Virus assembly is a key step in the viral replication cycle that involves transporting viral proteins and nucleic acids through the cell and assembling them into new viral particles. There are three main steps:
1) Assembly of the protein shell or capsid from individual proteins or polyprotein precursors, sometimes with the aid of chaperone proteins.
2) Selective packaging of the viral genome.
3) Some viruses acquire an envelope by budding through cellular membranes during the assembly process.
CaMV Genome organization & their replication, Cauliflower Mosaic Virus belong to Group VII (ds-DNA-RT), Open circular double stranded DNA of 80kb and CaMV replicates by reverse transcription
This document discusses the Cauliflower Mosaic Virus (CaMV) and its potential use for gene transfer in plants. CaMV is a plant virus that infects brassica plants like cauliflower and turnips. It has a circular double-stranded DNA genome and is spherical in shape. The 35S promoter from CaMV is commonly used in plant transformation due to its strong constitutive expression in dicots. For gene transfer, foreign DNA can be inserted into the non-essential genes II or VII of CaMV. However, CaMV has limitations for gene transfer due to its limited insertion capacity and loss of infectivity if too many nucleotides are added.
Animal viruses are self replicating, intracellular parasites that completely rely on host animal cell for reproduction. They use the host's cellular components to replicate, then leaves the host cell to infect other cells.
This document summarizes information about PolyomaVirus. It notes that PolyomaVirus has a non-enveloped, naked icosahedral capsid around 45nm in diameter that contains a closed circular double-stranded DNA genome. It encodes for viral capsid proteins VP1, VP2, and VP3. Examples given are JC virus which can cause progressive multifocal leukoencephalopathy in immunocompromised individuals, and BK virus which can cause renal disease in transplant patients. Transmission is via respiratory fluids or urine and infection may be asymptomatic or cause fever, with diagnosis via PCR or blood/urine tests. There is no effective treatment without toxicity, only supportive care or immunosuppress
The document discusses host and virus interaction, including the stages of viral infection and types of virus-cell interaction. It provides details on:
1. The stages of viral infection include primary infection of cells at the site of entry, viremia where the virus enters the bloodstream, and secondary infection of other organs.
2. Virus-cell interaction can be cytocidal, causing cell death, or non-cytocidal where cells survive infection. Persistent and latent infections allow long-term virus maintenance in cells.
3. Common sites of viral entry into the host include respiratory, urogenital, ocular, and skin routes, which viruses access by exploiting breaches in barriers.
Retroviruses are a family of viruses that contain the enzyme reverse transcriptase which allows their RNA genetic material to be transcribed into DNA. The retrovirus family includes HIV. Retroviruses infect vertebrates and have an envelope containing glycoproteins. Their lifecycle involves transcribing their RNA genome into DNA inside the host cell and integrating that DNA into the host genome. HIV is a lentivirus that causes AIDS in humans. It is approximately 100 nanometers in diameter and has an envelope with spike proteins and a bullet-shaped core containing its two RNA strands and enzyme proteins. The two main types are HIV-1, which is most common worldwide, and HIV-2, which is concentrated in West Africa
Satellite viruses are sub-viral agents that depend on a helper virus for replication. The first reported satellite virus was Tobacco necrosis satellite virus. Satellite viruses contain nucleic acids enclosed in a protein coat and lack genes for replication. Satellite genomes can be single-stranded RNA, DNA, or circular RNA.
Satellite RNAs are small, linear or circular RNA strands found in certain multicomponent virus particles. They do not encode their own coat protein and depend on a helper virus for replication and encapsidation.
Viroids were discovered in 1971 and are small, circular, naked RNA molecules that replicate independently using host polymerases. Well-studied viroids include potato spindle tuber viroid and av
The document discusses key concepts related to host-pathogen relationships and the occurrence and spread of infectious diseases. It defines important terms like infection, disease, colonization, and defines the roles of the host and pathogen. It describes the chain of infection and factors that influence a host's resistance or susceptibility to disease. It also outlines common routes of entry for pathogens, signs and symptoms for different types of infections, and ways that pathogens can spread within the body and between hosts through different modes of transmission.
CaMV Genome organization & their replication, Cauliflower Mosaic Virus belong to Group VII (ds-DNA-RT), Open circular double stranded DNA of 80kb and CaMV replicates by reverse transcription
This document discusses the Cauliflower Mosaic Virus (CaMV) and its potential use for gene transfer in plants. CaMV is a plant virus that infects brassica plants like cauliflower and turnips. It has a circular double-stranded DNA genome and is spherical in shape. The 35S promoter from CaMV is commonly used in plant transformation due to its strong constitutive expression in dicots. For gene transfer, foreign DNA can be inserted into the non-essential genes II or VII of CaMV. However, CaMV has limitations for gene transfer due to its limited insertion capacity and loss of infectivity if too many nucleotides are added.
