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Biochemistry
UNIT I
Biomolecules
2
3
Introduction
The living
matter is
composed
of mainly
six
elements…
5
The living
matter is
composed
of mainly
six
elements…
6
The living matter is composed of
mainly six elements………….
1. Carbon,
2. Hydrogen,
3. Oxygen,
4. Nitrogen,
5. Phosphorus and
6. Sulfur. 7
The living matter is composed of
………….
These include Ca, K, Na, Cl, Mg,
Fe, I, Zn, F,
8
•A biomolecule is a chemical
compound found in living organisms.
•These include chemicals that are
composed of mainly carbon, hydrogen,
oxygen, nitrogen, sulfur and phosphorus.
9
• Biomolecules are the building blocks
of life and perform important functions
in living organisms.
•Bio = Life
•Molecule = a group of atoms held
together by bonds
10
11
12
13
14
WHAT WE
LEARN
1.Biomolecule, also called biological
molecule, any of numerous substances that
are produced by cells and living organisms.
2.Biomolecules have a wide range of sizes
and structures and perform a vast range of
functions.
3.The four major types of biomolecules are
carbohydrates, lipids, nucleic acids, and
proteins.
16
17
ACTIVITY
19
•Carbohydrates are the most abundant organic molecules in
nature.
•They are primarily composed of the elements carbon,
hydrogen and oxygen.
•The name carbohydrate literally means ‘hydrates of carbon.
•Some of the carbohydrates possess the empirical formula
(C.H2O)n
•Carbohydrates may be defined as polyhydroxyaldehydes or
ketones or compounds which produce them on hydrolysis.
20
•They are broadly classified into three major groups—
monosaccharides,oligosaccharides & polysaccharides..
21
Monosaccharides
(Greek : mono-one) are the simplest group of
carbohydrates and are often referred to as simple sugars.
They have the general formula Cn(H2O)n, and they
cannot be further hydrolysed.
The monosaccharides are divided into different categories,
based on the functional group and the number of carbon
atoms
Based on the number of carbon atoms, the
monosaccharides are regarded as trioses (3C), tetroses
(4C), pentoses (5C), hexoses (6C) and heptoses (7C).
22
Oligosaccharides
Oligosaccharides (Greek: oligo-few) contain 2-10
monosaccharide molecules which are liberated on
hydrolysis. Based on the number of monosaccharide units
present, the oligosaccharides are further subdivided to
disaccharides, trisaccharides etc.
Polysaccharides
Polysaccharides (Greek: poly-many) are polymers of
monosaccharide units with high molecular weight (up to a
million). They are usually tasteless (non-sugars) and form
colloids with water. The polysaccharides are of two types
– homopolysaccharides and heteropolysaccharides.
23
WHAT WE LEARN
24
BIOLOGICAL
FUNCTIONS
26
27
1. Dietary source of energy (4 Cal/g) for all organisms.
2. Precursors for many organic compounds (fats, amino
acids).
3. Participate in the structure of cell membrane and
cellular functions such as cell growth, adhesion and
fertilization.
4. They are structural components of many organisms.
These include the fiber (cellulose) of plants.
5. The storage form of energy (glycogen) to meet the
immediate energy demands of the body.
28
29
30
•Lipids (Greek: lipos–fat) are of great
importance to the body as the chief
concentrated storage form of energy
•Lipids may be regarded as organic substances
relatively insoluble in water, soluble in
organic solvents (alcohol, ether etc.), related to
fatty acids and utilized by the living cells.
31
•Lipids are broadly classified into simple, complex, derived
and miscellaneous lipids, which are further subdivided into
different groups.
32
•1. Simple lipids : Esters of fatty acids with alcohols.
•These are mainly of two types
(a)Fats and oils (triacylglycerols) : These are esters of
fatty acids with glycerol. The difference between fat and
oil is only physical. Thus, oil is a liquid while fat is a solid
at room temperature.
(b) Waxes : Esters of fatty acids (usually long chain) with
alcohols other than glycerol. These alcohols may be
aliphatic or alicyclic.
