Plastids like chloroplasts contain their own circular DNA and are capable of expressing foreign genes at high levels. This document describes research where the human serum albumin (HSA) gene was successfully transformed into the tobacco chloroplast genome. Up to 11.1% of total soluble protein consisted of HSA, over 500 times higher than when introduced into the nuclear genome. The chloroplast transformation resulted in HSA accumulating in inclusion bodies, facilitating its purification. This demonstrated chloroplasts as an effective system for the high-level production of recombinant human therapeutic proteins.
This ppt explains about molecular farming, history of molecular farming, importance, basic process underlying it, its application in agriculture and its limitations
Recombinant viral vectors are genetic engineering tools commonly used for gene transfer purpose with high transfection efficiency and site specific gene insertion.
A comprehensive study of shuttle vector & binary vector and its rules of in ...PRABAL SINGH
Vector: A vector is a DNA molecule that has the ability to replicate autonomously in an appropriate host cell and into which the DNA fragment to be cloned is integrated for cloning
This ppt explains about molecular farming, history of molecular farming, importance, basic process underlying it, its application in agriculture and its limitations
Recombinant viral vectors are genetic engineering tools commonly used for gene transfer purpose with high transfection efficiency and site specific gene insertion.
A comprehensive study of shuttle vector & binary vector and its rules of in ...PRABAL SINGH
Vector: A vector is a DNA molecule that has the ability to replicate autonomously in an appropriate host cell and into which the DNA fragment to be cloned is integrated for cloning
Introduction
Components of binary vector
Development of binary vector system
Properties of binary vector
Types of binary vector
Plant transformation using binary vector
Advantage of using binary vector
Conclusion
References
This presentation is about chloroplast transformation, the importance of chloroplast transformation on nucleus transformation and strategies for making marker-free transplastomic plant
Plant Chromosomes: European Cytogeneticists outline: Trude Schwarzacher and P...Pat (JS) Heslop-Harrison
An overview of plant molecular cytogenetics. The lecture Trude Schwarzacher presented to the ECA conference Strasbourg in July 2015 is http://www.slideshare.net/PatHeslopHarrison/trude-schwarzacher
A transplastomic plant is a genetically modified plant in which the new genes have not been inserted in the nuclear DNA but in the DNA of the chloroplasts.
Introduction
Components of binary vector
Development of binary vector system
Properties of binary vector
Types of binary vector
Plant transformation using binary vector
Advantage of using binary vector
Conclusion
References
This presentation is about chloroplast transformation, the importance of chloroplast transformation on nucleus transformation and strategies for making marker-free transplastomic plant
Plant Chromosomes: European Cytogeneticists outline: Trude Schwarzacher and P...Pat (JS) Heslop-Harrison
An overview of plant molecular cytogenetics. The lecture Trude Schwarzacher presented to the ECA conference Strasbourg in July 2015 is http://www.slideshare.net/PatHeslopHarrison/trude-schwarzacher
A transplastomic plant is a genetically modified plant in which the new genes have not been inserted in the nuclear DNA but in the DNA of the chloroplasts.
Chromosomes and molecular cytogenetics of oil palm: impact for breeding and g...Pat (JS) Heslop-Harrison
See also related talk Crops, Climate Change and Super-domestication Heslop-Harrison for Oil Palm Breeders symposium on Gearing Oil Palm Breeding and Agronomy for Climate Change: Keynote opening address MPOB PIPOC and PIPOC ISOPB ISOPA
http://www.slideshare.net/PatHeslopHarrison/heslop-harrisoncrops-climatechangesuperdomestication
Molecular cytogenetic analysis of the chromosomes of oil palm allows us to understand their evolution, genetics and segregation, genetic recombination and karyotypic stability. The cytogenetic manipulation of genomes and their chromosomes is often valuable for plant breeders to introduce and exploit new variation. Cytological landmarks such as centromeres, telomeres, heterochromatin and nucleolar organizer regions are important for the integration of physical chromosomes with the DNA sequence information. This linkage of the genetic, chromosomal and physical maps is particularly useful in a long-lived tree crop where genetic mapping requires decades of preparation and the mapping crosses may not be directly relevant to DxP commercial plantings. Repetitive DNA is often the most rapidly evolving genomic component, but is poorly understood from sequence assemblies; molecular cytogenetic studies allow its organization and variation to be studied, and the exploitation of repetitive sequences as markers and, by the amplification and mobility of transposable elements or satellite repeats, in generation of new variation.