Animal viruses are self replicating, intracellular parasites that completely rely on host animal cell for reproduction. They use the host's cellular components to replicate, then leaves the host cell to infect other cells.
This document summarizes information about PolyomaVirus. It notes that PolyomaVirus has a non-enveloped, naked icosahedral capsid around 45nm in diameter that contains a closed circular double-stranded DNA genome. It encodes for viral capsid proteins VP1, VP2, and VP3. Examples given are JC virus which can cause progressive multifocal leukoencephalopathy in immunocompromised individuals, and BK virus which can cause renal disease in transplant patients. Transmission is via respiratory fluids or urine and infection may be asymptomatic or cause fever, with diagnosis via PCR or blood/urine tests. There is no effective treatment without toxicity, only supportive care or immunosuppress
The document discusses host and virus interaction, including the stages of viral infection and types of virus-cell interaction. It provides details on:
1. The stages of viral infection include primary infection of cells at the site of entry, viremia where the virus enters the bloodstream, and secondary infection of other organs.
2. Virus-cell interaction can be cytocidal, causing cell death, or non-cytocidal where cells survive infection. Persistent and latent infections allow long-term virus maintenance in cells.
3. Common sites of viral entry into the host include respiratory, urogenital, ocular, and skin routes, which viruses access by exploiting breaches in barriers.
Retroviruses are a family of viruses that contain the enzyme reverse transcriptase which allows their RNA genetic material to be transcribed into DNA. The retrovirus family includes HIV. Retroviruses infect vertebrates and have an envelope containing glycoproteins. Their lifecycle involves transcribing their RNA genome into DNA inside the host cell and integrating that DNA into the host genome. HIV is a lentivirus that causes AIDS in humans. It is approximately 100 nanometers in diameter and has an envelope with spike proteins and a bullet-shaped core containing its two RNA strands and enzyme proteins. The two main types are HIV-1, which is most common worldwide, and HIV-2, which is concentrated in West Africa
Satellite viruses are sub-viral agents that depend on a helper virus for replication. The first reported satellite virus was Tobacco necrosis satellite virus. Satellite viruses contain nucleic acids enclosed in a protein coat and lack genes for replication. Satellite genomes can be single-stranded RNA, DNA, or circular RNA.
Satellite RNAs are small, linear or circular RNA strands found in certain multicomponent virus particles. They do not encode their own coat protein and depend on a helper virus for replication and encapsidation.
Viroids were discovered in 1971 and are small, circular, naked RNA molecules that replicate independently using host polymerases. Well-studied viroids include potato spindle tuber viroid and av
The document discusses key concepts related to host-pathogen relationships and the occurrence and spread of infectious diseases. It defines important terms like infection, disease, colonization, and defines the roles of the host and pathogen. It describes the chain of infection and factors that influence a host's resistance or susceptibility to disease. It also outlines common routes of entry for pathogens, signs and symptoms for different types of infections, and ways that pathogens can spread within the body and between hosts through different modes of transmission.
Creative Biolabs has extensive experience in coronavirus research. Provide comprehensive high-quality coronavirus (SARS-CoV-2, SARS-CoV, MERS-CoV, etc.) related services and products.
This slide provides a brief introduction to SARS-CoV-2. If you need more knowledge, products and services related to SARS-CoV-2, please follow us.
This document summarizes key information about viroids. It defines viroids as the smallest known infectious agents, consisting of small circular RNA molecules without capsids. The first viroid discovered was the potato spindle tuber viroid. Viroids are obligate parasites that replicate through a rolling circle mechanism in the nucleus of host cells. They have extensive intrastrand base pairing that allows them to avoid degradation. While viroids do not code for proteins, the hepatitis D viroid produces two RNA molecules, one that codes for the delta antigen protein. Viroids can cause economic losses through various plant diseases.
The document discusses plant viruses. It begins by outlining learning objectives about plant virus infections, life cycles, transmission, structures, classification, replication, symptoms, identification, and control. It then provides details on the characteristics of plant viruses, including their non-cellular nature and dependence on host cells. The document discusses plant virus transmission methods, proteins, capsids, classifications, replication cycles for different types of viruses, symptoms, and methods of detection, identification, and control.
The document discusses the different types of nucleic acids that viruses can use to store their genetic information, including double-stranded DNA, single-stranded DNA, double-stranded RNA, negative-sense RNA, positive-sense RNA, and positive-sense RNA retroviruses. It provides details on how each type replicates and produces viral mRNA.
