The slide has some brief introduction to nucleotide chemistry, History, General features of nucleotides, Nomenclature, Individual properties of bases, Classification
and Synthetic analogues of biomedical importance.
What is Glycoprotein ?:
Glycoproteins are proteins that contain oligosaccharide chains (glycans) covalently attached to polypeptide side-chains.
This process is known as glycosylation.
The carbohydrate is attached to the protein during the following modifications: Co-translational modification & Post-translational modification.
In proteins that have segments extending extracellularly, the extracellular segments are often glycosylated.
The slide has some brief introduction to nucleotide chemistry, History, General features of nucleotides, Nomenclature, Individual properties of bases, Classification
and Synthetic analogues of biomedical importance.
What is Glycoprotein ?:
Glycoproteins are proteins that contain oligosaccharide chains (glycans) covalently attached to polypeptide side-chains.
This process is known as glycosylation.
The carbohydrate is attached to the protein during the following modifications: Co-translational modification & Post-translational modification.
In proteins that have segments extending extracellularly, the extracellular segments are often glycosylated.
Sugar derivatives and reactions of monosaccharidesNamrata Chhabra
Reactions of monosaccharides, osazone formation, reduction, oxidation, reaction with acids and alkalies, ester formation and formation of amino sugars, amino sugar acids and deoxy sugars.
nucleotide chemistry & metabolism will help to students to gain knowledge about molecular basics & drugs used in certain cancer therapies , viral disorders etc.
Describes the different pathways involved in the synthesis of different eicosanoids like prostaglandins, leukotrienes, lipoxins etc along with different enzymes involved.
This is a lecture slide for MBBS, BDS, paramedical as well as for those who are interested in molecular biology, molecular life sciences, biochemistry, medical biochemistry, general biochemistry etc.
For the more elucidated and connected information, try to refer to the nucleic acids slides.
Glycoproteins and lectin ( Conjugated Carbohydrate)JasmineJuliet
Glycoprotein - Introduction, Structure, Significance. Lectin - Introduction, Structure, Significance. Lipid definition, Some review questions related to Glycoprotein and lectins
Sugar derivatives and reactions of monosaccharidesNamrata Chhabra
Reactions of monosaccharides, osazone formation, reduction, oxidation, reaction with acids and alkalies, ester formation and formation of amino sugars, amino sugar acids and deoxy sugars.
nucleotide chemistry & metabolism will help to students to gain knowledge about molecular basics & drugs used in certain cancer therapies , viral disorders etc.
Describes the different pathways involved in the synthesis of different eicosanoids like prostaglandins, leukotrienes, lipoxins etc along with different enzymes involved.
This is a lecture slide for MBBS, BDS, paramedical as well as for those who are interested in molecular biology, molecular life sciences, biochemistry, medical biochemistry, general biochemistry etc.
For the more elucidated and connected information, try to refer to the nucleic acids slides.
Glycoproteins and lectin ( Conjugated Carbohydrate)JasmineJuliet
Glycoprotein - Introduction, Structure, Significance. Lectin - Introduction, Structure, Significance. Lipid definition, Some review questions related to Glycoprotein and lectins
Lipids may be regarded as organic substances which is insoluble in water, soluble in organic solvents (alcohol , ether etc.), Triacylglycerols (formerly triglycerides) are the esters of glycerol with fatty acids.
bio chemistry
كيمياء حيوية جامعة الملك سعود
chemistry
كيمياء جامعية
0503964728
محمد منير كيمياء
ابو يوسف
all branched of chemistry bio chemistry - organic chemistry - inorganic chemistry - analytically - spectra - d-block
Rajendra Dev Bhatt (PhD Scholar)
Asst. Professor
Clinical Biochemistry & Laboratory Medicine
Fellow: Translational Research (2018-2022) in CVD in Nepal,
NHLBI & NIH USA
This is a continuation of the earlier slide with a name "Nucleotides". Please refer to the previous mentioned slide before moving to this slide for a better overall concept on nucleotides and nucleic acids.
The lecturer content is based on the Kathmandu University course syllabus. But, can be used for any undergraduate medical course for MBBS, BDS and Nursing.
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...University of Maribor
Slides from talk:
Aleš Zamuda: Remote Sensing and Computational, Evolutionary, Supercomputing, and Intelligent Systems.
