Biochemistry ‒ An Overview
R. C. Gupta
M.D. (Biochemistry)
Jaipur, India
Living organisms are made up of chemical
elements organized into bio-molecules
Important bio-molecules include nucleic
acids, proteins, carbohydrates, lipids etc
These are made up of C, H, O and N with
small amounts of some other elements
Several inorganic elements are also
present in living organisms
By themselves, the bio-molecules and
the inorganic elements are non-living
But when they come together in a cell,
they confer the property of ‘life’ to the cell
Cell is the structural and functional unit of
all living organisms
It obtains raw materials required for
sustaining itself from its environment
From raw materials, it produces the
biological catalysts (enzymes) that
catalyse biochemical reactions in the cell
With the help of enzymes, the cell oxidizes
the bio-molecules to extract energy
It can convert raw materials into complex
molecules and supra-molecular assemblies
Chemical events occurring in the cell
keep it in a dynamic steady state, even in
a continually changing environment
And finally, the cell has the remarkable
ability to reproduce itself
Biochemistry encompasses
the study of:
Bio-molecules and elements
essential for life
The chemical reactions they
undergo to subserve various
functions of the organism
Unicellular organisms, e.g. bacteria, are
made up of a single cell having a simple
architecture
Multicellular organisms have a highly
organized cellular architecture
Multicellular
Unicellular
An adult human being has nearly 1014
cells
These cells are of different types having
different shapes, sizes and functions
The cells are organized into tissues and
tissues into organs
This differentiation gives us the advantage
of division of labour
But it also poses the problem of cell-cell
communication and co-ordination
A simple event like removing our hand
on touching a hot object involves a
series of reactions
These reactions occur in different types
of cells involving a number of ions and
molecules
Biochemistry seeks to explain such
complex biological phenomena at the
molecular level
The structural organization of cells
differs from organism to organism
But there is a remarkable degree of
unity in this diversity
The bio-molecules present in different
types of cells are similar
The information molecules, ribonucleic acid
and deoxyribonucleic acid, are similar
They are made up of the same nucleotides
The genetic code is the same
The proteins are made up of the same
twenty amino acids
The biological catalysts are similar
The currency of energy is the same
The metabolic pathways are similar
Due to this similarity, information
obtained in one organism can be
extrapolated to others
Much of the information about human
biochemistry has been obtained from
experiments in simple organisms like
bacteria
The scope of biochemistry is very wide
It covers plants, animals, microbes,
industry etc
Human biochemistry concerns the bio-
chemistry of human health and disease
Study of human biochemistry covers:
• Chemistry of amino acids and proteins
• Enzymes
• Chemistry of carbohydrates and lipids
• Metabolism of carbohydrates, lipids,
amino acids and proteins
• Bio-energetics and oxidative
phosphorylation
• Molecular biology
Continued …
• Vitamins and minerals
• Hormones
• Nutrition and dietetics
• Maintenance of pH, water and
electrolyte balance
• Cancer
• Immunochemistry
• Xenobiotics
Amino acids are the building blocks for
synthesis of proteins
Proteins form the structural framework
of tissues and perform a variety of
other functions in the form of enzymes,
hormones, receptors, antibodies etc
Chemistry of amino acids and proteins
Enzymes are the universal catalysts of
the living world
No reaction in living organisms can occur
at a significant rate without enzymes
Enzymes
With a few exceptions, all enzymes are
proteins
They have unique three-dimensional
structures suited to their catalytic
functions
Enzymes also play a crucial role in
metabolic regulation
One (or a few) key enzyme(s) regulate
a metabolic pathway
Rates of reactions are regulated by
altering the concentration or catalytic
activity of the key enzyme(s)
Many diseases can be diagnosed by
measuring the levels of some enzymes
in biological fluids e.g. plasma
Many inhibitors of enzymes are used as
drugs
Some enzymes themselves are used as
drugs
Carbohydrates and lipids are used
mainly as sources of energy
Carbohydrates constitute the largest
component of our daily diet
Chemistry of carbohydrates and lipids
Lipids constitute the major storage form
of energy
Some carbohydrates and lipids perform
