There are many facets involved in the development of biogeochemical markers that might enable the geographic origins of fruit flies to be distinguished.
The aim of this project is to develop multispecies trapping strategies for the stored grain beetles Rhyzopertha dominica, Cryptolestes ferrugineus, Tribolium castaneum, Sitophilus oryzae (all established in Australia) and Prostephanus truncatus (not present in Australia) in outdoor environments.
With the loss of chemical control options such as Fenthion and Dimethoate for postharvest treatment of horticulture commodities susceptible to fruit fly infestation, it has become even more important to understand how stress-based control techniques such as heat, cold, irradiation and bacteria parasite
can be used most effectively for disinfestation. This project aims to explore the stress-induced molecular response of two fruit fly species of horticultural significance, Mediterranean fruit fly (Ceratitis capitata) and Queensland fruit fly (Bactrocera tryoni), by characterising the cellular pathways involved in both overall and stressor-specific responses.
Here we update on fundamental systematics research and the development of new potential molecular markers to improve on current diagnostic tools. We also link these molecular tools with physical specimens, documenting the range of morphological variation so as to greatly improve on available resources used to diagnose fruit flies in the field as part of surveillance programmes or at border interceptions.
Myrtle rust (Puccinia psidii) is an invasive fungus native to South America that was first detected in Australia in 2010. It has spread rapidly along the east coast, and is currently recorded in sites as far north as the Northern Territory and south to Tasmania.
In order to better understand myrtle rust extent and impacts in Australian native and managed landscapes, a survey was sent to national parks, botanical gardens, councils, natural resource
managers, nurseries and forestry agencies in all states where the fungus is present (NT, QLD, NSW, VIC and TAS). The survey revealed that Myrtle rust is widespread in NSW and QLD gardens and streets as well as in native vegetation.
An optimal surveillance system is one where the available sampling resources are allocated in time and space to best achieve detection objectives. This project aims to develop new methods for designing optimal surveillance systems that properly account for organism biology, trapping or sampling efficacy, and landscape characteristics.
The aim of this project is to develop multispecies trapping strategies for the stored grain beetles Rhyzopertha dominica, Cryptolestes ferrugineus, Tribolium castaneum, Sitophilus oryzae (all established in Australia) and Prostephanus truncatus (not present in Australia) in outdoor environments.
With the loss of chemical control options such as Fenthion and Dimethoate for postharvest treatment of horticulture commodities susceptible to fruit fly infestation, it has become even more important to understand how stress-based control techniques such as heat, cold, irradiation and bacteria parasite
can be used most effectively for disinfestation. This project aims to explore the stress-induced molecular response of two fruit fly species of horticultural significance, Mediterranean fruit fly (Ceratitis capitata) and Queensland fruit fly (Bactrocera tryoni), by characterising the cellular pathways involved in both overall and stressor-specific responses.
Here we update on fundamental systematics research and the development of new potential molecular markers to improve on current diagnostic tools. We also link these molecular tools with physical specimens, documenting the range of morphological variation so as to greatly improve on available resources used to diagnose fruit flies in the field as part of surveillance programmes or at border interceptions.
Myrtle rust (Puccinia psidii) is an invasive fungus native to South America that was first detected in Australia in 2010. It has spread rapidly along the east coast, and is currently recorded in sites as far north as the Northern Territory and south to Tasmania.
In order to better understand myrtle rust extent and impacts in Australian native and managed landscapes, a survey was sent to national parks, botanical gardens, councils, natural resource
managers, nurseries and forestry agencies in all states where the fungus is present (NT, QLD, NSW, VIC and TAS). The survey revealed that Myrtle rust is widespread in NSW and QLD gardens and streets as well as in native vegetation.
An optimal surveillance system is one where the available sampling resources are allocated in time and space to best achieve detection objectives. This project aims to develop new methods for designing optimal surveillance systems that properly account for organism biology, trapping or sampling efficacy, and landscape characteristics.
The risk myrtle rust poses to threatened Myrtaceae species in Australia is becoming more apparent with significant dieback and tree death recorded as a result of repeated infection.
Research presented in this session addresses the need to better understand the impacts of pests and diseases on the environment and the various ways that social science and the rules of community engagement can be applied for better biosecurity.
Up until mid-2016, citizen science uploads to the Atlas of Living Australia (ALA) included c. 400 bug species, and c. 1,000 beetle species. Given the short time period (c. 3 years) over which most of these records have accumulated, this represents a considerable reporting effort. The key question from a plant biosecurity context is how this level of reporting translates to the detection and reporting of
exotic insect pests in the event of an incursion.
This document discusses developing a common set of metrics for assessing the impact of plant pests. It presents 20 proposed metrics across categories like disruptor metrics, market-driven impacts, primary response, and mid-to-long term management. Examples are provided to illustrate how pests would be scored on the metrics and classified. The goal is to have a standardized, transparent, and easy to use impact assessment tool that can be validated and improved over time with input from end users.
The Australia-Africa Plant Biosecurity Partnership has brought together plant biosecurity professionals in ten African countries and established linkages with Australian researchers, helping
to reduce pest and disease impacts in sub-Saharan Africa. At the outset of this initiative, diagnostic skills were identified as a priority area in connecting Australian expertise with Africa and improving surveillance capability, post-entry quarantine, early warning and phytosanitary certification. This presentation will briefly examine the application of improved diagnostic skills in African Plant Protection Organisations and the longer term relationships that have been established with Australian mentors.
The document discusses the development and deployment of genome-informed diagnostic protocols for plant pathogenic bacteria by the Plant Biosecurity Cooperative Research Centre (PBCRC). The PBCRC has developed and validated laboratory and field diagnostic protocols to discriminate bacteria at the pathovar level using genome sequencing and bioinformatics. It has also trained scientists in plant bacteriology and engaged end-users in field testing and validation of new diagnostic technologies and protocols.
This document summarizes a presentation on using next generation sequencing (NGS) to improve virus and viroid detection for plants in post-entry quarantine (PEQ). Current PEQ diagnostic methods are slow and can miss pathogens. The presentation describes how NGS allows rapid and reliable detection of viruses without prior knowledge. A project found viruses in 68% of plant samples tested using NGS compared to traditional methods. NGS could reduce PEQ time from over 2 years to 6-12 months. Industry representatives expressed support but want more validation before fully adopting NGS for high-stakes pathogen testing and certification schemes. The project aims to provide more evidence and training to facilitate adoption of NGS for improving plant biosecurity.
This project has developed new ‘Smart’ Spore and Insect Trapping systems for target(s) surveillance referenced to GPS and climate data (temp, wind direction, RH), or wireless data transmission for improved compatibility to rapid and accurate downstream diagnostics.
Invasive pests and pathogens can have devastating and unpredicted impacts on native ecosystems. The threat that Puccinia psidii (myrtle/eucalyptus/guava rust) posed to Australian industries was well recognised, but until its introduction in 2010, there was scant consideration of the impacts this disease may have on endemic Myrtaceous plant species and associated communities in native environments. Since its detection in Australia, the distribution and host range of P. psidii has rapidly expanded and entire species and plant communities are now under threat.
