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MODE OF ACTION OF
ENZYMES
Dr.Geeta Jaiswal
Catalytic Activity of Enzymes
The main characteristics of
enzymes is their Catalytic
power and Specificity
They can accelerate
reactions at least million
times by reducing their
energy of activation.
What is this energy of
activation?
Before a chemical reaction
can occur, the reacting
molecules need to gain some
minimum amount of energy
----- which is called the Energy
of Activation.
• This energy of activation can
be decreased by increasing
the temperature.
• Since our human body is
maintained at a normal body
temperature that is 37 Degree
centigrade. This is therefore
achieved by enzymes.
 All chemical reactions have an energy
barrier separating the reactants and
products .
This barrier is called the Free Energy of
Activation
It is the energy difference between the
reactants and a high energy intermediate
that occurs during formation pf product.
A T B (conversion of A to B through
transition state T)
• All chemical
reactions have an
energy barrier
separating the
reactants and the
products .
• This barrier is
called the Free
Energy of
Activation
The role of a catalyst or enzyme is
comparable with a tunnel made in a
mountain to reduce the barrier.
It is the energy difference between
the reactants and a high energy
intermediate that occurs during
formation of product.
A  T  B
 ( Conversion of A to B through transition state T )
Free Energy of Activation:
This peak represents the transition;
state in which a high energy
intermediates is formed during the
conversion of reactant to product.
Because of large activation energy,
the rate of uncatalyzed reactions is
often low.
The rate of reaction is determined by
such energized molecules.
In general lower the energy of
activation, the more molecules have
sufficient energy to pass over the
transition state, and thus faster is the
rate of reaction.
Alternate Reaction Pathway:
An enzyme allows a reaction to proceed
rapidly under conditions prevailing in the
cell by providing an alternate reaction
pathway for a lower energy of activation.
 The enzyme does not change the free
energy of reactants or products ,therefore
does not change the equilibrium of the
reaction
Rate of Reaction:
For molecules to react they must contain
sufficient energy to overcome the energy
barrier of the transition state.
In the absence of enzyme only a small
portion of the population of molecules may
possess enough energy to achieve the
transition state between reactants and
products.
Measurement of Enzyme Activity.
Enzyme activity can be measured on the basis
of
 Enzyme catalyzed reactions are highly efficient,
proceeding at 103 to 106 times faster than
uncatalyzed reactions.
Each enzyme molecule is capable of
transforming 100 t0 1000 substrate molecules
into products per second
Turn over number
The number of molecules of
substrate converted to product per
enzyme molecule per second is
called the turn over number.
Turnover Number, kcat: is the number
of substrate molecules metabolized per
enzyme. Molecules per unit time of
min-1 or sec-1
Specific Activity:
• Specific Activity: is usually
expressed as µmol of
substrate transformed to
product per minute per
milligram of enzymes under
optimal conditions of
measurements.
Models of Enzyme-Substrate
Complex
The prime requisite for enzyme
catalysis is that the substrate (S)
combines with the enzyme (E) at the
active site to form an enzyme-
substrate (ES) complex which
ultimately results in the formation of
product (P)
Lenor Michaelis and Maud
Menten in 1913 put forward this
theory
 E + S = ES (complex)  P + E
 A few theories have been put
forth to explain mechanism of
enzyme substrate complex
formation.
Fischer’s Lock and Key Template
model
Put forward in 1894.
This model explains that
enzymes have a rigid pre shaped
configuration like a lock, and
substrate has a shape
complementary to the lock that is
like a key
Fischer’s Lock and Key Template
model
II Koshlands Induced Fit Model
put forward in 1962
Koshland’s Induced Fit Model
This model explains on the basis that
active site of an enzyme is flexible
It undergoes conformational change
to attain final catalytic shape to suit
the substrate molecule
Catalytic or Active Site of
Enzymes
The enzyme proteins are big
large sized molecules as
compared to the substrates which
are relatively smaller.
Only a portion of the enzyme
molecule is involved in the
binding of the substrate
 The portion of the enzyme protein
molecule which actually takes part in
catalysis is called the Active or
Catalytic Site.
 Although enzymes differ widely in
structure specifically there are certain
common features about the Active site
such as:-
1)Active site is a small portion of three
dimensional enzyme proteins.
2)It is situated in the crevice of the
enzyme molecule
3)To the active site a specific substrate
binds. This binding of substrate
depends on the specific groups or
atoms at the active site.
4) Specific groups come out from the
linear amino acid chain. The residues
may be far apart in a linear sequence,
but may come together to bring about
catalysis.
Active Site
5). During binding these groups may
realign themselves to provide the
unique conformational orientation, so
as to promote exact fitting of
substrate to the active site.
6). The substrate binds to the Enzyme
at the active site by – Non –Covalent
Bonds. These forces are hydrophobic
in nature.