33
•2. Complex (or compound) lipids : These are esters of fatty acids
with alcohols containing additional groups such as phosphate,
nitrogenous base, carbohydrate, protein etc. They are further divided
as follows
(a) Phospholipids : They contain phosphoric acid and frequently a
nitrogenous base. This is in addition to alcohol and fatty acids.
(b) Glycolipids : These lipids contain a fatty acid, carbohydrate and
nitrogenous base.
(c) Lipoproteins : Macromolecular complexes of lipids with proteins.
(d) Other complex lipids : Sulfolipids, aminolipids and
lipopolysaccharides are among the other complex lipids.
34
3. Derived lipids : These are the derivatives obtained on the
hydrolysis of group 1 and group 2 lipids which possess the
characteristics of lipids.
•These include glycerol and other alcohols, fatty acids, mono- and
diacylglycerols, lipid (fat) soluble vitamins, steroid hormones,
hydrocarbons and ketone bodies.
4. Miscellaneous lipids : These include a large number of
compounds possessing the characteristics of lipids e.g., carotenoids,,
hydrocarbons such as pentacosane (in bees wax), terpenes etc.
35
NEUTRAL LIPIDS :
The lipids which are uncharged are referred to as neutral lipids. These
are mono-, di-, and triacylglycerols, cholesterol.
36
37
38
1. They are the concentrated fuel reserve of the body
2. Lipids are the constituents of membrane structure and regulate
the membrane permeability (phospholipids and cholesterol).
3. They serve as a source of fat soluble vitamins (A, D, E and K)
4. Lipids are important as cellular metabolic regulators (steroid
hormones and prostaglandins).
5. Lipids protect the internal organs, serve as insulating materials
and give shape and smooth appearance to the body.
39
40
END …..
42
43
44
45
•Protein is a chain of amino acids joined by peptide bonds in a
specific sequence.
•Protein is an essential nutrient.
•Protein is contained in every part of your body, the skin,
muscles, hair, blood, body organs, eyes, even fingernails and
bone.
•Next to water, protein is the most plentiful substance in your
body.
46
47
48
49
50
51
52
•Amino acids are a group of organic compounds
containing two functional groups— amino and
carboxyl.
•The amino group (—NH2) is basic while the
carboxyl group (—COOH) is acidic in nature.
53
1. Amino acids with aliphatic side chains
2. Hydroxyl group containing amino acids : Serine
3. Sulfur containing amino acids : Cysteine
4. Acidic amino acids and their amides
5. Basic amino acids
6. Aromatic amino acids
7. Imino acids
54
Classification of amino acids based on polarity
1. Non-polar amino acids : These amino acids are also referred to as
hydrophobic (water hating). valine,proline.
2. Polar amino acids with no charge on ‘R’ group : These amino acids, as
such, carry no charge on the ‘R’ group. They however possess groups such
as hydroxyl, sulfhydryl and amide and participate in hydrogen bonding of
protein structure. glycine, serine.
3. Polar amino acids with positive ‘R’ group : The three amino acids lysine,
arginine and histidine are included in this group.
4. Polar amino acids with negative ‘R’ group : The dicarboxylic monoamino
acids— aspartic acid and glutamic acid are considered in this group
55
56
57
58
59
60
61
•Amino acids are a group of organic compounds
containing two functional groups— amino and
carboxyl.
•The amino group (—NH2) is basic while the
carboxyl group (—COOH) is acidic in nature.
62
1. Amino acids with aliphatic side chains
2. Hydroxyl group containing amino acids : Serine
3. Sulfur containing amino acids : Cysteine
4. Acidic amino acids and their amides
5. Basic amino acids
6. Aromatic amino acids
7. Imino acids
63
Classification of amino acids based on polarity
1. Non-polar amino acids : These amino acids are also referred to as
hydrophobic (water hating). valine,proline.
2. Polar amino acids with no charge on ‘R’ group : These amino acids, as
such, carry no charge on the ‘R’ group. They however possess groups such
as hydroxyl, sulfhydryl and amide and participate in hydrogen bonding of
protein structure. glycine, serine.
3. Polar amino acids with positive ‘R’ group : The three amino acids lysine,
arginine and histidine are included in this group.