The research being undertaken into myrtle rust has enabled improved species selection for production and retail nurseries, and for urban tree planting.
This document summarizes research on the ecology of the tomato potato psyllid (TPP) and its bacterial pathogen Candidatus Liberibacter solanacearum (CLso) which causes significant economic losses to horticulture crops in New Zealand. The research found that non-crop plants from the Solanaceae family can host all life stages of TPP and CLso throughout the year, posing challenges for surveillance and management. Studies on the feeding behaviors and development of TPP on different host plants found that the bacterial infection status and host plant species can impact these behaviors. The research aims to provide knowledge and tools to benefit growers, biosecurity agencies, and researchers seeking to manage TPP and CLso.
Long distance natural (wind-assisted) dispersal of exotic plant pests and pathogens into Australia, is a very real and underestimated, biosecurity risk.
Based on historical data, Australia and New Zealand (NZ) form a single epidemiological unit for cereal rusts. Until 2001, pathotype analysis of cereal rust pathogens for NZ was conducted at the University of Sydney, Plant Breeding Institute. The first year of pathotype analysis in New Zealand provided evidence for pathotype exchange in both directions across the Tasman. The second year of pathotype analysis has provided more detail on the evolution of rust pathotypes within New
Zealand. From these results a fuller picture of the pathotype diversity of New Zealand cereal rusts is emerging with important consequences for the cereal industry in both New Zealand and Australia.
The scale of the Australia’s grains industry means that monitoring for incursions of pests is a costly and challenging activity. This project utilises advanced technologies for surveillance of grains pests in the field, including smart spore and insect traps, and use of image sensors.
The disruption to trade caused by quarantine pests and diseases is a significant issue for Australian and New Zealand horticulture. There is an urgent need to review and improve the current disinfestation methods to develop new export protocols that are effective, economic and safe to use.
The project team consisting of researchers from across Australia and New Zealand, has reviewed all the published and unpublished phytosanitary research conducted against these pests.
Planning and decision making to manage plant biosecurity risks is inherently complex, often contentious, involves unknowns and uncertainty, and needs to be adaptable to rapidly changing situations. The aim of this project is to develop a collaborative planning and shared decision making
framework that will result in better and faster decisions to respond more quickly to plant biosecurity risks, resulting in reduced impacts and costs, and more equitable and favourable outcomes for stakeholders and affected parties.
This document discusses improving biosecurity for Australia's winter cereal industry. It summarizes that current post-entry quarantine regulations are inadequate and represent an unacceptable biosecurity risk. It has identified high priority exotic viruses as quarantinable risks based on national threat assessments. Diagnostic tests have been developed for 14 priority viruses that could be introduced through imported seed or other pathways. Recommendations include implementing improved post-entry quarantine protocols for cereals and adopting standard operating procedures for virus screening at the border.
Bacterial leaf spot (BLS) is a disease of tomato, chilli and capsicum caused by four species of Xanthomonas. BLS can cause severe crop damage and is a limiting factor of production across the world.
Research presented in this session will explore some of our innovative research to improve pest management and help maintain and build market access for our grains industries.
Three years of research to date have produced a robust, accurate, sensitive detection tool and sampling strategy for the damaging apid-like insect phylloxera (Daktulosphaira vitifoliae), which feeds on grapevine roots
Este documento proporciona un resumen de 5 pasos para enseñarle a Susana cómo enviar imágenes a sus contactos de WhatsApp de manera segura, incluyendo ingresar a la aplicación, seleccionar el contacto, indicar dónde está el botón de envío de archivos, seleccionar solo la opción de "galería", y seleccionar las imágenes para enviar.
María Cristina Salinas tuvo una historia inspiradora. Creció durante la época de la guerra en Colombia y experimentó dificultades económicas. A pesar de esto, se esforzó por salir adelante y brindar una mejor vida para su familia.
The risk myrtle rust poses to threatened Myrtaceae species in Australia is becoming more apparent with significant dieback and tree death recorded as a result of repeated infection.
Research presented in this session addresses the need to better understand the impacts of pests and diseases on the environment and the various ways that social science and the rules of community engagement can be applied for better biosecurity.
Up until mid-2016, citizen science uploads to the Atlas of Living Australia (ALA) included c. 400 bug species, and c. 1,000 beetle species. Given the short time period (c. 3 years) over which most of these records have accumulated, this represents a considerable reporting effort. The key question from a plant biosecurity context is how this level of reporting translates to the detection and reporting of
exotic insect pests in the event of an incursion.
This document discusses developing a common set of metrics for assessing the impact of plant pests. It presents 20 proposed metrics across categories like disruptor metrics, market-driven impacts, primary response, and mid-to-long term management. Examples are provided to illustrate how pests would be scored on the metrics and classified. The goal is to have a standardized, transparent, and easy to use impact assessment tool that can be validated and improved over time with input from end users.
The Australia-Africa Plant Biosecurity Partnership has brought together plant biosecurity professionals in ten African countries and established linkages with Australian researchers, helping
to reduce pest and disease impacts in sub-Saharan Africa. At the outset of this initiative, diagnostic skills were identified as a priority area in connecting Australian expertise with Africa and improving surveillance capability, post-entry quarantine, early warning and phytosanitary certification. This presentation will briefly examine the application of improved diagnostic skills in African Plant Protection Organisations and the longer term relationships that have been established with Australian mentors.
The document discusses the development and deployment of genome-informed diagnostic protocols for plant pathogenic bacteria by the Plant Biosecurity Cooperative Research Centre (PBCRC). The PBCRC has developed and validated laboratory and field diagnostic protocols to discriminate bacteria at the pathovar level using genome sequencing and bioinformatics. It has also trained scientists in plant bacteriology and engaged end-users in field testing and validation of new diagnostic technologies and protocols.
This document summarizes a presentation on using next generation sequencing (NGS) to improve virus and viroid detection for plants in post-entry quarantine (PEQ). Current PEQ diagnostic methods are slow and can miss pathogens. The presentation describes how NGS allows rapid and reliable detection of viruses without prior knowledge. A project found viruses in 68% of plant samples tested using NGS compared to traditional methods. NGS could reduce PEQ time from over 2 years to 6-12 months. Industry representatives expressed support but want more validation before fully adopting NGS for high-stakes pathogen testing and certification schemes. The project aims to provide more evidence and training to facilitate adoption of NGS for improving plant biosecurity.
This project has developed new ‘Smart’ Spore and Insect Trapping systems for target(s) surveillance referenced to GPS and climate data (temp, wind direction, RH), or wireless data transmission for improved compatibility to rapid and accurate downstream diagnostics.
Invasive pests and pathogens can have devastating and unpredicted impacts on native ecosystems. The threat that Puccinia psidii (myrtle/eucalyptus/guava rust) posed to Australian industries was well recognised, but until its introduction in 2010, there was scant consideration of the impacts this disease may have on endemic Myrtaceous plant species and associated communities in native environments. Since its detection in Australia, the distribution and host range of P. psidii has rapidly expanded and entire species and plant communities are now under threat.