Virology is the study of viruses, which were not well understood until the late 1800s. Early discoveries included Lady Montagu observing inoculation against smallpox in Turkey in the 18th century and Edward Jenner developing the smallpox vaccine using cowpox virus in 1798. In the late 19th century, the development of bacterial filters allowed viruses to be isolated and shown to be smaller than bacteria, causing diseases even when bacteria were removed. By the early 20th century, it was established that viruses could cause diseases in plants, animals, and humans and were distinct from bacteria.
This document discusses techniques for purifying viruses, specifically density gradient centrifugation and isopycnic centrifugation. Density gradient centrifugation separates particles based on their buoyant densities by layering solutions of decreasing density in a centrifuge tube, then centrifuging the virus sample on top for a short time. This allows different viruses to separate into discrete zones based on their sedimentation rates. Isopycnic centrifugation forms the density gradient during a long, high-speed centrifugation, allowing separation of particles that differ slightly in density but not size. Precipitation with ammonium sulfate or ethanol can also be used to purify viruses.
Modified M13 vectors have a large number of cloning sites which allow for insertion of foreign DNA. These vectors are derived from the M13 bacteriophage and are commonly used for DNA sequencing, mapping and mutagenesis experiments in molecular biology research. The document appears to be a seminar topic submission about using the M13 phage for biotechnology applications.
DNA vaccines work by injecting DNA encoding antigens from pathogens. The host cells use this DNA to produce antigens, which are then displayed on the cell surface and trigger both humoral and cellular immune responses. DNA vaccines offer advantages over traditional vaccines like avoiding infectious organisms, not requiring refrigeration, and stimulating both arms of the immune system. They have shown protection against diseases in animal studies and have potential applications for influenza, hepatitis B, HIV, and malaria vaccines. However, DNA vaccines also have disadvantages like weak immune responses in humans.
Lambda phage is a bacteriophage that infects E. coli bacteria. It has two life cycles: a lytic cycle and a lysogenic cycle. In the lytic cycle, the phage genome is transferred into the bacterial cell where it replicates and causes the bacterial cell to burst, releasing new phage particles. In the lysogenic cycle, the phage genome integrates into the bacterial chromosome and replicates with the host DNA without killing the cell. The phage can switch between these two cycles depending on environmental conditions inside the infected bacterial cell.
- Adenovirus, parvovirus, and polyomavirus are DNA viruses that cause respiratory illnesses and other diseases.
- Adenovirus has a medium sized dsDNA genome and causes respiratory illness, conjunctivitis, and gastroenteritis. Parvovirus has a small ssDNA genome and targets erythroid cells, causing fifth disease. Polyomavirus has a small dsDNA genome and establishes kidney persistence, with potential reactivation and progression to PML.
- The viruses replicate in the nucleus and spread locally or via viremia. Immunity is important for control of adenovirus and parvovirus.
The document discusses the structure, classification, and replication of viruses. It begins by describing different viral structural components, including the capsid, envelope, and nucleic acid core. Viruses are classified based on their nucleic acid composition and structure, focusing on whether they have DNA or RNA genomes and whether they are enveloped or not. The document also examines different capsid structures like icosahedral, helical, and complex shapes. It provides examples of representative virus families and discusses how viruses are named.
Toga virus is a family of viruses that belong to group IV and contain a linear, single-stranded, positive sense RNA genome. They form spherical enveloped particles between 65-70 nm in diameter. Mosquitoes are the primary vector for transmitting Toga viruses between their natural hosts of humans, mammals, birds and mosquitoes themselves. Diseases associated with different Toga virus subgroups include alphaviruses causing arthritis and encephalitis, and rubiviruses which can cause congenital rubella syndrome or respiratory infections.
Coronaviruses are a family of viruses that cause illness ranging from the common cold to more severe diseases. They are spherical or helical in shape, 80 to 220 nm in diameter, and have positive-sense RNA genomes. Coronaviruses infect humans and other mammals via the respiratory or gastrointestinal tract. Upon cell entry, the viral RNA is translated and replicates to produce structural and accessory proteins which assemble into new virus particles. Major diseases caused by coronaviruses include the common cold and more severe illness such as SARS, MERS and COVID-19.
Recombinant vaccines use genetic engineering techniques to produce antigens that induce protective immunity. They offer advantages over conventional vaccines like improved safety and defined composition. Recombinant vaccines work by inserting genes for antigens into vectors like viruses. This allows the vector to produce the antigen and elicit an immune response. They can target specific cells and induce immunity through multiple routes of administration. While live recombinant vaccines carry a risk of reversion, they elicit strong immune responses from just one or a few doses. Future areas of development include improved delivery methods and use of immunomodulators and plant expression systems.
