The document discusses enzymes and factors that affect their activity. It defines enzymes as biocatalysts that are mainly proteins and regulate the rate of biochemical reactions. Enzymes have several common features - they are produced by living cells, act outside cells, are needed in small amounts, accelerate reactions without affecting equilibrium, and are not chemically changed by reactions. The document also discusses enzyme specificity, inhibition, and factors that affect the rate of enzyme-catalyzed reactions such as substrate concentration, enzyme concentration, cofactor concentration, temperature, and pH.

1. ENZYMES
M A D E B Y
AY M A N M O H A M M E D H A N Y

2. ENZYMES
•Definition
•Enzymes are biocatalysts mainly
proteins in nature that regulate the rate
of all biochemical reactions.

3. ENZYMES
• Common Features
• All are produced by living cells and can act outside these
cells.
• They are needed in very small amounts.
• They accelerate the reaction without affecting its
equilibrium (decrease energy of activation).
• They are not changed chemically by the end of the reaction.
• They are highly specific (act on a specific substrate or inter-
related substrates).

4. ENZYME SPECIFICITY
• Enzymes are highly specific in their action, interacting with one or a
few specific substrates and catalyzing only one type of chemical
reactions.
• The specificity of enzymes is due to the nature and arrangement of
the chemical groups at the catalytic site . This allows the enzyme to
unite and activate only one substrate or a small number of structurally
related substrates.
• Importance of enzyme specificity:-
• The relatively low specificity of the digestive enzymes allows only a
few enzymes to digest all foodstuffs. The high specificity of
intracellular enzymes allows metabolic pathways to work and to be
regulated more properly.

5. CHEMICAL NATURE
• Except for ribozymes, virtually all enzymes are protein in nature;
some are simple proteins while others are conjugated proteins
(holoenzyme).
• Holoenzyme refers to the active enzyme with its nonprotein component
(cofactor), whereas the enzyme without its cofactor is termed an
apoenzyme and is inactive.
• Cofactors are organic or inorganic molecules that are required for
the activity of a certain conjugated enzymes. They participate in
substrate binding or catalysis.

9. FACTORS AFFECTING THE RATE OF
ENZYME CATALYZED REACTION
• Effect of Substrate Concentration
[S]
• The substrate concentration that
produces half the maximal velocity is
termed Michaelis constant or Km .
• Smaller Km reflects higher affinity of
the enzyme for its substrate

10. FACTORS AFFECTING THE RATE OF
ENZYME CATALYZED REACTION

11. FACTORS AFFECTING THE RATE OF
ENZYME CATALYZED REACTION
• Effect of Enzyme Concentration (E)
• As the enzyme concentration is
increased, more substrate molecules
become involved in the formation of
ES complex and the velocity of the
reaction increases.
• This is true up to a point when a
further increase in the enzyme
concentration is not accompanied by
an increase in the velocity of the
reaction

12. FACTORS AFFECTING THE RATE OF
ENZYME CATALYZED REACTION
• Effect of Concentration of Cofactors
[C]
• The velocity of the reaction will be
directly proportional to the
concentration of the cofactor. This is
true up to the point when each enzyme
molecule is associated with the
cofactor required. At this point any
increase in cofactor concentration will
not increase the velocity of the
reaction

13. FACTORS AFFECTING THE RATE OF
ENZYME CATALYZED REACTION
• - Effect of Temperature
• At 0 °C enzyme action virtually stops due to the
inhibition of movement and collision between
the substrate and enzyme molecules. As the
temperature rises the velocity of the reaction
increases due to increased kinetic energy of the
molecules and increased collision between
substrate and enzyme molecules, increasing the
formation of ES complex. The increase in the
velocity of the reaction continues up to a point,
“the optimum temperature”, beyond which any
further increase in temperature causes a
decrease in the reaction rate.
• For most enzymes, the activity virtually stops at
about 70 °C, due to denaturation of the enzyme
protein, disrupting the organization of the
catalytic site. The optimum temperature for most
animal enzymes is about 37°C, while that of most
plant enzymes is about 50 °C.

14. FACTORS AFFECTING THE RATE OF
ENZYME CATALYZED REACTION
• Effect of pH
• Each enzyme has an optimum pH at which it
shows maximal activity. Activity decreases as
we go away from the optimum pH, it virtually stops
about 2 units of pH above or below this pH.
• Slight changes in pH causes marked changes in
enzyme activity due to alteration of the charges
on the substrate and on the catalytic site of the
enzyme.
• Extreme changes of pH cause denaturation and
irreversible inhibition of enzyme action
Most enzymes have an optimum pH between 5 and 9. There are some exceptions, for example, pepsin, a
digestive enzyme in the stomach, is maximally active at pH 2, whereas other enzymes, designed to work
at neutral pH, are denatured by such an acidic environment.