structural roles as well
The chemical reactions the biomolecules
undergo in the body constitute metabolism
The process begins with the digestion of
complex biomolecules
This is followed by absorption of the
products of digestion
Metabolism of carbohydrates, lipids,
amino acids and proteins
The metabolic
processes include:
Anabolism i.e. synthesis of large
molecules from small precursors
Catabolism i.e. breakdown of
large molecules
Anabolism and catabolism occur by a
series of reactions
Each reaction series constitutes a
metabolic pathway
There are a number of pathways for
metabolism of carbohydrates, lipids and
amino acids
While studying metabolic pathways,
we should look at their:
• Tissue distribution
• Intracellular location
• Reactions
• Energetics
• Regulation
• Importance
• Disorders
Metabolic disorders occur due to a
block in some reaction of the pathway
The block occurs owing to a mutated,
dysfunctional enzyme
Energy is released during oxidation of
carbohydrates, lipids and amino acids
It is captured by oxidative phosphorylation
It is utilized in anabolic pathways and for
muscle contraction, active transport etc
Bio-energetics and oxidative
phosphorylation
Adenosine triphosphate (ATP) is the
universal currency of energy
ATP is formed during energy-yielding
(exergonic) reactions
ATP is utilized in energy-consuming
(endergonic) activities
Molecular biology is the study of nucleic
acids and their building blocks
Nucleic acids are deoxyribonucleic acid
(DNA) and ribonucleic acid (RNA)
Their building blocks are nucleotides
Molecular biology
DNA and RNA are known as information
molecules
Genetic information is present in DNA in
the form of genes
A gene possesses coded information
about amino acid sequence of a protein
An RNA transcript of gene carries
information from DNA to the ribosomes
Using this information, the protein is
synthesized on the ribosome
During cell division, DNA of the cell is
exactly replicated
The daughter cells acquire the genetic
information present in the parent cell
Study of molecular biology
includes processes like:
Replication (synthesis of DNA)
Transcription (synthesis of RNA)
Translation (synthesis of proteins)
Recombinant DNA technology
Recombinant DNA technology has led to
a revolution in molecular biology
Its study comprises the study of its tools,
techniques and applications
Recombinant DNA technology is finding
applications in all life sciences
Vitamins are a group of chemically
diverse organic compounds required in
minute quantities but essential for life
Many vitamins act as coenzymes,
essential for the activity of a number of
enzymes
Vitamins
Some vitamins are required for growth,
differentiation, vision etc
Deficient intake of most, and excessive
intake of some, vitamins produces
specific diseases
Study of vitamins covers their:
• Chemistry
• Functions
• Requirements
• Dietary sources
• Diseases resulting from deficient or
excessive intake
A number of minerals are essential for
human beings
Some are required in relatively large
quantities (macronutrients)
Others are required in minute quantities
(micronutrients)
Minerals
Minerals are required for:
• Formation of bones (Ca and P)
• Nerve conduction (Na and K)
• Formation of haemoglobin (Fe)
• Activity of enzymes (Cu, Zn, Se etc)
Study of minerals covers their:
• Functions
• Requirements
• Dietary sources
• Diseases resulting from deficient or
excessive intake
Hormones are mobile signal molecules
They carry signals from one organ,
tissue or cell to another
They are required for intercellular
communication and co-ordination
Hormones
Hormones help the organism to respond
to any change in internal or external
environment in a coordinated manner
Small changes in the concentrations of
hormones produce profound physio-
logical and biochemical effects
Under- or over-production of hormones
produces serious disorders
Diagnosis of these disorders usually
requires biochemical measurement of
hormone concentrations in blood
Water constitutes nearly two-thirds of
the body weight in an adult man
Water is the universal solvent of the
living world
It is the medium in which all biochemical
reactions occur
Maintenance of pH, water and
electrolyte balance
Small changes in water content, distri-
bution of electrolytes and pH of body
fluids can derange normal functioning
Such changes can occur in a variety of
diseases
Correction of the imbalance requires a
sound understanding of normal regulatory
mechanisms
We obtain all the nutrients we require,
viz. carbohydrates, lipids, proteins,
vitamins and minerals, from food
Malnutrition (under- and over-nutrition)