4. Polar amino acids with negative ‘R’ group : The dicarboxylic monoamino
acids— aspartic acid and glutamic acid are considered in this group
64
65
C. Nutritional classification of amino acids :
1. Essential or indispensable amino acids : The amino acids which cannot be
synthesized by the body and, therefore, need to be supplied through the diet
are called essential amino acids. They are required for proper growth and
maintenance of the individual.
The ten amino acids listed below are essential for humans (and also rats) :
Arginine, Valine, Histidine, Isoleucine, Leucine, Lysine, Methionine,
Phenylalanine, Threonine, Tryptophan.
2. Non-essential or dispensable amino acids : The body can synthesize about
10 amino acids to meet the biological needs, hence they need not be consumed
in the diet. These are—glycine, alanine, serine, cysteine, aspartate, asparagine,
glutamate, glutamine, tyrosine and proline.
66
67
68
69
There are two types of nucleic acids, namely
deoxyribonucleic acid (DNA) and ribonucleic
acid (RNA).
70
71
END
Bioenergetics
74
75
Bioenergetics or biochemical thermodynamics
deals with the study of energy changes (transfer
and utilization) in biochemical reactions.
The reactions are broadly classified as exergonic
(energy releasing) and endergonic (energy
consuming).
Free energy The energy actually available to do
work (utilizable) is known as free energy.
76
77
During a chemical reaction, heat may be released or
absorbed.
•Enthalpy is a measure of the change in heat content of the
reactants, compared to products.
•Entropy represents a change in the randomness or
disorder of reactants and products
78
79
The term high-energy compounds or energy rich
compounds is usually applied to substances which
possess sufficient free energy to liberate at least 7
Cal/mol at pH 7.0
80
81
82
83
END
85

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UNIT 1 BIOCHEMISTRY.pptx

  • 3. 3
  • 5. The living matter is composed of mainly six elements… 5
  • 6. The living matter is composed of mainly six elements… 6
  • 7. The living matter is composed of mainly six elements…………. 1. Carbon, 2. Hydrogen, 3. Oxygen, 4. Nitrogen, 5. Phosphorus and 6. Sulfur. 7
  • 8. The living matter is composed of …………. These include Ca, K, Na, Cl, Mg, Fe, I, Zn, F, 8
  • 9. •A biomolecule is a chemical compound found in living organisms. •These include chemicals that are composed of mainly carbon, hydrogen, oxygen, nitrogen, sulfur and phosphorus. 9
  • 10. • Biomolecules are the building blocks of life and perform important functions in living organisms. •Bio = Life •Molecule = a group of atoms held together by bonds 10
  • 11. 11
  • 12. 12
  • 13. 13
  • 14. 14
  • 16. 1.Biomolecule, also called biological molecule, any of numerous substances that are produced by cells and living organisms. 2.Biomolecules have a wide range of sizes and structures and perform a vast range of functions. 3.The four major types of biomolecules are carbohydrates, lipids, nucleic acids, and proteins. 16
  • 17. 17
  • 19. 19
  • 20. •Carbohydrates are the most abundant organic molecules in nature. •They are primarily composed of the elements carbon, hydrogen and oxygen. •The name carbohydrate literally means ‘hydrates of carbon. •Some of the carbohydrates possess the empirical formula (C.H2O)n •Carbohydrates may be defined as polyhydroxyaldehydes or ketones or compounds which produce them on hydrolysis. 20
  • 21. •They are broadly classified into three major groups— monosaccharides,oligosaccharides & polysaccharides.. 21
  • 22. Monosaccharides (Greek : mono-one) are the simplest group of carbohydrates and are often referred to as simple sugars. They have the general formula Cn(H2O)n, and they cannot be further hydrolysed. The monosaccharides are divided into different categories, based on the functional group and the number of carbon atoms Based on the number of carbon atoms, the monosaccharides are regarded as trioses (3C), tetroses (4C), pentoses (5C), hexoses (6C) and heptoses (7C). 22
