____________ mg/ml.
12. References:
PDEA’s Prof.Ramkrishna More College, Akurdi, Pune (Affiliated to SPPU-PUNE); Mob.-+91 9370333535
ajkhandagle@gmail.com
12
Lowry, OH; Rosebrough, NJ; Farr, AL; Randall, RJ (1951). "Protein measurement with the
Folin phenol reagent". Journal of Biological Chemistry. 193 (1): 265–75.