is common all over the world
Nutrition and dietetics
Diseases resulting from under-nutrition
afflict large sections of poor
Over-nutrition is the bane of the rich
Ignorance contributes significantly to
both
Correction of under-nutrition and over-
nutrition requires a sound knowledge of
principles of nutrition and dietetics
Dietary advice is required in some non-
nutritional diseases also
Cancer (malignancy) has emerged as a
leading cause of death worldwide
A number of physical, chemical and bio-
logical agents are known to cause cancer
Cancer
Molecular mechanisms that transform a
healthy cell into a cancer cell have eluded
us for a long time
Advances in molecular biology are now
revealing the interplay of anti-oncogenes,
proto-oncogenes and onco-genes
This complex interplay can transform a
normal cell into a cancer cell
We are exposed to a vast range of foreign
antigens that can cause disease
To protect us against these antigens, we
have a very competent immune system
The immune system comprises innate
immunity and adaptive immunity
Immunochemistry
A number of molecules are involved in
recognition and inactivation of antigens
Immunochemistry is the study of mole-
cules of immune recognition and the
mechanisms by which the foreign
antigens are dealt with
Apart from antigens, we are exposed to a
variety of foreign chemicals, known as
xenobiotics, that can cause toxicity
Through biochemistry, we understand the
mechanisms by which the xenobiotics are
detoxified and excreted
Xenobiotics
Study of human biochemistry, thus,
gives us insights into the molecular
basis of complex biological phenomena
Biochemistry is, therefore, described as
the chemical language of life
This chemical language helps us:
• In understanding the normal functioning
of the body at molecular level
• In unraveling the molecular basis of
diseases
• In diagnosing diseases by laboratory
investigations
• In treatment by providing enzymes,
enzyme inhibitors and gene therapy
Biochemistry   an overview

Biochemistry an overview

  • 1.
    Biochemistry ‒ AnOverview R. C. Gupta M.D. (Biochemistry) Jaipur, India
  • 2.
    Living organisms aremade up of chemical elements organized into bio-molecules Important bio-molecules include nucleic acids, proteins, carbohydrates, lipids etc These are made up of C, H, O and N with small amounts of some other elements
  • 3.
    Several inorganic elementsare also present in living organisms By themselves, the bio-molecules and the inorganic elements are non-living But when they come together in a cell, they confer the property of ‘life’ to the cell
  • 5.
    Cell is thestructural and functional unit of all living organisms It obtains raw materials required for sustaining itself from its environment From raw materials, it produces the biological catalysts (enzymes) that catalyse biochemical reactions in the cell
  • 6.
    With the helpof enzymes, the cell oxidizes the bio-molecules to extract energy It can convert raw materials into complex molecules and supra-molecular assemblies
  • 7.
    Chemical events occurringin the cell keep it in a dynamic steady state, even in a continually changing environment And finally, the cell has the remarkable ability to reproduce itself
  • 8.
    Biochemistry encompasses the studyof: Bio-molecules and elements essential for life The chemical reactions they undergo to subserve various functions of the organism
  • 9.
    Unicellular organisms, e.g.bacteria, are made up of a single cell having a simple architecture Multicellular organisms have a highly organized cellular architecture
  • 10.
  • 11.
    An adult humanbeing has nearly 1014 cells These cells are of different types having different shapes, sizes and functions
  • 12.
    The cells areorganized into tissues and tissues into organs This differentiation gives us the advantage of division of labour But it also poses the problem of cell-cell communication and co-ordination
  • 13.
    A simple eventlike removing our hand on touching a hot object involves a series of reactions
  • 14.
    These reactions occurin different types of cells involving a number of ions and molecules Biochemistry seeks to explain such complex biological phenomena at the molecular level
  • 15.
    The structural organizationof cells differs from organism to organism But there is a remarkable degree of unity in this diversity The bio-molecules present in different types of cells are similar
  • 16.
    The information molecules,ribonucleic acid and deoxyribonucleic acid, are similar They are made up of the same nucleotides The genetic code is the same
  • 17.