The research being undertaken into myrtle rust has enabled improved species selection for production and retail nurseries, and for urban tree planting.
This document summarizes research on the ecology of the tomato potato psyllid (TPP) and its bacterial pathogen Candidatus Liberibacter solanacearum (CLso) which causes significant economic losses to horticulture crops in New Zealand. The research found that non-crop plants from the Solanaceae family can host all life stages of TPP and CLso throughout the year, posing challenges for surveillance and management. Studies on the feeding behaviors and development of TPP on different host plants found that the bacterial infection status and host plant species can impact these behaviors. The research aims to provide knowledge and tools to benefit growers, biosecurity agencies, and researchers seeking to manage TPP and CLso.
Long distance natural (wind-assisted) dispersal of exotic plant pests and pathogens into Australia, is a very real and underestimated, biosecurity risk.
Based on historical data, Australia and New Zealand (NZ) form a single epidemiological unit for cereal rusts. Until 2001, pathotype analysis of cereal rust pathogens for NZ was conducted at the University of Sydney, Plant Breeding Institute. The first year of pathotype analysis in New Zealand provided evidence for pathotype exchange in both directions across the Tasman. The second year of pathotype analysis has provided more detail on the evolution of rust pathotypes within New
Zealand. From these results a fuller picture of the pathotype diversity of New Zealand cereal rusts is emerging with important consequences for the cereal industry in both New Zealand and Australia.
The scale of the Australia’s grains industry means that monitoring for incursions of pests is a costly and challenging activity. This project utilises advanced technologies for surveillance of grains pests in the field, including smart spore and insect traps, and use of image sensors.
The disruption to trade caused by quarantine pests and diseases is a significant issue for Australian and New Zealand horticulture. There is an urgent need to review and improve the current disinfestation methods to develop new export protocols that are effective, economic and safe to use.
The project team consisting of researchers from across Australia and New Zealand, has reviewed all the published and unpublished phytosanitary research conducted against these pests.
Planning and decision making to manage plant biosecurity risks is inherently complex, often contentious, involves unknowns and uncertainty, and needs to be adaptable to rapidly changing situations. The aim of this project is to develop a collaborative planning and shared decision making
framework that will result in better and faster decisions to respond more quickly to plant biosecurity risks, resulting in reduced impacts and costs, and more equitable and favourable outcomes for stakeholders and affected parties.
This document discusses improving biosecurity for Australia's winter cereal industry. It summarizes that current post-entry quarantine regulations are inadequate and represent an unacceptable biosecurity risk. It has identified high priority exotic viruses as quarantinable risks based on national threat assessments. Diagnostic tests have been developed for 14 priority viruses that could be introduced through imported seed or other pathways. Recommendations include implementing improved post-entry quarantine protocols for cereals and adopting standard operating procedures for virus screening at the border.
Bacterial leaf spot (BLS) is a disease of tomato, chilli and capsicum caused by four species of Xanthomonas. BLS can cause severe crop damage and is a limiting factor of production across the world.
Research presented in this session will explore some of our innovative research to improve pest management and help maintain and build market access for our grains industries.
Three years of research to date have produced a robust, accurate, sensitive detection tool and sampling strategy for the damaging apid-like insect phylloxera (Daktulosphaira vitifoliae), which feeds on grapevine roots
Este documento proporciona un resumen de 5 pasos para enseñarle a Susana cómo enviar imágenes a sus contactos de WhatsApp de manera segura, incluyendo ingresar a la aplicación, seleccionar el contacto, indicar dónde está el botón de envío de archivos, seleccionar solo la opción de "galería", y seleccionar las imágenes para enviar.
María Cristina Salinas tuvo una historia inspiradora. Creció durante la época de la guerra en Colombia y experimentó dificultades económicas. A pesar de esto, se esforzó por salir adelante y brindar una mejor vida para su familia.
La señora Nohemí, de 55 años, es una costurera independiente de Valledupar que desea aprender más sobre costura y usar Facebook para comunicarse con su familia. El proyecto explicó a Nohemí cómo usar una computadora y navegar en sitios web como Redvolución y páginas de costura y Facebook. Aprendió a buscar información de interés y aplicar lo aprendido para comunicarse con su familia a través de las redes sociales. Nohemí ahora puede explorar sus pasiones de forma independiente gracias a las habilidades digitales ad
El documento describe una lección en la que Viviana enseña a Idalvis a leer las noticias del periódico El Tiempo en internet. Primero, Viviana le muestra a Idalvis el proyecto Redvolución y cómo puede usar este medio. Luego, ingresan a la página de El Tiempo para ver las noticias del día y la portada. Idalvis selecciona una noticia que le llama la atención. Ahora Idalvis puede buscar fácilmente las noticias de El Tiempo en internet cuando quiera.
Marta es una ama de casa que desea aprender a usar el correo electrónico para comunicarse con su familia en todo el país. La autora le enseña a Marta sobre los peligros de Internet, cómo crear una cuenta en Outlook.com, cómo registrarse en la página, cómo redactar y enviar correos electrónicos, y dónde puede ver los que recibe. Al final, Marta puede seguir el proceso sin ayuda y comunicarse con su familia sin importar dónde se encuentren.
Este documento describe cómo se ayudó a una estudiante universitaria de 22 años llamada Lina Maria Fernandez a crear una cuenta de Gmail. Se le mostró primero un sitio web del gobierno para generar interés en las tecnologías de la información y la comunicación. Luego se le guió a través del proceso de registro en Gmail, incluida la creación de un nombre de usuario y contraseña. Finalmente, se le presentó otro sitio web relacionado con las TIC y la persona quedó agradecida por el apoyo recibido.
Este documento describe el proceso de inspiración de Guido Martens para aprender un nuevo idioma en línea. Se muestran los 6 momentos clave del proceso: 1) Guido expresa su interés en aprender un idioma y no sabe cómo empezar, 2) se le muestra cómo acceder a una página para aprender en línea, 3) comienza la práctica constante del idioma, 4) se le presenta la plataforma REDVOLUCIÓN, 5) navega por la plataforma EN TIC CONFIO para aprender sobre seguridad
The Agali Research Centre located in Palakkad District, Kerala maintains 176 reference varieties of sugarcane. It was established in 1994 and became operational in 1999. The centre conducts DUS testing of sugarcane varieties and hosted training on plant variety rights and a visit by a former chairman of India's Protection of Plant Varieties and Farmers' Rights Authority.
El documento describe un proyecto de extensión agrícola con un ganadero local. El objetivo del proyecto es ampliar los conocimientos del ganadero sobre sanidad y parasitología animal para mantener sanos a sus animales. Las actividades incluyen un diagnóstico de la parcela, charlas sobre enfermedades comunes, aplicación de desparasitantes y garrapaticidas, y la entrega de un plan de desparasitación y documento final.