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Inter-Society Networking Panel GRSS/MTT-S/CIS Panel Session: Promoting Connection and Cooperation
https://www.etran.rs/2024/en/home-english/
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
DERIVATION OF MODIFIED BERNOULLI EQUATION WITH VISCOUS EFFECTS AND TERMINAL V...Wasswaderrick3
In this book, we use conservation of energy techniques on a fluid element to derive the Modified Bernoulli equation of flow with viscous or friction effects. We derive the general equation of flow/ velocity and then from this we derive the Pouiselle flow equation, the transition flow equation and the turbulent flow equation. In the situations where there are no viscous effects , the equation reduces to the Bernoulli equation. From experimental results, we are able to include other terms in the Bernoulli equation. We also look at cases where pressure gradients exist. We use the Modified Bernoulli equation to derive equations of flow rate for pipes of different cross sectional areas connected together. We also extend our techniques of energy conservation to a sphere falling in a viscous medium under the effect of gravity. We demonstrate Stokes equation of terminal velocity and turbulent flow equation. We look at a way of calculating the time taken for a body to fall in a viscous medium. We also look at the general equation of terminal velocity.
Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...Studia Poinsotiana
I Introduction
II Subalternation and Theology
III Theology and Dogmatic Declarations
IV The Mixed Principles of Theology
V Virtual Revelation: The Unity of Theology
VI Theology as a Natural Science
VII Theology’s Certitude
VIII Conclusion
Notes
Bibliography
All the contents are fully attributable to the author, Doctor Victor Salas. Should you wish to get this text republished, get in touch with the author or the editorial committee of the Studia Poinsotiana. Insofar as possible, we will be happy to broker your contact.
ISI 2024: Application Form (Extended), Exam Date (Out), EligibilitySciAstra
The Indian Statistical Institute (ISI) has extended its application deadline for 2024 admissions to April 2. Known for its excellence in statistics and related fields, ISI offers a range of programs from Bachelor's to Junior Research Fellowships. The admission test is scheduled for May 12, 2024. Eligibility varies by program, generally requiring a background in Mathematics and English for undergraduate courses and specific degrees for postgraduate and research positions. Application fees are ₹1500 for male general category applicants and ₹1000 for females. Applications are open to Indian and OCI candidates.
The use of Nauplii and metanauplii artemia in aquaculture (brine shrimp).pptxMAGOTI ERNEST
Although Artemia has been known to man for centuries, its use as a food for the culture of larval organisms apparently began only in the 1930s, when several investigators found that it made an excellent food for newly hatched fish larvae (Litvinenko et al., 2023). As aquaculture developed in the 1960s and ‘70s, the use of Artemia also became more widespread, due both to its convenience and to its nutritional value for larval organisms (Arenas-Pardo et al., 2024). The fact that Artemia dormant cysts can be stored for long periods in cans, and then used as an off-the-shelf food requiring only 24 h of incubation makes them the most convenient, least labor-intensive, live food available for aquaculture (Sorgeloos & Roubach, 2021). The nutritional value of Artemia, especially for marine organisms, is not constant, but varies both geographically and temporally. During the last decade, however, both the causes of Artemia nutritional variability and methods to improve poorquality Artemia have been identified (Loufi et al., 2024).
Brine shrimp (Artemia spp.) are used in marine aquaculture worldwide. Annually, more than 2,000 metric tons of dry cysts are used for cultivation of fish, crustacean, and shellfish larva. Brine shrimp are important to aquaculture because newly hatched brine shrimp nauplii (larvae) provide a food source for many fish fry (Mozanzadeh et al., 2021). Culture and harvesting of brine shrimp eggs represents another aspect of the aquaculture industry. Nauplii and metanauplii of Artemia, commonly known as brine shrimp, play a crucial role in aquaculture due to their nutritional value and suitability as live feed for many aquatic species, particularly in larval stages (Sorgeloos & Roubach, 2021).
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
3. Biomedical importance and function
Thursday, June 9, 2016Rajesh Chaudhary
3
Phospholipids and Sterols are major structural elements of
cell membrane.
Role as enzyme cofactor.
Electron carrier.
Light-absorbing pigment.
Hydrophobic-anchor for proteins.
Emulsifying agent in digestive tract.
4. Categories of biological lipids
Thursday, June 9, 2016Rajesh Chaudhary
4
Eight major categories of Biological lipids
5. Lipids Vs. Fatty acids Vs.
Triacylglycerol
Thursday, June 9, 2016Rajesh Chaudhary
5
Simplest lipid constructed from Fatty
acids are Triacylglycerol, also
referred to as TG, Fat or Neutral
fat.