Molecular cytogenetic approaches provide tools for oil palm genomic research, comparative genomics and evolutionary studies and further facilitate understanding the inheritance of specific traits in oil palm, including DNA methylation, epigenetics, and somaclonal variation, allowing work with hybrids, haploids and polyploids. Knowledge of the structures and organization of the chromosomes of oil palm, as in many crop species, is valuable for development of new lines, making hybrids, understanding the causes of some abnormalities or infertility, and exploiting variation and biodiversity found in related species or breeding lines.
Further information and slides from the talk will be on our website www.molcyt.com.
The presentation describes the advantages of plastid transformation over 'conventional' nuclear transformation, hurdles to plastid transformation, its advantages. The presentation also covers some successful plastid engineering and its potential.
Presented by- MD JAKIR HOSSAIN
Doctoral Research Scholar
Department of Agricultural Genetic Engineering ,
Faculty of Agricultural Sciences and Technologies,
Nigde Omer Halisdemir University, Turkey
E. Mail- mjakirbotru@gmail.com
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
DERIVATION OF MODIFIED BERNOULLI EQUATION WITH VISCOUS EFFECTS AND TERMINAL V...Wasswaderrick3
In this book, we use conservation of energy techniques on a fluid element to derive the Modified Bernoulli equation of flow with viscous or friction effects. We derive the general equation of flow/ velocity and then from this we derive the Pouiselle flow equation, the transition flow equation and the turbulent flow equation. In the situations where there are no viscous effects , the equation reduces to the Bernoulli equation. From experimental results, we are able to include other terms in the Bernoulli equation. We also look at cases where pressure gradients exist. We use the Modified Bernoulli equation to derive equations of flow rate for pipes of different cross sectional areas connected together. We also extend our techniques of energy conservation to a sphere falling in a viscous medium under the effect of gravity. We demonstrate Stokes equation of terminal velocity and turbulent flow equation. We look at a way of calculating the time taken for a body to fall in a viscous medium. We also look at the general equation of terminal velocity.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...Studia Poinsotiana
I Introduction
II Subalternation and Theology
III Theology and Dogmatic Declarations
IV The Mixed Principles of Theology
V Virtual Revelation: The Unity of Theology
VI Theology as a Natural Science
VII Theology’s Certitude
VIII Conclusion
Notes
Bibliography
All the contents are fully attributable to the author, Doctor Victor Salas. Should you wish to get this text republished, get in touch with the author or the editorial committee of the Studia Poinsotiana. Insofar as possible, we will be happy to broker your contact.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Toxic effects of heavy metals : Lead and Arsenicsanjana502982
Heavy metals are naturally occuring metallic chemical elements that have relatively high density, and are toxic at even low concentrations. All toxic metals are termed as heavy metals irrespective of their atomic mass and density, eg. arsenic, lead, mercury, cadmium, thallium, chromium, etc.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
3. Plastids are cellular organelles with circular double
stranded DNA.
Various forms of plastids are Amyloplast for storing
starch, Elaioplast for fat storage, Chromoplast for
pigment synthesis and storage and Choloroplast for
photosynthesis.
Chloroplast origin is prokaryotic.
4. ~900 chloroplasts per
plant cell
Each cell contain ~10,000
identical copies of each
plastid gene.
CpDNA is packed into
discrete structures called
chloroplast nucleoids.
Genome size :
120-160 kb
Each plastid cell contain
120 genes.
5. Risk of transgene escape: chloroplast genome is maternally
inherited so it provides gene containment thus reduces the
escape of transgene.
Expression level: Higher level and multiple transgene
expression due to polycistronic mRNA.
Homologous recombination: It minimizes the insertion of
unnecessary DNA that accompanies in nuclear genome
transformation.
Gene silencing is absent.
Disulphide bond formation and folding human proteins
results in high level production of proteins.
6. Nuclear genome Chloroplast genome
Gene silencing results in
decrease or elimination of
transgene expression.
Gene silencing is absent.
Paternal transgene inheritance
results in outcrossing among
crops and weeds.
Maternal gene inheritance in
most crop plants results in
natural gene containment.
Highly variable gene expression. Uniform gene expression.
Each transgene is independently
inserted and transcribed into a
monocistronic mRNA.
Genes transcribed into
polycistronic RNA so that
multiple transgenes can be
introduced and expressed in a
single transformation event.
7. 2 successful methods include biolistics and
polyethylene glycol mediated transfer.
Biolistic DNA delivery is used when the targets in
plastids are intact tissue.
Polyethylene glycol treatment is used for DNA
introduction into protoplasts.
Biolistics is preferred as it is less time-consuming and
demanding.
8.
9. The plastid genome segments that are included in the vector are
marked as the left (LTR) and right targeting regions (RTR). A
selectable marker gene and gene of interest is inserted in vector.
10.
11.