This document discusses lipids and lipidomics. It provides an introduction to lipids and describes how they are categorized. Lipidomics is defined as the system-level study of lipids. Examples of lipid categories and the numbers of lipids in each are given. Cardiovascular diseases associated with dysregulated cholesterol levels are summarized. Approaches to treating cardiovascular diseases include inhibiting HMG-CoA reductase with statins, blocking cholesterol absorption, increasing HDL expression, and targeting PCSK9. Lipid storage diseases like Gaucher's disease occur due to lipid accumulation and are treated using enzyme replacement therapy, substrate reduction therapy, or selective glucosylceramide synthase inhibitors. Post-translational lipid modifications like isopren
This document provides information on various pharmacognostic drugs. It begins by outlining 52 objectives to be covered, which include bitter glycosides, marine toxins, phyotoxins, hormones/steroids, incense materials, and many other drug classes. It then delves into details on each objective, providing the botanical source, chemical constituents, uses, and microscopic and chemical characteristics of many important drugs. Key drugs discussed include clove, cardamom, licorice, picrorhiza, andrographis, and their volatile oils. Extensive chemical tests are also outlined for different drug classes.
All of material inside is un-licence, kindly use it for educational only but please do not to commercialize it.
Based on 'ilman nafi'an, hopefully this file beneficially for you.
Thank you.
Applications Of DNA Barcoding To Fish Landings Authentication And Diversity ...Heather Strinden
This document discusses using DNA barcoding to analyze fish catches for species identification and assessing genetic diversity. It explores using mitochondrial DNA sequences (12S rDNA, COI, cyt b, D-Loop) as barcodes on two marine and two freshwater catches of varying diversity. Analysis found ambiguous identification from COI and cyt b in some cases due to duplicated database names or mitochondrial introgression between close species. The document suggests analyzing one conserved and one more variable gene to identify species and assess diversity to inform fisheries management in a practical and cost-effective way.
Rapid Impact Assessment of Climatic and Physio-graphic Changes on Flagship G...Arvinder Singh
‘NATIONAL CONFERENCE ON MAN AND ENVIRONMENT’October 15 – 16, 2012
Organized by
Department of Zoology and Environmental Sciences, Punjabi University, Patiala (Pb.) – 147 002, India
Conservation Biotechnology: DNA and Tissue Bank, DNA Barcoding, DNA fingerpr...AnitaPoudel5
This document discusses various biotechnological techniques used for conservation, including DNA and tissue banking, DNA barcoding, and DNA fingerprinting. It provides an overview of each technique, explaining what they are, how they work, and their applications. DNA and tissue banking preserves genetic material for research and conservation. DNA barcoding uses short DNA sequences to identify species, while DNA fingerprinting examines differences in DNA to identify individuals. These techniques help preserve biodiversity, study species and populations, and aid fields like forensics, agriculture and medicine.
This document reviews research papers on the application of environmental DNA (eDNA) in biomonitoring and assessment of aquatic ecosystems. eDNA refers to genetic material from living organisms present in environmental samples like water and sediment. DNA metabarcoding allows identification of many species simultaneously in a sample by sequencing short, standardized DNA regions. Potential applications of eDNA include detection of single species, surveys of biodiversity and community composition, and bioassessment using biotic indices. Monitoring programs currently rely on time-consuming organism identification but eDNA-based approaches could enable higher temporal and spatial resolution.
This document discusses challenges and opportunities for discovering and documenting biodiversity in the current information age. It argues that current taxonomic processes are too slow and that new approaches are needed to integrate distributed data sources and leverage community contributions. Specifically, it proposes:
1) Publishing new biodiversity data prior to formal documentation to accelerate discovery.
2) Developing automated workflows and online workspaces to integrate phylogenetic, distribution, and trait data.
3) Enabling community participation through open data sharing and collaborative annotation platforms.
This document discusses challenges and opportunities for discovering and documenting biodiversity in the current information age. It argues that current taxonomic processes are too slow and that new approaches are needed to integrate distributed data sources and leverage community sourcing. Specifically, it advocates for:
1) Publishing new biodiversity data prior to formal documentation to accelerate discovery.
2) Developing automated workflows and online workspaces to integrate phylogenetic, distribution, and trait data.
3) Enabling community participation in annotating and improving global biodiversity models and maps.
4) Changing incentives to value data sharing over individual "kudos" and prioritize the collective good of the scientific community.
Global patterns of insect diiversity, distribution and evolutionary distinctnessAlison Specht
The presentation of the CESAB group ACTIAS at the 2016 french ecology conference in the FRB-CESAB session "Using a treasury of knowledge to tackle complex ecological questions." Presenter: Carlos Lopez-Vaamonde
Genebanks as GBIF data providers, the first experiences, at the TDWG 2004 con...Dag Endresen
Genebanks as GBIF data providers - the first experiences. Helmut Knüpffer and Norbert Biermann (IPK Gatersleben), Dag Endresen (Nordic Gene Bank), Pawel Kolasinski and Wieslaw Podyma (IHAR), Javier de la Torre (BGBM, ENBI). Presented at TDWG 2004 conference in Christchurch, New Zealand, 13 October 2004.
This document discusses the analysis of microbial communities through sequencing of the 16S rRNA gene. It presents WATERS, a workflow system that automates and bundles various software tools for analyzing 16S rRNA sequence data. The goals of WATERS are to simplify the analysis process for users without specialized bioinformatics expertise and to facilitate reproducibility through tracking of data provenance. WATERS guides users through the typical sequence analysis steps of alignment, chimera filtering, OTU clustering, taxonomy assignment, phylogeny tree building, and ecological analyses and visualization. By integrating existing tools into a single automated workflow, WATERS aims to reduce the effort required for 16S rRNA data analysis and allow researchers to focus on biological interpretation of results.
Trait Mining, prediction of agricultural traits in plant genetic resources with ecological parameters. Focused Identification of Germplasm Strategy (FIGS). For the Vavilov seminars at the IPK Gatersleben 13th June 2007. Dag Endresen, Michael Mackay, Kenneth Street.
This document summarizes an update on DNA barcoding of human pathogenic fungi. It discusses that the ITS region has been proposed as the prime fungal barcode, but that other genetic loci like RPB1 may provide better resolution. It notes challenges with existing databases and the need for quality controlled reference databases. It outlines efforts to establish an international working group and reference database to standardize DNA barcoding for accurate identification of medically important fungi.
Research Program Genetic Gains (RPGG) Review Meeting 2021: From Discovery to ...ICRISAT
Chickpea (Cicer arietinum) is the second most widely grown legume crop after soybean, accounting for a substantial proportion of human dietary nitrogen intake and playing a crucial role in food security in developing countries. We report the∼ 738-Mb draft whole genome shotgun sequence of CDC Frontier, a kabuli chickpea variety, which contains an estimated 28,269 genes. Resequencing and analysis of 90 cultivated and wild genotypes from ten countries identifies targets of both breeding-associated genetic sweeps and breeding-associated balancing selection. Candidate genes for disease resistance and agronomic traits are highlighted, including traits that distinguish the two main market classes of cultivated chickpea—desi and kabuli.
Biomass and secondary production of juvenile stages of Acartia (Copepoda: Cal...Sérgio Leandro
This study examined the biomass and secondary production rates of juvenile copepod populations in an estuary in Portugal. Researchers measured the somatic growth rates of nauplii and copepodites of two Acarita species to calculate their secondary production. They developed species-specific and site-specific temperature-dependent growth models based on previous studies of these populations. The results provide insights into the role of these copepods in carbon flux and food webs in the estuarine ecosystem.