15. INHIBITION OF ENZYME ACTIVITY
Inhibition of
enzymes
Reversible
Competitive
Allosteric
Uncompetitive
Non compititive
Irreversible
Protein part
(apoprotein)
Antienzymes
Block chemical
groups
OH
SH
Oxidizing
Alkylating
Salts of heavy
metals
Denaturation
Cofactors

16. I- REVERSIBLE ENZYME INHIBITION
• Competitive Inhibitors (Substrate
analogue inhibitors)
• A competitive inhibitor is structurally
similar to that of substrate. Hence, it
competes with substrate to bind
reversibly at active or catalytic site.
Thus the degree of inhibition depends
on the ratio of the concentration of the
inhibitor to that of the substrate and not
on the absolute concentration of any
of them. The inhibition also depends on
the relative affinity of the substrate and
the inhibitor to the enzyme.

17. COMPETITIVE INHIBITORS
No Effect on
Vmax
Increase of
Km

19. EXAMPLES FOR COMPETITIVE
INHIBITORS
• 1-Allopurinol is a drug used in the
treatment of gout. Gout is due to
excessive production of uric acid.
Xanthine oxidase is an enzyme
involved in the formation of uric acid
from hypoxanthine. Allopurinol is a
structural analog of hypoxanthine
and hence it is an anti-metabolite of
hypoxanthine. When it is used it blocks
the formation of uric acid by inhibiting
the enzyme xanthine oxidase.

21. EXAMPLES FOR COMPETITIVE
INHIBITORS
• Sulfonamides are used in the treatment
of bacterial infections. Bacteria
synthesize folic acid from p-
aminobenzoic acid (PABA). Since
these sulfonamide drugs contain
sulfanilamide a structural analog of
PABA, when used as chemotherapeutic
agent, it blocks the synthesis of folic
acid in bacteria which is essential for
bacterial multiplication (sulfonamides
act as a bacteriostatic agent).
Sulfonamides act as a competitive
inhibitor for the enzyme involved in the
formation of folic acid using PABA as
substrate.
PABA
H2N COOH
Sulfanilamide
H2N SO2N
Precursor Folicacid Bacterialgrowth
SulfonamideBlock

22. EXAMPLES FOR COMPETITIVE
INHIBITORS
• Dicumarol and warfarin
are used as anticoagulants because
they are structurally similar to vitamin K
(required for activation of blood clotting
factors).

24. EXAMPLES FOR COMPETITIVE
INHIBITORS
• Statins
Are competitive inhibitors of the key enzyme of cholesterol synthesis (HMG-CoA
reductase) thereby lowering plasma cholesterol levels.

25. ALLOSTERIC INHIBITORS
• They are usually small organic
molecules that bind to a
specific site away from the
catalytic site and produce
conformational changes in
protein structure that lead to
decrease activity of the
enzyme e.g. ATP for
phosphofructokinase-1.

26. ALLOSTERIC INHIBITORS
• Allosteric inhibitors
• decreases the affinity of
the enzyme to its substrate
(increase Km value) or
• decreases the maximal
catalytic activity (decrease
Vmax)
• or both

27. Allosteric inhibitor, decreased v max
increased Km
Km

28. With allosteric
inhibition

29. Allosteric
inhibitor

30. ALLOSTERIC INHIBITORS
• Feedback Inhibition: It is the inhibition of the activity of an
enzyme in a pathway by the end products of this pathway. It
may occur through binding of the end product with an
allosteric site present on the regulatory key enzyme. This
usually occurs at the earliest irreversible step unique to that
particular pathway. This prevents accumulation of
unwanted amounts of the metabolic end products.

32. INHIBITION OF ENZYME ACTIVITY
Inhibition of
enzymes
Reversible
Competitive
Allosteric
Uncompetitive
Non compititive
Irreversible
Protein part
(apoprotein)
Antienzymes
Block chemical
groups
OH
SH
Oxidizing
Alkylating
Salts of heavy
metals
Denaturation
Cofactors

33. IRREVERSIBLE ENZYME INHIBITION:
• Inhibitors that exert their effects on cofactors or prosthetic
groups
• Fluoride blocks the action of enzymes, which require Ca2+ & Mg2+
ions by chelating these ions in the form of salts e.g. chelation of
Mg2+ in case of enolase (an enzyme of glucose oxidation), results
in inhibition of the enzyme.
• Cyanide and carbon monoxide inhibit the activity of cytochrome
oxidase an enzyme of respiratory chain by blocking the iron of
heme.