7). The amino acids or groups that
directly participate in making or
breaking the bonds are called
Catalytic residues or groups.
8). The active site contains a
substrate binding site and a
catalytic site. Sometimes they
may be separate.
S.No Enzyme Important amino acids at Active site
1 Chymotrypsin His(57), Asp(102), Ser(195)
2 Trypsin Serine ,Histidine
3 Thrombin Serine ,Histidine
4 Phosphoglucomutase Serine
5 Alkaline Pase Serine
6 Acetyl-Cholinesterase Serine
7 Carbonic Anhydrase Cysteine
8 Hexokinase Histidine
9 Carboxy-peptidase Histidine, Arginine, Tyrosine
10 Aldolase Lysine
Enzyme Specificity
Enzyme specificity is determined by how
well the reactants fit into the enzyme
surface.
Some enzymes are very specific and
show activity with only one substrate.
However other enzymes are much less
particular and will catalyze reactions with
similar compound
Eg: Hexokinase, Glucokinase.
Types of Enzyme Specificity.
Specificity can be of three
types
Stereo specificity
Substrate Specificity
Reaction Specificity
Stereo Specificity:
 Stereo Specificity: acts on isomers holding
relevant groups in a particular configuration.
 Isomer Specificity:  Succinic Dehydrogenase
while acting on Succinic acid will give only Fumaric
acid and not Malic acid its isomer.
 Optical Specificity:D and L amino acid oxidases
 Geometric Specificity Specific for cis and Trans
bonds
Substrate Specificity:
It is of 2 types.
(a) Absolute Specificity (this is rare. )
eg:Urease will only catalyze the hydrolysis of
Urea
(b) Relative Specificity
Group dependent
Bond dependent
Group Dependent:
eg: Trypsin, Chymotrypsin
Trypsin hydrolyzes residues
of Lysine --- Arginine
Chymotrypsin ------ residue of
Aromatic a.a
Bond Specificity:
eg Proteolytic enzyme 
Peptide Bond
Glycosidases  glycosidic
bond
Lipases  ester bonds
Reaction Specificity
A substrate can undergo many reactions
In reaction specificity one enzyme can
catalyze only one reaction.
Eg: Conversion A D ,
E1 E2 E3
A B C D
( eg : Conversion 0f oxaloacetic acid to
Malic acid )
Thank - You

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Mode of acton of enz lec 2

  • 1. MODE OF ACTION OF ENZYMES Dr.Geeta Jaiswal
  • 2. Catalytic Activity of Enzymes The main characteristics of enzymes is their Catalytic power and Specificity They can accelerate reactions at least million times by reducing their energy of activation.
  • 3. What is this energy of activation? Before a chemical reaction can occur, the reacting molecules need to gain some minimum amount of energy ----- which is called the Energy of Activation.
  • 4. • This energy of activation can be decreased by increasing the temperature. • Since our human body is maintained at a normal body temperature that is 37 Degree centigrade. This is therefore achieved by enzymes.
  • 5.
  • 6.  All chemical reactions have an energy barrier separating the reactants and products . This barrier is called the Free Energy of Activation It is the energy difference between the reactants and a high energy intermediate that occurs during formation pf product. A T B (conversion of A to B through transition state T)
  • 7. • All chemical reactions have an energy barrier separating the reactants and the products . • This barrier is called the Free Energy of Activation
  • 8. The role of a catalyst or enzyme is comparable with a tunnel made in a mountain to reduce the barrier. It is the energy difference between the reactants and a high energy intermediate that occurs during formation of product. A  T  B  ( Conversion of A to B through transition state T )
  • 9. Free Energy of Activation: This peak represents the transition; state in which a high energy intermediates is formed during the conversion of reactant to product. Because of large activation energy, the rate of uncatalyzed reactions is often low.
  • 10. The rate of reaction is determined by such energized molecules. In general lower the energy of activation, the more molecules have sufficient energy to pass over the transition state, and thus faster is the rate of reaction.
  • 11.
  • 12. Alternate Reaction Pathway: An enzyme allows a reaction to proceed rapidly under conditions prevailing in the cell by providing an alternate reaction pathway for a lower energy of activation.  The enzyme does not change the free energy of reactants or products ,therefore does not change the equilibrium of the reaction
  • 13. Rate of Reaction: For molecules to react they must contain sufficient energy to overcome the energy barrier of the transition state. In the absence of enzyme only a small portion of the population of molecules may possess enough energy to achieve the transition state between reactants and products.