How are ester link formed?
6. Triacylglycerol (TG)
Thursday, June 9, 2016Rajesh Chaudhary
6
Examples of simple TG: Tripalmitin,
Tristearin, Triolein.
Types of Triacylglycerols
Simple Complex
7. Triacylglycerol (TG)
Thursday, June 9, 2016Rajesh Chaudhary
7
1. Triglycerides as storage
form of energy in
Eukaryotes and higher
vertebrates
2. Role of Lipases
8. Triacylglycerol (TG)
Thursday, June 9, 2016Rajesh Chaudhary
8
What is the advantage of having TG as a stored
fuel rather than polysaccharide such as Glycogen
and Starch?
1. The carbon atom of fatty acid are more reduced
than glycogen and starch, thus, gives more energy.
(A gram for gram)
2. TG are hydrophobic thus unhydrated. Therefore,
organisms don’t have to carry extra weight of water.
10. Classification of Lipids
Thursday, June 9, 2016Rajesh Chaudhary
10
Fatty acids are aliphatic carboxylic acid.
Are either: 1. Saturated and 2. Unsaturated
1. Saturated: doesn’t contain double bond
2. Unsaturated: contains double bond
2. Unsaturated
2.1. Monounsaturated (E.g.: Oleic acid)
2.2. Polyunsaturated (E.g.: polyethenoid, polyenoic acids)
2.3. Eicosanoids (E.g.: Prostanoids, Lipoxin and Leukotrienes)
11. Nomenclature
Thursday, June 9, 2016Rajesh Chaudhary
11
Saturated acids ends in “-anoic” acid.
Example: Octanoic acid
Unsaturated acids with double bonds end in
“-enoic” acid.
Example: Octadecenoic acid
12. Examples of saturated, monounsaturated
and polyunsaturated fatty acids
12
Mono unsaturated fatty acid (Oleic acid, C18:1)
A saturated fatty acid (Palmitic acid, C16)
A polyunsaturated fatty acid (Linoleic acid, C18:2)
13. Basic rules of nomenclature in Lipids
Thursday, June 9, 2016Rajesh Chaudhary
13
1. Carbon atoms are named from the carboxyl carbon. (Carbon No.
1)
2. The rest of the carbon following are named as: 2,3,4… and so on
– also known as “a”, “b”, “g” and so on….
3. For polyunsaturated fatty acids: The no. of carbon is named
from the opposite side of the carboxyl carbon and given the no.
(Carbon No. 1) – and called “omega (w)”.
Delta (D) is used for indicating the position and number of
double bonds.
15. Monounsaturated fatty acids
Thursday, June 9, 2016Rajesh Chaudhary
15
… acids containing one double bond.
Figure. Oleic acid. n-9 is equivalent to w9.
16. Examples
Thursday, June 9, 2016Rajesh Chaudhary
16
Palmitic acid: abbreviated form 16:0
Oleic acid: 18:1
Most commonly occurring fatty acids have even
no. of carbon chain 12 – 24.
17. Common pattern of location of
double bonds in Fatty acids
Thursday, June 9, 2016Rajesh Chaudhary
17
In most monounsaturated fatty acids, double bond is
between C9 and C10. (D9)
Other double bonds of polyunsaturated fatty acids
(PUFA) are at D12 and D15.
Exception: Arachidonic acid
In most naturally occurring PUFA have cis-configuration.
Trans-FA are produced by fermentation in rumen of
ruminants.
18. Key convention on Polyunsaturated
Fatty Acids (PUFA)
Thursday, June 9, 2016Rajesh Chaudhary
18
Double bond between the 3rd. And 4th. Carbon atom
from methyl end is of special importance in human
nutrition.
Alternative nomenclature is used for PUFA rather than
conventional one.
1. Carbon atom to the most distant site from the carboxylic
terminal gets the name “w” – the carbon no. 1.
Example: Omega-3 fatty acid.
