Glycoprotein - Introduction, Structure, Significance. Lectin - Introduction, Structure, Significance. Lipid definition, Some review questions related to Glycoprotein and lectins
Proteoglycans are protein chains that are covalently bonded at multiple sites to a class of polysaccharides, known as glycosaminoglycans.Glycosaminoglycans constitute 95% of proteins.Proteoglycans are synthesised in RE and transported to GA where they are modified in to various forms.Proteoglycans are major component of ECM and their role is depended on the type of GAGs they associate with.
What is Glycoprotein ?:
Glycoproteins are proteins that contain oligosaccharide chains (glycans) covalently attached to polypeptide side-chains.
This process is known as glycosylation.
The carbohydrate is attached to the protein during the following modifications: Co-translational modification & Post-translational modification.
In proteins that have segments extending extracellularly, the extracellular segments are often glycosylated.
Proteoglycans are protein chains that are covalently bonded at multiple sites to a class of polysaccharides, known as glycosaminoglycans.Glycosaminoglycans constitute 95% of proteins.Proteoglycans are synthesised in RE and transported to GA where they are modified in to various forms.Proteoglycans are major component of ECM and their role is depended on the type of GAGs they associate with.
What is Glycoprotein ?:
Glycoproteins are proteins that contain oligosaccharide chains (glycans) covalently attached to polypeptide side-chains.
This process is known as glycosylation.
The carbohydrate is attached to the protein during the following modifications: Co-translational modification & Post-translational modification.
In proteins that have segments extending extracellularly, the extracellular segments are often glycosylated.
Introduction-Cell wall and functions
Gram +ve and -ve cell wall
Bacterial cell wall - structure
Peptidoglycan-Composition and Structure
Types of polysaccharidesBacterial cell wall
Functions of polysaccharides in Bacterial cell wall
Active sites of the enzyme is that point where substrate molecule bind for the chemical reaction. It is generally found on the surface of enzyme and in some enzyme it is a “Pit” like structure
The active site is a three-dimensional cleft formed by groups that come from different parts of the amino acid sequence
The active site takes up a relatively small part of the total volume of an enzyme
Active sites are clefts or crevices
Substrates are bound to enzymes by multiple weak attractions.
The specificity of binding depends on the precisely defined arrangement of atoms in an active site.
This presentation gives an overview of Lipid Rafts, how it was discovered, its importance and the future research in this area,Feel free to comment and ask any questions
Titration curve of amino acid by KK Sahu sirKAUSHAL SAHU
Introduction of amino acid
Structure of amino acid
Classification of amino acid
Non-polar aliphatic ‘R’ group
Aromatic ‘R’ group
Polar uncharged ‘R’ group
Positively charged ‘R’ group
Negatively charged ‘R’ group
What is titration curve?
Amino acid act as acid and base
Curve of amino acid
Conclusions
References
Glycoprotein, lipoprotein, by kk sahu sirKAUSHAL SAHU
INTRODUCTION
STRUCTURE
TYPES OF BONDS
N-LINKED GLYCOSYLATION
O-LINKED GLYCOSYLATION
AMOUNT OF CARBOHYDRATES PRESENT IN GLYCOPROTEIN
BIOLOGICAL SIGNIFICANCE AND
FUNCTION
BIOLOGICAL ADVANTAGE OF ADDING OLIGOSACCHARIDES TO PROTEIN
Introduction-Cell wall and functions
Gram +ve and -ve cell wall
Bacterial cell wall - structure
Peptidoglycan-Composition and Structure
Types of polysaccharidesBacterial cell wall
Functions of polysaccharides in Bacterial cell wall
Active sites of the enzyme is that point where substrate molecule bind for the chemical reaction. It is generally found on the surface of enzyme and in some enzyme it is a “Pit” like structure
The active site is a three-dimensional cleft formed by groups that come from different parts of the amino acid sequence
The active site takes up a relatively small part of the total volume of an enzyme
Active sites are clefts or crevices
Substrates are bound to enzymes by multiple weak attractions.
The specificity of binding depends on the precisely defined arrangement of atoms in an active site.
This presentation gives an overview of Lipid Rafts, how it was discovered, its importance and the future research in this area,Feel free to comment and ask any questions
Titration curve of amino acid by KK Sahu sirKAUSHAL SAHU
Introduction of amino acid
Structure of amino acid
Classification of amino acid
Non-polar aliphatic ‘R’ group
Aromatic ‘R’ group
Polar uncharged ‘R’ group
Positively charged ‘R’ group
Negatively charged ‘R’ group
What is titration curve?
Amino acid act as acid and base
Curve of amino acid
Conclusions
References
Glycoprotein, lipoprotein, by kk sahu sirKAUSHAL SAHU
INTRODUCTION
STRUCTURE
TYPES OF BONDS
N-LINKED GLYCOSYLATION
O-LINKED GLYCOSYLATION
AMOUNT OF CARBOHYDRATES PRESENT IN GLYCOPROTEIN
BIOLOGICAL SIGNIFICANCE AND
FUNCTION
BIOLOGICAL ADVANTAGE OF ADDING OLIGOSACCHARIDES TO PROTEIN
Glycoproteins are proteins which contain oligosaccharide chains covalently attached to amino acid side-chains. The carbohydrate is attached to the protein in a cotranslational or posttranslational modification. This process is known as glycosylation.