  • 23. Oligosaccharides Oligosaccharides (Greek: oligo-few) contain 2-10 monosaccharide molecules which are liberated on hydrolysis. Based on the number of monosaccharide units present, the oligosaccharides are further subdivided to disaccharides, trisaccharides etc. Polysaccharides Polysaccharides (Greek: poly-many) are polymers of monosaccharide units with high molecular weight (up to a million). They are usually tasteless (non-sugars) and form colloids with water. The polysaccharides are of two types – homopolysaccharides and heteropolysaccharides. 23
  • 26. 26
  • 27. 27
  • 28. 1. Dietary source of energy (4 Cal/g) for all organisms. 2. Precursors for many organic compounds (fats, amino acids). 3. Participate in the structure of cell membrane and cellular functions such as cell growth, adhesion and fertilization. 4. They are structural components of many organisms. These include the fiber (cellulose) of plants. 5. The storage form of energy (glycogen) to meet the immediate energy demands of the body. 28
  • 29. 29
  • 30. 30
  • 31. •Lipids (Greek: lipos–fat) are of great importance to the body as the chief concentrated storage form of energy •Lipids may be regarded as organic substances relatively insoluble in water, soluble in organic solvents (alcohol, ether etc.), related to fatty acids and utilized by the living cells. 31
  • 32. •Lipids are broadly classified into simple, complex, derived and miscellaneous lipids, which are further subdivided into different groups. 32
  • 33. •1. Simple lipids : Esters of fatty acids with alcohols. •These are mainly of two types (a)Fats and oils (triacylglycerols) : These are esters of fatty acids with glycerol. The difference between fat and oil is only physical. Thus, oil is a liquid while fat is a solid at room temperature. (b) Waxes : Esters of fatty acids (usually long chain) with alcohols other than glycerol. These alcohols may be aliphatic or alicyclic. 33
  • 34. •2. Complex (or compound) lipids : These are esters of fatty acids with alcohols containing additional groups such as phosphate, nitrogenous base, carbohydrate, protein etc. They are further divided as follows (a) Phospholipids : They contain phosphoric acid and frequently a nitrogenous base. This is in addition to alcohol and fatty acids. (b) Glycolipids : These lipids contain a fatty acid, carbohydrate and nitrogenous base. (c) Lipoproteins : Macromolecular complexes of lipids with proteins. (d) Other complex lipids : Sulfolipids, aminolipids and lipopolysaccharides are among the other complex lipids. 34
  • 35. 3. Derived lipids : These are the derivatives obtained on the hydrolysis of group 1 and group 2 lipids which possess the characteristics of lipids. •These include glycerol and other alcohols, fatty acids, mono- and diacylglycerols, lipid (fat) soluble vitamins, steroid hormones, hydrocarbons and ketone bodies. 4. Miscellaneous lipids : These include a large number of compounds possessing the characteristics of lipids e.g., carotenoids,, hydrocarbons such as pentacosane (in bees wax), terpenes etc. 35
  • 36. NEUTRAL LIPIDS : The lipids which are uncharged are referred to as neutral lipids. These are mono-, di-, and triacylglycerols, cholesterol. 36
  • 37. 37
  • 38. 38
  • 39. 1. They are the concentrated fuel reserve of the body 2. Lipids are the constituents of membrane structure and regulate the membrane permeability (phospholipids and cholesterol). 3. They serve as a source of fat soluble vitamins (A, D, E and K) 4. Lipids are important as cellular metabolic regulators (steroid hormones and prostaglandins). 5. Lipids protect the internal organs, serve as insulating materials and give shape and smooth appearance to the body. 39
  • 40. 40
  • 42. 42
  • 43. 43
  • 44. 44
  • 45. 45
  • 46. •Protein is a chain of amino acids joined by peptide bonds in a specific sequence. •Protein is an essential nutrient. •Protein is contained in every part of your body, the skin, muscles, hair, blood, body organs, eyes, even fingernails and bone. •Next to water, protein is the most plentiful substance in your body. 46
  • 47. 47
  • 48. 48
  • 49. 49
  • 50. 50
  • 51. 51
  • 52. 52
