BIOMOLECULES
Dr. Harinatha Reddy
Assistant Professor
Department of Microbiology
• Chemical analysis on a plant tissue, animal tissue or a
microbial paste..
• we obtain a list of elements like
• carbon,
• hydrogen,
• oxygen
• and several others ..
• If the same analysis is performed on a earth’s crust as
an example of non-living matter:
• we obtain a similar list.
• However, carbon and hydrogen elements is higher in
any living organism than in earth’s crust..
The element present in highest concentration in body is : Oxygen
Lowest is : Si
What are biomolecules?
• All the carbon compounds present in living cell called
‘biomolecules
Biomolecules
Bio Macromolecules Bio Micromolecules
Proteins
Polysaccharides
Nucleic acids
Amino acids
Monosaccharide's
(Glucose, Fructose)
Nucleotides
Lipids
Vitamins Molecular weight:
18 to 800 daltons (Da)
How to analyse chemical composition?
(Cl3 CCOOH)
Living tissue
How to analyse chemical composition?
• We can take any living tissue (a vegetable or a piece of
liver, etc.)..
• and grind it in trichloroacetic acid (Cl3 CCOOH) using a
mortar and a pestle.
• We obtain a thick slurry.
• If we were to strain this through a cheesecloth or
cotton we would obtain two fractions.
• One is called the filtrate or, the acid-soluble pool,..
• The second, the retentate or the acid-insoluble fraction.
• Scientists have found thousands of organic compounds
in the acid-soluble pool.
• Analytical techniques, applied to the compound give us
an idea of the molecular formula and the probable
structure of the compound.
 However, living organisms have inorganic elements and
compounds in them.
 How do we know this?
• One weighs a small amount of a living tissue (say a leaf
or liver) and dry it.
• All the water, evaporates.
• The remaining material gives dry weight.
• Now if the tissue is fully burnt,..
• All the carbon compounds are oxidised to gaseous form
CO2 and water vapour are removed.
• What is remaining is called ‘ash.
• This ash contains inorganic elements:
• like calcium, magnesium etc.
• Inorganic compounds:
• like sulphate, phosphate, etc.
• Inorganic element and compounds are also seen in the
acid-soluble fraction.
Amino acids
Amino acids are organic compounds..
• Amino acids contain an amino group and Carboxylic
acid groups attached α-carbon.
• Hence, they are called α-amino acids.
• There are four substituent groups occupying the four
valency positions.
• These are hydrogen, carboxyl group, amino group and a
variable group designated as R group.
• Based on the nature of R group there are 20 amino
acids.
• Amino acids occur in proteins..
• The R group in amino acids could be a hydrogen (the
amino acid is called glycine),
• a methyl group (alanine),
• hydroxy methyl (serine), etc.
• The chemical and physical properties of amino acids are
essentially of the amino, carboxyl and the R functional
groups.
• Based on number of amino and carboxyl groups:
• Acidic: glutamic acid and Aspertic acid.
• Basic: lysine and Arginine.
• Neutral: valine, glycine, serine, alanine
• Aromatic : tyrosine, phenylalanine, tryptophan.
• A particular property of amino acids is the ionizable
nature of –NH2 and –COOH groups.
• Hence in solutions of different pHs, the structure of
amino acids changes.
• B is called zwitterionic form
Lipids
• Lipids are generally water insoluble.
• They could be simple fatty acids.
• A fatty acid has a carboxyl group attached to an R group.
• COOH----R
• The R group could be a methyl (–CH3 ), or ethyl (–C2H5 )
or higher number of –CH2 groups (1 carbon to 19
carbons).
• Palmitic acid has 16 carbons including carboxyl carbon.
• It is Saturated lipid.
• COOH—(CH2)14—CH3
• Arachidonic acid has 20 carbon atoms including the
carboxyl carbon.
• It is Unsaturated.
• COOH—(CH2)18=CH3
• Fatty acids could be saturated (without double bond)..
• Unsaturated (with one or more C=C double bonds).
• Another simple lipid is glycerol which is trihydroxy
propane.
• Many lipids have both glycerol and fatty acids.
• Here the fatty acids are found esterified with glycerol.
• They can be then monoglycerides, diglycerides and
triglycerides..
• Lipids are also called fats and oils based on melting
point.