POMS the latest R&D Results - Kube et alprogressive01
The document summarizes recent research on Pacific Oyster Mortality Syndrome (POMS). It discusses:
1) Outbreaks of POMS in various locations since 2007 caused by Ostreid herpesvirus. Mass mortalities can occur within a week.
2) The R&D response is focusing on genetic selection for resistance, developing a laboratory infection model, and evaluating husbandry practices.
3) Three key points about breeding for resistance: there is genetic variation, better field data yields better genetic progress, and selective breeding provides a solution but will take time to see full effects.
Pre-empting the emergence of zoonoses by understanding their socio-ecologyNaomi Marks
Keynote presentation by Dr Peter Daqszak, President, EcoHealth Alliance, at the One Health for the Real World: zoonoses, ecosystems and wellbeing symposium, London 17-18 March 2016
Keynote Speaker 1 - Data Intensive Challenges in Biodiversity Conservation: a...TERN Australia
1) The document discusses using massive volumes of biodiversity data from sources like eBird to build species distribution models through data-driven techniques.
2) eBird gathers bird observation data from citizen scientists and uses this crowdsourced data along with review processes to build databases on species distributions.
3) Models like SpatioTemporal Exploratory Models (STEM) are used to predict species distributions across multiple scales by differentiating between local and global patterns and accounting for non-stationarity in species-habitat associations over space and time.
Study of virulence genes in vancomycin resistant Enterococci (vre) from anima...Innspub Net
With Enterococcus species in the leading cause of nosocomial infections and resistance to an array of antibiotics, this study focused to determine the frequency and distribution of vancomycin-resistant Enterococci, the presence of virulence genes and to determine the relative nucleotide sequence relatedness among isolates using 16S rRNA sequence. A random sampling of 120 fecal samples of cattle, poultry, and piggery, and human clinical isolates was analyzed. Standard bacteriological methods were employed in the isolation and characterization of isolates and the disk diffusion method was used in determining their antibiotic resistance profiles. Results showed Enterococcus species in cattle at 100%, followed by clinical isolates at 80%. Vancomycin resistance was observed at high rates in Enterococcus species from human clinical isolates and cattle isolates at 90% and 80% respectively. Multiple antibiotic-resistant isolates yielded twelve resistance profiles and 16S rDNA sequences identified E. faecalis, E. durans, E. mundtii, and Enterococcus sp. Isolates from cattle samples were the most probable source of clinical isolates at 78% homology of conserved regions with the clinical isolates. Virulence determinant genes Asa1 was recorded at66.6%, Cyl at 16.6% and GelE at 8.3% among the isolates. This study established farm animals as possible reservoirs of VRE isolates to man. Hence, healthy and professional practices among animal farmers with antibiotic usage, as well as hygienic and preventive measures among hospital workers are here recommended.
Similar to Session 5: Exploiting hydrogen and oxygen as components of a natal origin biogeochemical marker is challenging but promising (20)
This document summarizes a project that aims to develop diagnostic tools for detecting exotic plant pathogens using a genome-informed approach. The project generates knowledge of plant pathogenic bacteria and strategies for diagnostic development. Key outputs include scientific publications, diagnostic protocols validated in Australia, and tools to facilitate early detection and response. The diagnostics produced will help secure border protection and support trade by enabling accurate identification of pathogens.
The aim of this research project is to establish Australian developed seed testing protocols as an international standard for the detection of viroids and cucumber green mottle mosaic virus (CGMMV) in seed, and to reduce the risks of contaminated traded seed.
The diagnosis of viral pathogens is a crucial component of plant biosecurity surveillance and preventing the introduction of exotic plant viruses and viroids at the border. Existing quarantine procedures can be time-consuming and require detailed knowledge of potential infecting viral pathogens. Currently, imported plants can spend as long as two years in quarantine, with associated costs.
To simplify the post-entry quarantine process researchers have developed a plant diagnostic toolkit for plant viruses and viroids. The toolkit takes advantage of the natural antiviral system of plants, using small RNA next generation sequencing (sRNA-seq) technology to detect nearly all known viruses and viroids in a single test. The new test, and associated toolkit, will reduce the time imported plant material spends in Australia’s quarantine system while improving accuracy of detection in a single sRNA-seq experiment.
This research has developed recommendations for stakeholders involved in area-wide management of fruit fly, including social and institutional requirements.
This document summarizes a research project aiming to develop culturally appropriate models for engaging indigenous communities in biosecurity issues. The project is a collaboration between researchers in Australia and New Zealand. It establishes an Indigenous Reference Group and Industry Advisory Network to help guide the development of engagement models. The models will be tested and refined with the goal of enhancing indigenous communities' ability to manage biosecurity threats in culturally sensitive ways. One engagement model presented is based on traditional Aboriginal practices for detoxifying cycad nuts, using the process as a metaphor for relationship-building and knowledge-sharing. End users praise the research for centering indigenous perspectives to strengthen biosecurity protection of native plants.
This social biosecurity project, aims to improve plant biosecurity management by developing the capacity of regional and remote communities to engage in biosecurity surveillance activities.
Surveillance systems are an essential component of biosecurity. Design of biosecurity surveillance systems may include designs of grids of static traps, plans for field sampling, or deployment of potentially "game-changing" mobile trap technology. The aim of these systems is to achieve defined detection objectives, (e.g. early detection, supporting area-freedom status) at minimum cost. This project will develop and apply statistically-based surveillance systems that account for organism biology, trap behaviour and landscape characteristics.
Ships arriving in Australia may have visited multiple ports along the way. These complex pathways present opportunities for pest species, such as the Asian Gypsy Moth, to arrive into Australia from indirect routes. Understanding those pathways that link Australia directly or indirectly to countries in which a pest or disease occurs is necessary to identify arriving ships with the highest likelihood of carrying hitchhiker species. This project proposes to address three important questions:
1. What general shipping pathways pose the greatest risk?
2. How to make decisions regarding what ships to search?
3. How much inspection to conduct?
This research project is collecting data on past pest invasions in both Australia and New Zealand, in order to identify common patterns in plant biosecurity pests.
This research will investigate technologies to enable the development of spore traps capable of in-field detection, and identification, of specific biosecurity threats.
This document discusses a project to develop new tools and technologies for field grain surveillance and diagnostics of high priority exotic pests. It involves developing smart insect and spore traps using sensors, GPS, and wireless transmission. The traps will detect and identify endemic and exotic pests and pathogens. Researchers are testing pheromone stacking, suction traps, and mobile jet spore samplers. Samples will undergo qPCR diagnostics to identify mixed populations. The goal is a coordinated surveillance network using smart sampling and lab-based identification to rapidly detect and report biosecurity threats.
Traps can now be constructed to automatically report captured insects using digital technologies. This project examines trap design and deployment strategies like trap placement, efficiency, and attractants. The study organism is the Hessian fly, a pest of wheat that causes significant yield loss. Results of the objectives will benefit US and Australian wheat producers by developing efficient monitoring methods and management strategies to minimize yield loss and export restrictions, helping biosecurity and research/extension agents.