12. HSA is synthesized in the liver and functions as a
carrier protein for many exogenous and endogenous
metabolites and drugs.
It accounts for 60% of the total protein in blood
serum.
It is the most widely used intravenous protein in a
number of human therapies.
It is highly susceptible to proteolytic degradation in
recombinant systems and is expensive to purify.
Very low expression levels of HSA were attained
(0.02% tsp) via nuclear transformation.
13. The annual world need of HSA exceeds 500 tons.
Only source of HSA is blood so there is chance of
transmitting pathogenic viruses.
In addition, good recombinant systems are still not
available for many human proteins that are expensive
to purify or highly susceptible to proteolytic
degradation.
14. Integration of transgene cassettes into the chloroplast genome.
HSA is driven in all cassettes by the Prrn promoter upstream of the
aadA gene for spectinomycin resistance with additional promoters
and control elements.
15. Southern blot analysis.
b)Probe P1 and P2 used for southern blotting.
c)Lane 1:untransformed DNA; 2,3 :DNA from plants transformed with
pLDAsdHSA; 4,5: DNA from plants transformed with pLDApsbAHSA.
d)Plants for the first (T0) and second (T1) generation were analysed.
2,4: T0 generation. 3,5: T1 generation.
16. Analysis of HSA accumulation in transgenic chloroplasts.
(a) ELISA of HSA accumulation in leaves at different stages of development.
(b) Study after different hours of illumination. Samples of leaves were collected from
potted plants transformed with pLDApsbAHSA after the 8-h dark period or at
indicated hours in the light.
17. Colorimetric immunoblot detection of tobacco protein extracts
from mature leaves.
Total protein extracts were loaded in the gel. 1)pure HSA; 2: mw
marker; 3,5: untransformed plant extract; 4: pLDAsdHSA plant
extract; 6: pLDApsbAHSA plant extract.
18. HSA accumulation into inclusion bodies.
(a–d) EM of immunogold labelled tissues from untransformed (a)
and transformed mature leaves with the chloroplast vector
pLDApsbAHSA (b–d)
19. HSA extraction from inclusion bodies.
(a) SDS-PAGE gel showing 1: pure HSA; 2: marker; 3,4:soluble
fraction obtained after centrifugation of pLDApsbAHSA transformed
plant extract, 5: HSA after solubilization from the pellet; 6: proteins
from untransformed plant.
20. Immunoblot detection of protein extracts.
1: pure HSA; 2: HSA from a plant transformed with pLDApsbAHSA
during the solubilization process, showing mono, di and trimeric
forms; 3: proteins from an untransformed; 4: same HSA from lane 2
but in a more advanced stage of solubilization; 5: completely
monomerized HSA after the end of the solubilization treatment.
21. Plant T1 phenotypes
1,2: untransformed plants; 3: plant transformed with pLDAsdHSA;
4:plant transformed with pLDApsbAHSA.
22. 500 folds higher concentration of HSA was observed
than usual concentration.
11.1% of tsp of HSA was observed as compared to
0.02% observed in nuclear transformation.
Inclusion bodies facilitated purification of HSA .
Regulatory elements eg. psbA 5’UTR served as a
model system for enhancing expression of foreign
proteins.
23. Bogorad L. Engineering chloroplasts: an alternative site for foreign genes,
proteins, reactions and products. Trends Biotechnol. 2000; 18:257–263.
[PubMed: 10802561]
Carrio MM, Corchero JL, Villaverde A. Proteolytic digestion of bacterial
inclusion body proteins during dynamic transition between soluble and
insoluble forms. Biochim Biophys Act. 1999;1434:170–176.
Daniell H. Transformation and foreign gene expression in plants mediated
by microprojectile bombardment. Meth Mol Biol. 1997; 62:463–489.
Daniell H. Molecular strategies for gene containment in transgenic crops.
Nat Biotechnol. 2002;20:581–586. [PubMed: 12042861].
Staub JM, Garcia B, Graves J, Hajdukiewicz PT, Hunter P, Nehra N,
Paradkar V, Schlittler M, Carroll JA, Spatola L, Ward DYeG, Russell DA.
High-yield production of a human therapeutic protein in tobacco
chloroplasts. Nat Biotechnol. 2000; 18:333–338. [PubMed: 10700152]
Staub JM, Maliga P. Accumulation of D1 polypeptide in tobacco plastid is
regulated via the untranslated region of the psbA mRNA. EMBO J. 1993;
12:601–606. [PubMed: 8440249]
Staub JM, Maliga P. Translation of psbA mRNA is regulated by light via the
5′-untranslated region in tobacco plastids. Plant J. 1994; 6:547–553.
[PubMed: 7987413]