• Oils have lower melting point (e.g., gingely oil) and
hence remain as oil in winters..
Some lipids have phosphorous
• These are phospholipids.
• They are found in cell membrane.
• Lecithin is one example.
• Some tissues especially the neural tissues have lipids
with more complex structures…
Carbohydrates
1. Monosaccharide's:
2. Disaccharides
3. Polysaccharides
Nitrogen bases
Nitrogen bases
• Two types of nitrogen bases
• Purines: (Adenine and Guanine)
• Pyrimidines: (Cytosine, Thymine and Uracil)
Nitrogen bases are heterocyclic rings
• When Nitrogen bases attached to a sugar, they are
called nucleosides.
• If a phosphate group is also found esterified to the
sugar they are called nucleotides.
• Nitrogen bases are: adenine, guanine, cytosine, uracil,
and thymine.
• Nucleosides: Adenosine, guanosine, thymidine, uridine
and cytidine.
• Nucleotides: Adenylic acid, thymidylic acid, guanylic
acid, uridylic acid and cytidylic acid.
Nucleic acids are DNA and RNA.
• DNA and RNA Polymer of nucleotides.
• DNA and RNA function as genetic material..
Primary and secondary metabolites
Primary metabolites:
• Biomolecules, have thousands of organic compounds
including amino acids, sugars, proteins, nucleic acids
etc.
• biomolecules also known as primary metabolites..
• Primary metabolites play known roles in normal
physiologial processes
Secondary metabolites
• Plant, fungal and microbial cells, have thousands of
compounds other than these called primary metabolites..
• alkaloids,
• flavonoids,
• rubber,
• essential oils,
• antibiotics,
• coloured pigments,
• scents,
• gums,
• spices.
• These are called secondary metabolites
• we do not at the moment, understand the role or
functions of all the ‘secondary metabolites’ in host
organisms.
• However, many of them are useful to ‘human welfare’
(e.g., rubber, drugs, spices, scents and pigments).
• Some secondary metabolites have ecological
importance.
THANK YOU::::::::

Biomolecules introduction

  • 1.
    BIOMOLECULES Dr. Harinatha Reddy AssistantProfessor Department of Microbiology
  • 2.
    • Chemical analysison a plant tissue, animal tissue or a microbial paste.. • we obtain a list of elements like • carbon, • hydrogen, • oxygen • and several others ..
  • 3.
    • If thesame analysis is performed on a earth’s crust as an example of non-living matter: • we obtain a similar list. • However, carbon and hydrogen elements is higher in any living organism than in earth’s crust..
  • 4.
    The element presentin highest concentration in body is : Oxygen Lowest is : Si
  • 5.
    What are biomolecules? •All the carbon compounds present in living cell called ‘biomolecules Biomolecules Bio Macromolecules Bio Micromolecules Proteins Polysaccharides Nucleic acids Amino acids Monosaccharide's (Glucose, Fructose) Nucleotides Lipids Vitamins Molecular weight: 18 to 800 daltons (Da)
  • 6.
    How to analysechemical composition? (Cl3 CCOOH) Living tissue
  • 7.
    How to analysechemical composition? • We can take any living tissue (a vegetable or a piece of liver, etc.).. • and grind it in trichloroacetic acid (Cl3 CCOOH) using a mortar and a pestle. • We obtain a thick slurry.
  • 8.
    • If wewere to strain this through a cheesecloth or cotton we would obtain two fractions. • One is called the filtrate or, the acid-soluble pool,.. • The second, the retentate or the acid-insoluble fraction. • Scientists have found thousands of organic compounds in the acid-soluble pool.
  • 9.
    • Analytical techniques,applied to the compound give us an idea of the molecular formula and the probable structure of the compound.
  • 10.
     However, livingorganisms have inorganic elements and compounds in them.  How do we know this?
  • 11.
    • One weighsa small amount of a living tissue (say a leaf or liver) and dry it. • All the water, evaporates. • The remaining material gives dry weight.
  • 12.
    • Now ifthe tissue is fully burnt,.. • All the carbon compounds are oxidised to gaseous form CO2 and water vapour are removed. • What is remaining is called ‘ash.
  • 13.
    • This ashcontains inorganic elements: • like calcium, magnesium etc. • Inorganic compounds: • like sulphate, phosphate, etc. • Inorganic element and compounds are also seen in the acid-soluble fraction.