    The proteins aremade up of the same twenty amino acids The biological catalysts are similar The currency of energy is the same The metabolic pathways are similar
  • 18.
    Due to thissimilarity, information obtained in one organism can be extrapolated to others Much of the information about human biochemistry has been obtained from experiments in simple organisms like bacteria
  • 19.
    The scope ofbiochemistry is very wide It covers plants, animals, microbes, industry etc Human biochemistry concerns the bio- chemistry of human health and disease
  • 20.
    Study of humanbiochemistry covers: • Chemistry of amino acids and proteins • Enzymes • Chemistry of carbohydrates and lipids • Metabolism of carbohydrates, lipids, amino acids and proteins • Bio-energetics and oxidative phosphorylation • Molecular biology Continued …
  • 21.
    • Vitamins andminerals • Hormones • Nutrition and dietetics • Maintenance of pH, water and electrolyte balance • Cancer • Immunochemistry • Xenobiotics
  • 22.
    Amino acids arethe building blocks for synthesis of proteins Proteins form the structural framework of tissues and perform a variety of other functions in the form of enzymes, hormones, receptors, antibodies etc Chemistry of amino acids and proteins
  • 23.
    Enzymes are theuniversal catalysts of the living world No reaction in living organisms can occur at a significant rate without enzymes Enzymes
  • 24.
    With a fewexceptions, all enzymes are proteins They have unique three-dimensional structures suited to their catalytic functions
  • 25.
    Enzymes also playa crucial role in metabolic regulation One (or a few) key enzyme(s) regulate a metabolic pathway Rates of reactions are regulated by altering the concentration or catalytic activity of the key enzyme(s)
  • 26.
    Many diseases canbe diagnosed by measuring the levels of some enzymes in biological fluids e.g. plasma Many inhibitors of enzymes are used as drugs Some enzymes themselves are used as drugs
  • 27.
    Carbohydrates and lipidsare used mainly as sources of energy Carbohydrates constitute the largest component of our daily diet Chemistry of carbohydrates and lipids
  • 28.
    Lipids constitute themajor storage form of energy Some carbohydrates and lipids perform structural roles as well
  • 29.
    The chemical reactionsthe biomolecules undergo in the body constitute metabolism The process begins with the digestion of complex biomolecules This is followed by absorption of the products of digestion Metabolism of carbohydrates, lipids, amino acids and proteins
  • 30.
    The metabolic processes include: Anabolismi.e. synthesis of large molecules from small precursors Catabolism i.e. breakdown of large molecules
  • 31.
    Anabolism and catabolismoccur by a series of reactions Each reaction series constitutes a metabolic pathway There are a number of pathways for metabolism of carbohydrates, lipids and amino acids
  • 32.
    While studying metabolicpathways, we should look at their: • Tissue distribution • Intracellular location • Reactions • Energetics • Regulation • Importance • Disorders
  • 33.
    Metabolic disorders occurdue to a block in some reaction of the pathway The block occurs owing to a mutated, dysfunctional enzyme
  • 34.
    Energy is releasedduring oxidation of carbohydrates, lipids and amino acids It is captured by oxidative phosphorylation It is utilized in anabolic pathways and for muscle contraction, active transport etc Bio-energetics and oxidative phosphorylation
  • 35.
    Adenosine triphosphate (ATP)is the universal currency of energy ATP is formed during energy-yielding (exergonic) reactions ATP is utilized in energy-consuming (endergonic) activities
  • 36.
    Molecular biology isthe study of nucleic acids and their building blocks Nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) Their building blocks are nucleotides Molecular biology
  • 37.
    DNA and RNAare known as information molecules Genetic information is present in DNA in the form of genes A gene possesses coded information about amino acid sequence of a protein
  • 38.
    An RNA transcriptof gene carries information from DNA to the ribosomes Using this information, the protein is synthesized on the ribosome
  • 39.
    During cell division,DNA of the cell is exactly replicated The daughter cells acquire the genetic information present in the parent cell
  • 40.
    Study of molecularbiology includes processes like: Replication (synthesis of DNA) Transcription (synthesis of RNA) Translation (synthesis of proteins) Recombinant DNA technology
  • 41.