The spread of invasive species continues to provide significant challenges to those government biosecurity agencies charged with protecting a country’s borders. In an increasingly connected world, these invasive species are potentially able to spread further and more rapidly. Human mediated pathways such as ships and airlines are the most obvious ways in which invasive species can be spread. Direct routes from one port to another are currently monitored, but indirect pathways,
in which a ship picks up an invasive species and then travels to a number of different locations before arriving at the final destination, present more challenging scenarios. For the Australian Government Department of Agriculture, one particular concern is for ships arriving into Australia carrying viable eggs of the Asian gypsy moth (Lymantria dispar). We are developing a real time tool that will analyse the pathways for incoming ships and determine the likelihood the ship could be carrying viable eggs.
Biosecurity issues impact on key crops and environmental values across NZ and Australia. A key outcome for the project team will be the ability of indigenous communities, and relevant regulatory authorities and industries, to better manage the social, environmental and economic impacts of biosecurity threats, and to participate in biosecurity strategies through improved bicultural engagement models that build empowerment and ownership in indigenous communities and their response to those threats. The teams have developed an engagement model adapted to the indigenous peoples and their communities of each country.
The results of a baseline study on motivation and incentives involved in the decisions to control fruit fly highlight the variability of motivations within demographic groups.
Chlorine dioxide was tested in three pilot scale structures including the mini silo, the column, and the flat box against five stored-product insect pests, including adults of Rhyzopertha dominica (F.), Tribolium castaneum (Herbst), Oryzaephilus surinamensis (L.), Sitophilus zeamais Motschulsky, and
Sitophilus oryzae (L.).
The Global Eradication and Response Database (GERDA) summarises incursion response and eradication programmes from around the world. The purpose of GERDA is to determine which characteristics lead to the success or failure of eradication programmes.
More from Plant Biosecurity Cooperative Research Centre (18)
PPT on Alternate Wetting and Drying presented at the three-day 'Training and Validation Workshop on Modules of Climate Smart Agriculture (CSA) Technologies in South Asia' workshop on April 22, 2024.
Mending Clothing to Support Sustainable Fashion_CIMaR 2024.pdfSelcen Ozturkcan
Ozturkcan, S., Berndt, A., & Angelakis, A. (2024). Mending clothing to support sustainable fashion. Presented at the 31st Annual Conference by the Consortium for International Marketing Research (CIMaR), 10-13 Jun 2024, University of Gävle, Sweden.
PPT on Direct Seeded Rice presented at the three-day 'Training and Validation Workshop on Modules of Climate Smart Agriculture (CSA) Technologies in South Asia' workshop on April 22, 2024.
The debris of the ‘last major merger’ is dynamically youngSérgio Sacani
The Milky Way’s (MW) inner stellar halo contains an [Fe/H]-rich component with highly eccentric orbits, often referred to as the
‘last major merger.’ Hypotheses for the origin of this component include Gaia-Sausage/Enceladus (GSE), where the progenitor
collided with the MW proto-disc 8–11 Gyr ago, and the Virgo Radial Merger (VRM), where the progenitor collided with the
MW disc within the last 3 Gyr. These two scenarios make different predictions about observable structure in local phase space,
because the morphology of debris depends on how long it has had to phase mix. The recently identified phase-space folds in Gaia
DR3 have positive caustic velocities, making them fundamentally different than the phase-mixed chevrons found in simulations
at late times. Roughly 20 per cent of the stars in the prograde local stellar halo are associated with the observed caustics. Based
on a simple phase-mixing model, the observed number of caustics are consistent with a merger that occurred 1–2 Gyr ago.
We also compare the observed phase-space distribution to FIRE-2 Latte simulations of GSE-like mergers, using a quantitative
measurement of phase mixing (2D causticality). The observed local phase-space distribution best matches the simulated data
1–2 Gyr after collision, and certainly not later than 3 Gyr. This is further evidence that the progenitor of the ‘last major merger’
did not collide with the MW proto-disc at early times, as is thought for the GSE, but instead collided with the MW disc within
the last few Gyr, consistent with the body of work surrounding the VRM.
Anti-Universe And Emergent Gravity and the Dark UniverseSérgio Sacani
Recent theoretical progress indicates that spacetime and gravity emerge together from the entanglement structure of an underlying microscopic theory. These ideas are best understood in Anti-de Sitter space, where they rely on the area law for entanglement entropy. The extension to de Sitter space requires taking into account the entropy and temperature associated with the cosmological horizon. Using insights from string theory, black hole physics and quantum information theory we argue that the positive dark energy leads to a thermal volume law contribution to the entropy that overtakes the area law precisely at the cosmological horizon. Due to the competition between area and volume law entanglement the microscopic de Sitter states do not thermalise at sub-Hubble scales: they exhibit memory effects in the form of an entropy displacement caused by matter. The emergent laws of gravity contain an additional ‘dark’ gravitational force describing the ‘elastic’ response due to the entropy displacement. We derive an estimate of the strength of this extra force in terms of the baryonic mass, Newton’s constant and the Hubble acceleration scale a0 = cH0, and provide evidence for the fact that this additional ‘dark gravity force’ explains the observed phenomena in galaxies and clusters currently attributed to dark matter.
Microbial interaction
Microorganisms interacts with each other and can be physically associated with another organisms in a variety of ways.
One organism can be located on the surface of another organism as an ectobiont or located within another organism as endobiont.
Microbial interaction may be positive such as mutualism, proto-cooperation, commensalism or may be negative such as parasitism, predation or competition
Types of microbial interaction
Positive interaction: mutualism, proto-cooperation, commensalism
Negative interaction: Ammensalism (antagonism), parasitism, predation, competition
I. Mutualism:
It is defined as the relationship in which each organism in interaction gets benefits from association. It is an obligatory relationship in which mutualist and host are metabolically dependent on each other.
Mutualistic relationship is very specific where one member of association cannot be replaced by another species.
Mutualism require close physical contact between interacting organisms.
Relationship of mutualism allows organisms to exist in habitat that could not occupied by either species alone.
Mutualistic relationship between organisms allows them to act as a single organism.
Examples of mutualism:
i. Lichens:
Lichens are excellent example of mutualism.
They are the association of specific fungi and certain genus of algae. In lichen, fungal partner is called mycobiont and algal partner is called
II. Syntrophism:
It is an association in which the growth of one organism either depends on or improved by the substrate provided by another organism.
In syntrophism both organism in association gets benefits.
Compound A
Utilized by population 1
Compound B
Utilized by population 2
Compound C
utilized by both Population 1+2
Products
In this theoretical example of syntrophism, population 1 is able to utilize and metabolize compound A, forming compound B but cannot metabolize beyond compound B without co-operation of population 2. Population 2is unable to utilize compound A but it can metabolize compound B forming compound C. Then both population 1 and 2 are able to carry out metabolic reaction which leads to formation of end product that neither population could produce alone.
Examples of syntrophism:
i. Methanogenic ecosystem in sludge digester
Methane produced by methanogenic bacteria depends upon interspecies hydrogen transfer by other fermentative bacteria.