19. Key convention in PUFAS
Thursday, June 9, 2016Rajesh Chaudhary
19
Example: Omega-3 PUFA (a-linolenic acid)
(ALA; 18:3(D9,12,15))
(EPA; 20:5(D5,8,11,14,17) (DHA; 22:6(D4,7,10,13,16,19)
An imbalance in
𝑂𝑚𝑒𝑔𝑎−6 𝑓𝑎𝑡𝑡𝑦 𝑎𝑐𝑖𝑑
𝑂𝑚𝑒𝑔𝑎−3 𝑓𝑎𝑡𝑡𝑦 𝑎𝑐𝑖𝑑
Cardiovascular diseases
Optimal ratio is 1:1 to 4:1, but North American diet contains
10:1 or 30:1.
20. Key convention in PUFA
Thursday, June 9, 2016Rajesh Chaudhary
20
The length and degree of
unsaturation affects the
melting point of
unsaturated fatty acids.
The most stable
conformation is the fully
extended form.
21. Geometric isomerism of D9, 18:1 fatty
acids (Oleic and Elaidic acids)
Thursday, June 9, 2016
21
Effect of temperature on
structure of lipids (Higher Vs.
Lower)?
Presence of acyl chains on
same side vs opposite side
around carbon containing
double bond
Arachidonic acid
22. Physical and Physiologic properties
of Fatty acids
Thursday, June 9, 2016Rajesh Chaudhary
22
Melting point of even numbered carbon fatty acids
increase with chain length and decrease according
to unsaturation.
Triacylglycerol containing three saturated fatty acids
of 12 carbons or more Vs. if, fatty acid residues
are 18:2.
Membrane lipids are liquid at room temperature.
23. Structural Lipids in Membranes
Thursday, June 9, 2016Rajesh Chaudhary
23
What are the structural lipids in membrane?
1. Glycerophospholipids (2 fatty acids + glycerol) –
hydrophobic region
2. Galactolipids & Sulfolipids (2 fatty acids + 1 glycerol) but
lacks Phosphate
3. Archael tetraether lipids (2 alkyl long chain + ether-linked to
glycerol @ both ends)
4. Sphingolipids (1 fatty acids + fatty amine (Sphingosine))
5. Sterol
24. Phospholipids Vs. Glycolipids
Thursday, June 9, 2016Rajesh Chaudhary
24
In Glycerophospolipids and some Sphingolipids, a
polar head group is joined to hydrophobic moiety
with phosphodiester linkage – these are called
“Phospholipids”.
But, some Sphingolipids lacks “Phosphate” group
but can be simple sugar or complex oligosaccharides
at their polar end – known as “Glycolipids”.
25. Some common types of storage and
membrane lipids
Thursday, June 9, 2016Rajesh Chaudhary
25
26. Glycerophospholipids
26
1. The fatty acids in the “glycerophospholipids” can be any of wide variety.
2. Distribution of molecular species is specific for different organisms, different
tissues of the same organism, and different glycerophospholipids in the same
cell or tissue.
3. In general, glycerophospholipids contain C16 or C18 @ C-1 and a C18 or
C20 @ C-2.
27. Glycerophospholipids
Thursday, June 9, 2016Rajesh Chaudhary
27
… called “Phosphoglycerides”.
2 fatty acids + 1st. And 2nd. Carbon of glycerol.
Glycerol is Prochiral.
No asymmetric carbon atom.
Some glycerophospholipids have ether-
linked fatty acids.
28. Glycerophospholipids
Thursday, June 9, 2016Rajesh Chaudhary
28
1
2
… released from leukocyte called
“basophils” and stimulate platelet
aggregation and release of
serotonine (a vasoconstrictor)
29. Sphingolipids
Thursday, June 9, 2016Rajesh Chaudhary
29
… 4th. Large class of membrane lipids.
… contains one polar head and two non-polar tails.
Doesn’t contain “glycerol”.
3 subclasses of Sphingolipids
1. sphingomyelins
2. neutral glycolipids
3. and, gangliosides
Ceramide
30. Sphingolipids
Thursday, June 9, 2016Rajesh Chaudhary
30
Sphingolipids at cell surface are
sites of biological recognition.
Many of these are specially
prominent in the plasma
membranes of neurons.
Carbohydrate moieties of certain
sphingolipids define the human
blood groups.
NOTE: Phospholipids and Sphingolipids are
degraded in lysosomes.
31. Sterols
Thursday, June 9, 2016Rajesh Chaudhary
31
… structural lipids
present in the
membrane of most
eukaryotic cells.
Cholesterol is one
major sterol.
32. Thursday, June 9, 2016Rajesh Chaudhary
32
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