    Recombinant DNA technologyhas led to a revolution in molecular biology Its study comprises the study of its tools, techniques and applications Recombinant DNA technology is finding applications in all life sciences
  • 42.
    Vitamins are agroup of chemically diverse organic compounds required in minute quantities but essential for life Many vitamins act as coenzymes, essential for the activity of a number of enzymes Vitamins
  • 43.
    Some vitamins arerequired for growth, differentiation, vision etc Deficient intake of most, and excessive intake of some, vitamins produces specific diseases
  • 44.
    Study of vitaminscovers their: • Chemistry • Functions • Requirements • Dietary sources • Diseases resulting from deficient or excessive intake
  • 45.
    A number ofminerals are essential for human beings Some are required in relatively large quantities (macronutrients) Others are required in minute quantities (micronutrients) Minerals
  • 46.
    Minerals are requiredfor: • Formation of bones (Ca and P) • Nerve conduction (Na and K) • Formation of haemoglobin (Fe) • Activity of enzymes (Cu, Zn, Se etc)
  • 47.
    Study of mineralscovers their: • Functions • Requirements • Dietary sources • Diseases resulting from deficient or excessive intake
  • 48.
    Hormones are mobilesignal molecules They carry signals from one organ, tissue or cell to another They are required for intercellular communication and co-ordination Hormones
  • 49.
    Hormones help theorganism to respond to any change in internal or external environment in a coordinated manner Small changes in the concentrations of hormones produce profound physio- logical and biochemical effects
  • 50.
    Under- or over-productionof hormones produces serious disorders Diagnosis of these disorders usually requires biochemical measurement of hormone concentrations in blood
  • 51.
    Water constitutes nearlytwo-thirds of the body weight in an adult man Water is the universal solvent of the living world It is the medium in which all biochemical reactions occur Maintenance of pH, water and electrolyte balance
  • 52.
    Small changes inwater content, distri- bution of electrolytes and pH of body fluids can derange normal functioning Such changes can occur in a variety of diseases Correction of the imbalance requires a sound understanding of normal regulatory mechanisms
  • 53.
    We obtain allthe nutrients we require, viz. carbohydrates, lipids, proteins, vitamins and minerals, from food Malnutrition (under- and over-nutrition) is common all over the world Nutrition and dietetics
  • 54.
    Diseases resulting fromunder-nutrition afflict large sections of poor Over-nutrition is the bane of the rich Ignorance contributes significantly to both
  • 55.
    Correction of under-nutritionand over- nutrition requires a sound knowledge of principles of nutrition and dietetics Dietary advice is required in some non- nutritional diseases also
  • 56.
    Cancer (malignancy) hasemerged as a leading cause of death worldwide A number of physical, chemical and bio- logical agents are known to cause cancer Cancer
  • 57.
    Molecular mechanisms thattransform a healthy cell into a cancer cell have eluded us for a long time Advances in molecular biology are now revealing the interplay of anti-oncogenes, proto-oncogenes and onco-genes This complex interplay can transform a normal cell into a cancer cell
  • 58.
    We are exposedto a vast range of foreign antigens that can cause disease To protect us against these antigens, we have a very competent immune system The immune system comprises innate immunity and adaptive immunity Immunochemistry
  • 59.
    A number ofmolecules are involved in recognition and inactivation of antigens Immunochemistry is the study of mole- cules of immune recognition and the mechanisms by which the foreign antigens are dealt with
  • 60.
    Apart from antigens,we are exposed to a variety of foreign chemicals, known as xenobiotics, that can cause toxicity Through biochemistry, we understand the mechanisms by which the xenobiotics are detoxified and excreted Xenobiotics
  • 61.
    Study of humanbiochemistry, thus, gives us insights into the molecular basis of complex biological phenomena Biochemistry is, therefore, described as the chemical language of life
  • 62.
    This chemical languagehelps us: • In understanding the normal functioning of the body at molecular level • In unraveling the molecular basis of diseases • In diagnosing diseases by laboratory investigations • In treatment by providing enzymes, enzyme inhibitors and gene therapy