Anaerobic fermentative bacteria generate CO2 and H2 utilizing carbohydrates which is then utilized by methanogenic bacteria (Methanobacter) to produce methane.
ii. Lactobacillus arobinosus and Enterococcus faecalis:
In the minimal media, Lactobacillus arobinosus and Enterococcus faecalis are able to grow together but not alone.
The synergistic relationship between E. faecalis and L. arobinosus occurs in which E. faecalis require folic acid
Authoring a personal GPT for your research and practice: How we created the Q...Leonel Morgado
Thematic analysis in qualitative research is a time-consuming and systematic task, typically done using teams. Team members must ground their activities on common understandings of the major concepts underlying the thematic analysis, and define criteria for its development. However, conceptual misunderstandings, equivocations, and lack of adherence to criteria are challenges to the quality and speed of this process. Given the distributed and uncertain nature of this process, we wondered if the tasks in thematic analysis could be supported by readily available artificial intelligence chatbots. Our early efforts point to potential benefits: not just saving time in the coding process but better adherence to criteria and grounding, by increasing triangulation between humans and artificial intelligence. This tutorial will provide a description and demonstration of the process we followed, as two academic researchers, to develop a custom ChatGPT to assist with qualitative coding in the thematic data analysis process of immersive learning accounts in a survey of the academic literature: QUAL-E Immersive Learning Thematic Analysis Helper. In the hands-on time, participants will try out QUAL-E and develop their ideas for their own qualitative coding ChatGPT. Participants that have the paid ChatGPT Plus subscription can create a draft of their assistants. The organizers will provide course materials and slide deck that participants will be able to utilize to continue development of their custom GPT. The paid subscription to ChatGPT Plus is not required to participate in this workshop, just for trying out personal GPTs during it.
JAMES WEBB STUDY THE MASSIVE BLACK HOLE SEEDSSérgio Sacani
The pathway(s) to seeding the massive black holes (MBHs) that exist at the heart of galaxies in the present and distant Universe remains an unsolved problem. Here we categorise, describe and quantitatively discuss the formation pathways of both light and heavy seeds. We emphasise that the most recent computational models suggest that rather than a bimodal-like mass spectrum between light and heavy seeds with light at one end and heavy at the other that instead a continuum exists. Light seeds being more ubiquitous and the heavier seeds becoming less and less abundant due the rarer environmental conditions required for their formation. We therefore examine the different mechanisms that give rise to different seed mass spectrums. We show how and why the mechanisms that produce the heaviest seeds are also among the rarest events in the Universe and are hence extremely unlikely to be the seeds for the vast majority of the MBH population. We quantify, within the limits of the current large uncertainties in the seeding processes, the expected number densities of the seed mass spectrum. We argue that light seeds must be at least 103 to 105 times more numerous than heavy seeds to explain the MBH population as a whole. Based on our current understanding of the seed population this makes heavy seeds (Mseed > 103 M⊙) a significantly more likely pathway given that heavy seeds have an abundance pattern than is close to and likely in excess of 10−4 compared to light seeds. Finally, we examine the current state-of-the-art in numerical calculations and recent observations and plot a path forward for near-future advances in both domains.
The binding of cosmological structures by massless topological defectsSérgio Sacani
Assuming spherical symmetry and weak field, it is shown that if one solves the Poisson equation or the Einstein field
equations sourced by a topological defect, i.e. a singularity of a very specific form, the result is a localized gravitational
field capable of driving flat rotation (i.e. Keplerian circular orbits at a constant speed for all radii) of test masses on a thin
spherical shell without any underlying mass. Moreover, a large-scale structure which exploits this solution by assembling
concentrically a number of such topological defects can establish a flat stellar or galactic rotation curve, and can also deflect
light in the same manner as an equipotential (isothermal) sphere. Thus, the need for dark matter or modified gravity theory is
mitigated, at least in part.
Discovery of An Apparent Red, High-Velocity Type Ia Supernova at 𝐳 = 2.9 wi...Sérgio Sacani
We present the JWST discovery of SN 2023adsy, a transient object located in a host galaxy JADES-GS
+
53.13485
−
27.82088
with a host spectroscopic redshift of
2.903
±
0.007
. The transient was identified in deep James Webb Space Telescope (JWST)/NIRCam imaging from the JWST Advanced Deep Extragalactic Survey (JADES) program. Photometric and spectroscopic followup with NIRCam and NIRSpec, respectively, confirm the redshift and yield UV-NIR light-curve, NIR color, and spectroscopic information all consistent with a Type Ia classification. Despite its classification as a likely SN Ia, SN 2023adsy is both fairly red (
�
(
�
−
�
)
∼
0.9
) despite a host galaxy with low-extinction and has a high Ca II velocity (
19
,
000
±
2
,
000
km/s) compared to the general population of SNe Ia. While these characteristics are consistent with some Ca-rich SNe Ia, particularly SN 2016hnk, SN 2023adsy is intrinsically brighter than the low-
�
Ca-rich population. Although such an object is too red for any low-
�
cosmological sample, we apply a fiducial standardization approach to SN 2023adsy and find that the SN 2023adsy luminosity distance measurement is in excellent agreement (
≲
1
�
) with
Λ
CDM. Therefore unlike low-
�
Ca-rich SNe Ia, SN 2023adsy is standardizable and gives no indication that SN Ia standardized luminosities change significantly with redshift. A larger sample of distant SNe Ia is required to determine if SN Ia population characteristics at high-
�
truly diverge from their low-
�
counterparts, and to confirm that standardized luminosities nevertheless remain constant with redshift.
Describing and Interpreting an Immersive Learning Case with the Immersion Cub...Leonel Morgado
Current descriptions of immersive learning cases are often difficult or impossible to compare. This is due to a myriad of different options on what details to include, which aspects are relevant, and on the descriptive approaches employed. Also, these aspects often combine very specific details with more general guidelines or indicate intents and rationales without clarifying their implementation. In this paper we provide a method to describe immersive learning cases that is structured to enable comparisons, yet flexible enough to allow researchers and practitioners to decide which aspects to include. This method leverages a taxonomy that classifies educational aspects at three levels (uses, practices, and strategies) and then utilizes two frameworks, the Immersive Learning Brain and the Immersion Cube, to enable a structured description and interpretation of immersive learning cases. The method is then demonstrated on a published immersive learning case on training for wind turbine maintenance using virtual reality. Applying the method results in a structured artifact, the Immersive Learning Case Sheet, that tags the case with its proximal uses, practices, and strategies, and refines the free text case description to ensure that matching details are included. This contribution is thus a case description method in support of future comparative research of immersive learning cases. We then discuss how the resulting description and interpretation can be leveraged to change immersion learning cases, by enriching them (considering low-effort changes or additions) or innovating (exploring more challenging avenues of transformation). The method holds significant promise to support better-grounded research in immersive learning.
CLASS 12th CHEMISTRY SOLID STATE ppt (Animated)eitps1506
Description:
Dive into the fascinating realm of solid-state physics with our meticulously crafted online PowerPoint presentation. This immersive educational resource offers a comprehensive exploration of the fundamental concepts, theories, and applications within the realm of solid-state physics.