  • 14. Measurement of Enzyme Activity. Enzyme activity can be measured on the basis of  Enzyme catalyzed reactions are highly efficient, proceeding at 103 to 106 times faster than uncatalyzed reactions. Each enzyme molecule is capable of transforming 100 t0 1000 substrate molecules into products per second
  • 15. Turn over number The number of molecules of substrate converted to product per enzyme molecule per second is called the turn over number. Turnover Number, kcat: is the number of substrate molecules metabolized per enzyme. Molecules per unit time of min-1 or sec-1
  • 16. Specific Activity: • Specific Activity: is usually expressed as µmol of substrate transformed to product per minute per milligram of enzymes under optimal conditions of measurements.
  • 17. Models of Enzyme-Substrate Complex The prime requisite for enzyme catalysis is that the substrate (S) combines with the enzyme (E) at the active site to form an enzyme- substrate (ES) complex which ultimately results in the formation of product (P)
  • 18. Lenor Michaelis and Maud Menten in 1913 put forward this theory  E + S = ES (complex)  P + E  A few theories have been put forth to explain mechanism of enzyme substrate complex formation.
  • 19.
  • 20. Fischer’s Lock and Key Template model Put forward in 1894. This model explains that enzymes have a rigid pre shaped configuration like a lock, and substrate has a shape complementary to the lock that is like a key
  • 21. Fischer’s Lock and Key Template model
  • 22.
  • 23. II Koshlands Induced Fit Model put forward in 1962 Koshland’s Induced Fit Model This model explains on the basis that active site of an enzyme is flexible It undergoes conformational change to attain final catalytic shape to suit the substrate molecule
  • 24.
  • 25.
  • 26. Catalytic or Active Site of Enzymes The enzyme proteins are big large sized molecules as compared to the substrates which are relatively smaller. Only a portion of the enzyme molecule is involved in the binding of the substrate
  • 27.  The portion of the enzyme protein molecule which actually takes part in catalysis is called the Active or Catalytic Site.  Although enzymes differ widely in structure specifically there are certain common features about the Active site such as:- 1)Active site is a small portion of three dimensional enzyme proteins.
  • 28. 2)It is situated in the crevice of the enzyme molecule 3)To the active site a specific substrate binds. This binding of substrate depends on the specific groups or atoms at the active site. 4) Specific groups come out from the linear amino acid chain. The residues may be far apart in a linear sequence, but may come together to bring about catalysis.
  • 30.
  • 31.
  • 32. 5). During binding these groups may realign themselves to provide the unique conformational orientation, so as to promote exact fitting of substrate to the active site. 6). The substrate binds to the Enzyme at the active site by – Non –Covalent Bonds. These forces are hydrophobic in nature.
  • 33. 7). The amino acids or groups that directly participate in making or breaking the bonds are called Catalytic residues or groups. 8). The active site contains a substrate binding site and a catalytic site. Sometimes they may be separate.
  • 34. S.No Enzyme Important amino acids at Active site 1 Chymotrypsin His(57), Asp(102), Ser(195) 2 Trypsin Serine ,Histidine 3 Thrombin Serine ,Histidine 4 Phosphoglucomutase Serine 5 Alkaline Pase Serine 6 Acetyl-Cholinesterase Serine 7 Carbonic Anhydrase Cysteine 8 Hexokinase Histidine 9 Carboxy-peptidase Histidine, Arginine, Tyrosine 10 Aldolase Lysine
  • 35. Enzyme Specificity Enzyme specificity is determined by how well the reactants fit into the enzyme surface. Some enzymes are very specific and show activity with only one substrate. However other enzymes are much less particular and will catalyze reactions with similar compound Eg: Hexokinase, Glucokinase.
  • 36. Types of Enzyme Specificity. Specificity can be of three types Stereo specificity Substrate Specificity Reaction Specificity
  • 37. Stereo Specificity:  Stereo Specificity: acts on isomers holding relevant groups in a particular configuration.  Isomer Specificity:  Succinic Dehydrogenase while acting on Succinic acid will give only Fumaric acid and not Malic acid its isomer.  Optical Specificity:D and L amino acid oxidases  Geometric Specificity Specific for cis and Trans bonds
  • 38. Substrate Specificity: It is of 2 types. (a) Absolute Specificity (this is rare. ) eg:Urease will only catalyze the hydrolysis of Urea (b) Relative Specificity Group dependent Bond dependent
  • 39. Group Dependent: eg: Trypsin, Chymotrypsin Trypsin hydrolyzes residues of Lysine --- Arginine Chymotrypsin ------ residue of Aromatic a.a
  • 40. Bond Specificity: eg Proteolytic enzyme  Peptide Bond Glycosidases  glycosidic bond Lipases  ester bonds
  • 41. Reaction Specificity A substrate can undergo many reactions In reaction specificity one enzyme can catalyze only one reaction. Eg: Conversion A D , E1 E2 E3 A B C D ( eg : Conversion 0f oxaloacetic acid to Malic acid )