Main simple and complex proteins along with their classification are presented. Simple proteins main features. Gluten disease. Nucleic acids. Chromatine. Participation in transcription and replication. Detailed explanation of DNA and RNA structure
Similar to Glycoproteins and lectin ( Conjugated Carbohydrate) (20)
Proline introduction, extraction of proline from plant samples, estimation by ninhydrin method, principle, materials required, procedure, absorbance
observation and calculation, result, some questions and answer related to proline, videolinks
Ripening definition, Biochemistry of fruit ripening, Cell wall degradation, Modifications of cell wall components, starch into simple sugars, degradation of chlorophyll content
Estimation of reducing and nonreducing sugarsJasmineJuliet
Reducing suar, non reducing sugar introduction, examples, extraction from plant sample, estimation of reducing sugar, estimation of total sugar, detected value applied in formulas, result.
Estimation of total sugars, Extration, Total sugar introduction, estimation, principle, materials required, procedure, calculation , result , observation , colorimetry, calibration curve, important note, videolinks.
Chemical interactions of food components emulsion, gelation, browning.JasmineJuliet
Food definition, Chemical components of food, chemical interactions of food components, Emulsion, emulsifier definition, Emulsified food products, Chemical interactions of food components during emulsion, Gelation definition, gelation food products, Gelation process, Browning, Enzymatic browning, nonenzymatic browning, Maillard reaction, caramelisation, uses of browning in food industry, browning reaction in chemical pathway.
Photorespiration - Introduction, why is it occur in plants, pathway of photorespiration, Enzymes names, pathway step by step explanation, Benefits of photorespiration, additional information related to photorespiration, Rubisco enzyme, Oxygenase enzyme, Oxygen concentration higher leads to photorespiration, problem to carry out calvin cycle.
Estimation of reducing and non reducing sugarJasmineJuliet
Reducing sugar definition and example, non-reducing sugar definition and example, Estimation of reducing sugar by DNSA method, Estimation of total sugars by anthrone metod, Estimation of non-reducing sugar from amount of total sugars and reducing sugar, formula for estimation of non-reduci
Estimation of starch by anthrone methodJasmineJuliet
Starch introduction, colorimetric principle, antrone reagent preparation, anthrone method preparation, anthrone test priciple, materials required, procedure, calculation, starch content formula from glucose content, references, videolinks related to estimation of starch, stock, working standard preparation,
Coenzyme - Introduction, Definition, Examples for coenzyme, reaction catalysed by coenzyme, Types of coenzymes - cosubstrate and prosthetic group coenzymes, second type of classification of coenzyme- hydrogen group transfer , other than hydrogen group transfer.
Enzymes definitions, types & classificationJasmineJuliet
Enzyme - Introduction, Biocatalysts, Definition of enzymes, Types of enzymes, classification of enzyme, Nomenclature of enzymes, EC number, Types of enzymes with examples, and reaction.
Enzymes properties, nomenclature and classificationJasmineJuliet
Enzymes - Definition, Introduction about biocatalysts, Properties of enzymes, Specificity, capacity for regulation, Example for enzyme at specific pH, Nomenclature of enzymes, Systematic name, common name, enzyme commission number, Classification of enzymes: Oxidoreductase, Transferase, lyases, ligases, isomerases, hydrolases.
Occurrence and classification and function of alkaloidsJasmineJuliet
Alkaloids introduction, Alkaloids classification, Alkaloids function, pharmaceutical applications of alkaloids, Examples of alkaloids, Some review questions related to alkaloids.
Polysaccharide introduction, example, structure, starch, cellulose, chitin those structure and important functions and their presence in plants and animals, polysaccharide types based on functions and their composition , functions of polysaccharides , important images for relevant polysaccharides types, polysaccharide role in plants and animal cells. Starch - structure and functions, cellulose structure and functions, chitin - structure and functions
Copper -trace element, Biochemical role of copper, RDA of copper, Deficiency diseases of Copper, Cobalt - Introduction, Biochemical role of cobalt, RDA of cobalt, Deficiency diseases of cobalt, Selenium - introduction, Biochemical role of selenium, RDA of selenium, Deficiency diseases of selenium
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
2. Glycoconjugates
Glycoconjugates is the general classification for carbohydrates .
Glycoconjugates are covalently linked with other chemical species such
as proteins, peptides and other compounds.
Glycoconjugates consist of many different categories such as:
glycoproteins,
glycopeptides,
peptidoglycans,
They are involved in cell–cell interactions, including cell–cell recognition; in
cell–matrix interactions; in detoxification processes.
3.
4. Glycoproteins
The carbohydrate is an oligosaccharide chain (glycan) that is covalently
bonded to the polypeptide side chains of the protein.
Sugars in glycoproteins are attached either to the amide nitrogen atom of
asparagine (termed as N-linkage) or to the oxygen atom of serine or
threonine (termed as O-linkage).