34. IRREVERSIBLE ENZYME INHIBITION:
• 1- Antienzymes
• Antienzyme is specific for the enzyme that binds with it and
produces its inactivation, for example:
1. Antithrombin (activated by heparin) inhibits blood clotting.
2. α1- antitrypsin (that inhibits trypsin, antitrypsin, and
elastase released into the blood from the pancreas and
leukocytes).

35. IRREVERSIBLE ENZYME INHIBITION:
• Inhibitors that block chemical groups
• Inhibitors of the sulfhydryl group
• The presence of free SH group is important for the catalytic activity of many enzymes.
Inhibitors of the SH group, include the following:
• i- Oxidizing agents
• This is one of the effects produced in oxidative cell damage, where oxidizing agents
produce enzyme inactivation. Intracellular enzymes are protected from this effect by
different reducing agents e.g. glutathione.

36. IRREVERSIBLE ENZYME INHIBITION:
• ii- Salts of heavy metals
• The positively charged heavy metal ions e.g. Hg2+
combine with the negatively charged sulfur of the SH
group (Enz-S- Hg -S-Enz).
• iii- Alkylating agents
• Iodoactate reacts with the SH group of the enzyme
catalytic site

37. IRREVERSIBLE ENZYME INHIBITION:
•Inhibitors that block hydroxyl groups
•Aspirin produces acetylation of the hydroxyl
group of serine at the active site of
cyclooxygenase enzyme (responsible for
prostaglandin synthesis), explaining the anti
inflammatory and antipyretic actions of aspirin.

38. REGULATION OF ENZYME ACTIVITY
•I. Changing the absolute amount of the
enzyme present.
•II. Changing the catalytic activity of the
enzyme.
•III. Compartmentation of enzymes.

39. REGULATION OF ENZYME ACTIVITY
• I- Changing the Absolute Amount of the Enzyme Present
• 1- Control of Enzyme Synthesis
• Inducers are substances, which stimulate gene expression into proteins. In
case of enzymes, the inducers may be the substrate of the enzyme or
hormones.
• Repressors are substances, which inhibit gene expression into proteins. In
case of enzymes, the repressor may be a metabolic product of the enzyme or
hormones.
• 2- Control of Enzyme Degradation
• This is performed by controlling the rate of synthesis or activity of the
enzyme responsible for their degradation

40. REGULATION OF ENZYME ACTIVITY
• II. Changing the Catalytic Activity of the Enzyme.
•
• 1- Activation of Zymogens (Proenzymes)
• Many enzymes are formed in the form of proenzymes or zymogens. In this form they are
inactive. Activation requires proteolysis (removal of a part of the polypeptide chain which
masks the active site or substrate site). A good example is the formation of digestive
proteolytic enzymes as zymogens inside the cells to prevent digestion of cellular proteins.
When these zymogens are released to the gut they are activated to digest food proteins.
Many of these enzymes after activation can activate its zymogen in a process termed
autocatalytic activation (autocatalysis).
• Another good example is the activation of different blood clotting factors. Many of these
factors are formed as zymogens and activated by specific proteases.

41. REGULATION OF ENZYME ACTIVITY
• 2- Allosteric Modifiers (Inhibitors and Activators)
• Allosteric inhibition is explained before. The binding of an allosteric activator with the
allosteric site produces conformational changes in the protein structure of the enzyme,
which result in increased velocity of the reaction. Many cellular metabolic reactions are
controlled in this way e.g. AMP acts as an allosteric activator for the phosphofructokinase-1
(PFK-1). Allosteric activator increases the affinity of the enzyme to its substrate (decrease
Km value) or increases the maximal catalytic activity (increase Vmax) or both.
• 3- Covalent Modification
• Phosphorylation and dephosphorylation: Many enzymes are activated by
phosphorylation and inactivated by dephosphorylation and vice versa. This means
that the enzyme is present in two interconvertible forms (phosphorylated and
dephosphorylated). The phosphate groups are usually attached to the hydroxyl group
of amino acid residues (mainly serine or tyrosine) present in the polypeptide chain
of the enzyme.