  • 53. •Amino acids are a group of organic compounds containing two functional groups— amino and carboxyl. •The amino group (—NH2) is basic while the carboxyl group (—COOH) is acidic in nature. 53
  • 54. 1. Amino acids with aliphatic side chains 2. Hydroxyl group containing amino acids : Serine 3. Sulfur containing amino acids : Cysteine 4. Acidic amino acids and their amides 5. Basic amino acids 6. Aromatic amino acids 7. Imino acids 54
  • 55. Classification of amino acids based on polarity 1. Non-polar amino acids : These amino acids are also referred to as hydrophobic (water hating). valine,proline. 2. Polar amino acids with no charge on ‘R’ group : These amino acids, as such, carry no charge on the ‘R’ group. They however possess groups such as hydroxyl, sulfhydryl and amide and participate in hydrogen bonding of protein structure. glycine, serine. 3. Polar amino acids with positive ‘R’ group : The three amino acids lysine, arginine and histidine are included in this group. 4. Polar amino acids with negative ‘R’ group : The dicarboxylic monoamino acids— aspartic acid and glutamic acid are considered in this group 55
  • 56. 56
  • 57. 57
  • 58. 58
  • 59. 59
  • 60. 60
  • 61. 61
  • 62. •Amino acids are a group of organic compounds containing two functional groups— amino and carboxyl. •The amino group (—NH2) is basic while the carboxyl group (—COOH) is acidic in nature. 62
  • 63. 1. Amino acids with aliphatic side chains 2. Hydroxyl group containing amino acids : Serine 3. Sulfur containing amino acids : Cysteine 4. Acidic amino acids and their amides 5. Basic amino acids 6. Aromatic amino acids 7. Imino acids 63
  • 64. Classification of amino acids based on polarity 1. Non-polar amino acids : These amino acids are also referred to as hydrophobic (water hating). valine,proline. 2. Polar amino acids with no charge on ‘R’ group : These amino acids, as such, carry no charge on the ‘R’ group. They however possess groups such as hydroxyl, sulfhydryl and amide and participate in hydrogen bonding of protein structure. glycine, serine. 3. Polar amino acids with positive ‘R’ group : The three amino acids lysine, arginine and histidine are included in this group. 4. Polar amino acids with negative ‘R’ group : The dicarboxylic monoamino acids— aspartic acid and glutamic acid are considered in this group 64
  • 65. 65 C. Nutritional classification of amino acids : 1. Essential or indispensable amino acids : The amino acids which cannot be synthesized by the body and, therefore, need to be supplied through the diet are called essential amino acids. They are required for proper growth and maintenance of the individual. The ten amino acids listed below are essential for humans (and also rats) : Arginine, Valine, Histidine, Isoleucine, Leucine, Lysine, Methionine, Phenylalanine, Threonine, Tryptophan. 2. Non-essential or dispensable amino acids : The body can synthesize about 10 amino acids to meet the biological needs, hence they need not be consumed in the diet. These are—glycine, alanine, serine, cysteine, aspartate, asparagine, glutamate, glutamine, tyrosine and proline.
  • 66. 66
  • 67. 67
  • 68. 68
  • 69. 69 There are two types of nucleic acids, namely deoxyribonucleic acid (DNA) and ribonucleic acid (RNA).
  • 70. 70
  • 71. 71
  • 72. END
  • 74. 74
  • 75. 75 Bioenergetics or biochemical thermodynamics deals with the study of energy changes (transfer and utilization) in biochemical reactions. The reactions are broadly classified as exergonic (energy releasing) and endergonic (energy consuming). Free energy The energy actually available to do work (utilizable) is known as free energy.
  • 76. 76
  • 77. 77 During a chemical reaction, heat may be released or absorbed. •Enthalpy is a measure of the change in heat content of the reactants, compared to products. •Entropy represents a change in the randomness or disorder of reactants and products
  • 78. 78
  • 79. 79 The term high-energy compounds or energy rich compounds is usually applied to substances which possess sufficient free energy to liberate at least 7 Cal/mol at pH 7.0
  • 80. 80
  • 81. 81
  • 82. 82
  • 83. 83
  • 84. END
  • 85. 85