Erythropoietin is a glycoprotein hormone present in blood serum that
stimulates production of RBC.
Most blood group antigens are glycoproteins and their specificity is
mostly determined by the oligosaccharide present on the surface of
RBC.
5.
6. Glycoprotein - Structure
Glycoproteins are proteins that contain covalently attached sugar
residues.
The hydrophilic and polar characteristics of sugars may
dramatically change the chemical characteristics of the protein to
which they are attached.
The addition of sugars is often required for a glycoprotein to
function properly and reach its ultimate destination in the cell or
organism.
7. Glycoprotein - Function
Glycoproteins serve many functions in the body.
Some glycoproteins provide structure e.g. collagens,
Some glycoproteins are involved in immunity e.g. immunoglobulins (such as
IgG).
Mucins are secreted into mucus of the respiratory and digestive tracts where the
specific mucins can retain water thus allowing mucus to serve as an effective
lubricant.
Specific glycoproteins present on the surface of red blood cells determine blood
group type
8. Lectins
Lectins are a type of protein that can bind to specific carbohydrates.
They may bind to a soluble carbohydrate or to a carbohydrate moiety
that is a part of a glycoprotein or glycolipid.
Lectin usually contains two or more binding sites for carbohydrate
units.
They typically agglutinate red blood cells. Therefore, lectins are also
called as hemagglutinins.
Some of the plant lectins are Concanavalin A, Ricin,Abrin, Wheat
germ agglutinin, Soybean lectin and Peanut lectin.
9. Lectin – Structure
Two important classes of lectins are the C-type
and P-type lectins.
The C-type lectins require calcium ion for binding
to a carbohydrate. The calcium ion will link the
sugar residue to the lectin.
P-Type lectins contain a phosphate group.
10. Lectin – Functions
The chief function of lectins is to facilitate cell-cell contact and
communication.
β - Carbohydrates on the surface of one cell bind to the binding sites of lectins
on the surface of another cell.
Binding results from numerous weak interactions which come together to form
a strong attraction.
A lectin usually contains two or more binding sites for carbohydrate units.
In addition, the carbohydrate-binding specificity of a certain lectin is
determined by the amino acid residues that bind the carbohydrate.
12. Lectin - Structure
Collectins(C-type lectins) are a part of the innate
immune system. Their function is to bind to
oligosaccharides on the surface of microorganisms.
Binding of collectins to microorganisms may trigger
elimination of microorganisms by aggregation,
complement activation, opsonization, or activation of
phagocytosis.
13. Lectin - Structure
Selectins (C-type lectins) play a role in the immune system by
recruitment of white blood cells into inflamed tissue.
White blood cells normally do not interact with the endothelium of
blood vessels. However, inflammation causes the expression of
selectin on the surface of the blood vessel wall.
Selective carbohydrate units on the surface of white blood cells
present in flowing blood can interact with the selectin.
This interaction results in "rolling" of the white blood cell on the
endothelial cell surface followed by stable adhesion and migration of
the white blood cell into the inflamed tissue.
14.
15. Lectin - Functions
Lectins stored in seeds function as storage proteins.
They also function in defense. When an invading microbe or insect
disrupts the plant’s cellular contents, the stored lectin, may
agglutinate or sicken the pathogen or predator.
Ricin is a toxic lectin present in castor seeds which inhibit protein
synthesis at ribosomes.
Legume lectins generally bind either glucose, mannose or galactose.
They are involved in the attachment of nitrogen-fixing bacteria to
legumes and in the protection against pathogens.
16. Lectin - Functions
Lectins are very essential in trafficking lysosomal hydrolases
synthesized in the golgi bodies to lysosomes.
Binding of the lectins to mannose-6-phosphate residue present on
lysosomal hydrolases mediate the transport of these enzymes to
lysosomes.
When the phosphotransferase enzyme is defective, the mannose
phosphate residue is not added to the lysosomal hydrolases and they
are not targeted to the lysosomes. They are excreted outside the cells
and also accumulate in cytosol leading to the I-cell disease.
18. Review questions
A1.O-linked oligosaccharide are attached to the protein via
a)OH group of serine and tyrosine b) OH group of serine and threonine
c) OH group of threionine and tyrosine d) OH group of threonine only
A2. Lectins are preferentially bind to
a)more polar region of the carbohydrate
b) less polar region of the carbohydrate
c) more and less polar region of the carbohydrate
d)All of the above
B1. What are lectins? (1 mark)
Lectins are a type of protein that can bind to specific carbohydrates.
B2. Give any one example for lectin?
Examples for lectins are Concanavalin A, Ricin,Abrin,
19. Review questions
C1.Write any two functions of lectin?(2 mark)
(i) Lectins stored in seeds function as storage proteins.
(ii) They also function in defense. When an invading microbe disrupts the plant’s
cellular contents, the stored lectin, may agglutinate predator.
C2.What are the significance of glycoproteins?
(i) Glycoproteins provide structure e.g. collagens.
(ii)Some glycoproteins are involved in immunity e.g. immunoglobulins (such as
IgG).
D1. Elaboratly explain the structure of lectin and their significance?(5 mark)