  • 14.
  • 15.
    Amino acids areorganic compounds.. • Amino acids contain an amino group and Carboxylic acid groups attached α-carbon. • Hence, they are called α-amino acids.
  • 16.
    • There arefour substituent groups occupying the four valency positions. • These are hydrogen, carboxyl group, amino group and a variable group designated as R group.
  • 17.
    • Based onthe nature of R group there are 20 amino acids. • Amino acids occur in proteins..
  • 19.
    • The Rgroup in amino acids could be a hydrogen (the amino acid is called glycine), • a methyl group (alanine), • hydroxy methyl (serine), etc.
  • 20.
    • The chemicaland physical properties of amino acids are essentially of the amino, carboxyl and the R functional groups. • Based on number of amino and carboxyl groups: • Acidic: glutamic acid and Aspertic acid. • Basic: lysine and Arginine. • Neutral: valine, glycine, serine, alanine • Aromatic : tyrosine, phenylalanine, tryptophan.
  • 22.
    • A particularproperty of amino acids is the ionizable nature of –NH2 and –COOH groups. • Hence in solutions of different pHs, the structure of amino acids changes. • B is called zwitterionic form
  • 23.
  • 24.
    • Lipids aregenerally water insoluble. • They could be simple fatty acids. • A fatty acid has a carboxyl group attached to an R group. • COOH----R • The R group could be a methyl (–CH3 ), or ethyl (–C2H5 ) or higher number of –CH2 groups (1 carbon to 19 carbons).
  • 25.
    • Palmitic acidhas 16 carbons including carboxyl carbon. • It is Saturated lipid. • COOH—(CH2)14—CH3 • Arachidonic acid has 20 carbon atoms including the carboxyl carbon. • It is Unsaturated. • COOH—(CH2)18=CH3
  • 26.
    • Fatty acidscould be saturated (without double bond).. • Unsaturated (with one or more C=C double bonds).
  • 27.
    • Another simplelipid is glycerol which is trihydroxy propane. • Many lipids have both glycerol and fatty acids.
  • 28.
    • Here thefatty acids are found esterified with glycerol. • They can be then monoglycerides, diglycerides and triglycerides..
  • 29.
    • Lipids arealso called fats and oils based on melting point. • Oils have lower melting point (e.g., gingely oil) and hence remain as oil in winters..
  • 30.
    Some lipids havephosphorous • These are phospholipids. • They are found in cell membrane. • Lecithin is one example.
  • 31.
    • Some tissuesespecially the neural tissues have lipids with more complex structures…
  • 32.
  • 33.
  • 34.
    Nitrogen bases • Twotypes of nitrogen bases • Purines: (Adenine and Guanine) • Pyrimidines: (Cytosine, Thymine and Uracil)
  • 35.
    Nitrogen bases areheterocyclic rings • When Nitrogen bases attached to a sugar, they are called nucleosides. • If a phosphate group is also found esterified to the sugar they are called nucleotides.
  • 36.
    • Nitrogen basesare: adenine, guanine, cytosine, uracil, and thymine. • Nucleosides: Adenosine, guanosine, thymidine, uridine and cytidine. • Nucleotides: Adenylic acid, thymidylic acid, guanylic acid, uridylic acid and cytidylic acid.
  • 37.
    Nucleic acids areDNA and RNA. • DNA and RNA Polymer of nucleotides. • DNA and RNA function as genetic material..
  • 39.
  • 40.
    Primary metabolites: • Biomolecules,have thousands of organic compounds including amino acids, sugars, proteins, nucleic acids etc. • biomolecules also known as primary metabolites.. • Primary metabolites play known roles in normal physiologial processes
  • 41.
    Secondary metabolites • Plant,fungal and microbial cells, have thousands of compounds other than these called primary metabolites.. • alkaloids, • flavonoids, • rubber, • essential oils, • antibiotics, • coloured pigments, • scents, • gums, • spices. • These are called secondary metabolites
  • 42.
    • we donot at the moment, understand the role or functions of all the ‘secondary metabolites’ in host organisms. • However, many of them are useful to ‘human welfare’ (e.g., rubber, drugs, spices, scents and pigments). • Some secondary metabolites have ecological importance.
  • 44.