From crystalline structures to semiconductor devices, this presentation delves into the intricate principles governing the behavior of solids, providing clear explanations and illustrative examples to enhance understanding. Whether you're a student delving into the subject for the first time or a seasoned researcher seeking to deepen your knowledge, our presentation offers valuable insights and in-depth analyses to cater to various levels of expertise.
Key topics covered include:
Crystal Structures: Unravel the mysteries of crystalline arrangements and their significance in determining material properties.
Band Theory: Explore the electronic band structure of solids and understand how it influences their conductive properties.
Semiconductor Physics: Delve into the behavior of semiconductors, including doping, carrier transport, and device applications.
Magnetic Properties: Investigate the magnetic behavior of solids, including ferromagnetism, antiferromagnetism, and ferrimagnetism.
Optical Properties: Examine the interaction of light with solids, including absorption, reflection, and transmission phenomena.
With visually engaging slides, informative content, and interactive elements, our online PowerPoint presentation serves as a valuable resource for students, educators, and enthusiasts alike, facilitating a deeper understanding of the captivating world of solid-state physics. Explore the intricacies of solid-state materials and unlock the secrets behind their remarkable properties with our comprehensive presentation.
EWOCS-I: The catalog of X-ray sources in Westerlund 1 from the Extended Weste...Sérgio Sacani
Context. With a mass exceeding several 104 M⊙ and a rich and dense population of massive stars, supermassive young star clusters
represent the most massive star-forming environment that is dominated by the feedback from massive stars and gravitational interactions
among stars.
Aims. In this paper we present the Extended Westerlund 1 and 2 Open Clusters Survey (EWOCS) project, which aims to investigate
the influence of the starburst environment on the formation of stars and planets, and on the evolution of both low and high mass stars.
The primary targets of this project are Westerlund 1 and 2, the closest supermassive star clusters to the Sun.
Methods. The project is based primarily on recent observations conducted with the Chandra and JWST observatories. Specifically,
the Chandra survey of Westerlund 1 consists of 36 new ACIS-I observations, nearly co-pointed, for a total exposure time of 1 Msec.
Additionally, we included 8 archival Chandra/ACIS-S observations. This paper presents the resulting catalog of X-ray sources within
and around Westerlund 1. Sources were detected by combining various existing methods, and photon extraction and source validation
were carried out using the ACIS-Extract software.
Results. The EWOCS X-ray catalog comprises 5963 validated sources out of the 9420 initially provided to ACIS-Extract, reaching a
photon flux threshold of approximately 2 × 10−8 photons cm−2
s
−1
. The X-ray sources exhibit a highly concentrated spatial distribution,
with 1075 sources located within the central 1 arcmin. We have successfully detected X-ray emissions from 126 out of the 166 known
massive stars of the cluster, and we have collected over 71 000 photons from the magnetar CXO J164710.20-455217.
EWOCS-I: The catalog of X-ray sources in Westerlund 1 from the Extended Weste...
Session 5: Exploiting hydrogen and oxygen as components of a natal origin biogeochemical marker is challenging but promising
1. biosecurity built on science
Exploiting Hydrogen and Oxygen as Components of a Natal Origin
Biogeochemical Marker is Challenging but Promising
(PBCRC2111)
Karen Armstrong & Peter Holder (BPRC)
David Murphy & Karine Harumi Moromizato (QUT)
Peter Crisp (SARDI)
Bill Woods (DAFWA)
Solomon Balagawi (NSW DPI)
with
Robert Van Hale & Dianne Clarke (Univ. Otago)
Plant Biosecurity Cooperative Research Centre
2. biosecurity built on science
Natal origins of fruit flies
Non-
established
Potentially
breeding
Confirmed
breeding
population
15 M
4 M
2 M
1 M
0 M
EstimatedcostsNZD
e.g. estimated cost QFF incursion, NZ (2015)
Is this fly from a locally established
population or has it just arrived?
Do we know where from?
3. biosecurity built on science
Stable isotope geographic markers: δ2H and δ18O
99.985% 0.0026–0.0184%
O8
8 O10
8
99.76% 0.20%
Light Heavy
4. biosecurity built on science
Challenges for biosecurity application
Technical:
‐ Can geographic areas be resolved at a relevant spatial scales?
‐ Generation of reference ‘isoscapes’
‐ Can existing technology be adapted for smaller insects?
‐ Can conclusions be drawn from only a few insects?
Biological:
‐ How faithful is the environment-to-plant-to-insect signature?
‐ Does polyphagy matter?
5. biosecurity built on science
How good is the spatial resolution within Australia?
xx xx
x
xxx
x
x
xx
xxx
x
xxxx
x
xx
x
x
x x
xxx
x
x
x
x
xxxx
x
xx
Kunanara
Broome
Carnarvon
x xx
x
x
7. biosecurity built on science
Gathering data to develop relevant isoscapes
August
December
Australia Asia
δ2H: www.waterisotopes.org
http://www.ansto.gov.au/AboutANSTO/M
ediaCentre/News/ACS101040 July 2016
8. biosecurity built on science
Now understand the fractionation relationship
-5
0
5
10
15
20
25
30
-70 -50 -30 -10 10 30 50 70 90
δ18O
δ2H
Q-Fly and medfly water to wing 2H and 18O Δ
Q-fly T1 medfly T1 Q-fly T2
medfly T2 Q-fly T3 medfly T3
Water T1 Water T2 Water T3
9. How many individuals needed for confident assignment?
Are these NZ H. armigera
from NZ?
Are these AUS H. armigera
from NZ
(Naïve Bayes analysis)
(Boosted regression tree
analysis)
10. Choosing the right tissue for analysis
Adult flies on treatments for 13 diff. periods, 0 – 90 days:
T1 starved (no water)
T2 control (same water)
T3 water enriched for d2H & d18O
5 samples per time period, various tissues used for H & O
analysis
Results pending….
Does adult feeding influence the natal signature via tissue turnover?
11. biosecurity built on science
Summary - H & O isotope ratio markers of origin
Challenges
• Developing relevant reference
isoscapes – local, regional,
international?
• Developing a multivariate systems
‘model’ for end user application
Promises
• Technology to analyse single insects
rapidly is possible
• Number of insects needed is low
• We understand the δ2H & δ18O
signature food-to-fly transmission
• Wild fly regional differences can be
greater than any seasonal or host
variation
12. biosecurity built on science
The End-User Advocate’s perspective
Various uses for knowledge of natal origins:
- declarations of area freedom
- indicator of regions generating infested produce
- understand local pathway risk – landscape use, preferred sites & travel corridors
Ultimate end users/beneficiaries:
- horticultural industries susceptible to fruit fly
- inter-state quarantine (regulators and risk managers)
- funding providers for regulatory activities, funding bodies for better targeted research
for international market access
Climate change
- Qfly range expanding so NZ, Tasmania and South Australia under increasing pressure
to maintain area freedom = intensified interest in evidence for source of a breach.
Bernie Dominiak, NSW DPI