Satellite viruses are small viruses that require a helper virus for replication and movement. They have their own coat protein but depend on the helper virus. There are three subgroups: 1) large messenger RNA satellites up to 1.5kb that encode proteins, 2) small linear non-coding RNAs under 800 nucleotides, and 3) small circular RNAs under 400 nucleotides. Satellite viruses modulate symptoms of helper viruses and can be developed into expression vectors.
A bacteriophage (informally, phage) is a virus that infects and replicates within a bacterium. The term is derived from "bacteria" and the Greek (phagein), "to devour". Bacteriophages are composed of proteins that encapsulate a DNA or RNA genome, and may have relatively simple or elaborate structures. Their genomes may encode as few as four genes, and as many as hundreds of genes. Phages replicate within the bacterium following the injection of their genome into its cytoplasm. Bacteriophages are among the most common and diverse entities in the biosphere.
Phages are widely distributed in locations populated by bacterial hosts, such as soil or the intestines of animals. One of the densest natural sources for phages and other viruses is sea water, where up to 9×108 virions per milliliter have been found in microbial mats at the surface,] and up to 70% of marine bacteria may be infected by phages. They have been used for over 90 years as an alternative to antibiotics in the former Soviet Union and Central Europe, as well as in France. They are seen as a possible therapy against multi-drug-resistant strains of many bacteria (see phage therapy). Nevertheless, phages of Inoviridae have been shown to complicate biofilms involved in pneumonia and cystic fibrosis, shelter the bacteria from drugs meant to eradicate disease and promote persistent infection
Viruses can be used to deliver genetic material into target cells. Viruses are composed of genetic material encapsulated in a protein coat. They inject their DNA into target cells, and the viral DNA can be altered to contain a gene of interest. This allows the gene of interest to be delivered into the target cell without producing new viral particles. Adenoviruses are non-enveloped DNA viruses that can infect both dividing and non-dividing cells. They are used as vectors for gene delivery by deleting early genes and adding the gene of interest.
1. The document discusses the replication strategy of viruses in plants. It describes the key steps: entry into the plant cell, uncoating of the viral nucleic acid, replication of the nucleic acid, synthesis of viral proteins, and assembly of new virus particles.
2. Different types of plant viruses contain double stranded DNA, single stranded DNA, or single or double stranded RNA as their nucleic acid. The virus uses the host cell's machinery for energy production, protein synthesis, and other functions to replicate.
3. Replication of single stranded RNA viruses involves the viral RNA acting as mRNA to produce an RNA-dependent RNA polymerase. This polymerase then produces complementary RNA which serves as the template to generate more copies of the original
Viruses have unique characteristics such as being energy-less and composed of genetic material surrounded by a protein coat or capsid. They replicate by taking over a host cell's machinery to produce new viral components. There are two main types of viruses - DNA and RNA viruses - which differ in their genetic material and replication process. The lecture describes the structure of viruses including the capsid, envelope, and nucleic acids, and classifies viruses according to these components as well as the effects of viral infection on the host cell.
Creative Biolabs has extensive experience in coronavirus research. Provide comprehensive high-quality coronavirus (SARS-CoV-2, SARS-CoV, MERS-CoV, etc.) related services and products.
This slide provides a brief introduction to SARS-CoV-2. If you need more knowledge, products and services related to SARS-CoV-2, please follow us.
This document summarizes key information about viroids. It defines viroids as the smallest known infectious agents, consisting of small circular RNA molecules without capsids. The first viroid discovered was the potato spindle tuber viroid. Viroids are obligate parasites that replicate through a rolling circle mechanism in the nucleus of host cells. They have extensive intrastrand base pairing that allows them to avoid degradation. While viroids do not code for proteins, the hepatitis D viroid produces two RNA molecules, one that codes for the delta antigen protein. Viroids can cause economic losses through various plant diseases.
The document discusses plant viruses. It begins by outlining learning objectives about plant virus infections, life cycles, transmission, structures, classification, replication, symptoms, identification, and control. It then provides details on the characteristics of plant viruses, including their non-cellular nature and dependence on host cells. The document discusses plant virus transmission methods, proteins, capsids, classifications, replication cycles for different types of viruses, symptoms, and methods of detection, identification, and control.
The document discusses the different types of nucleic acids that viruses can use to store their genetic information, including double-stranded DNA, single-stranded DNA, double-stranded RNA, negative-sense RNA, positive-sense RNA, and positive-sense RNA retroviruses. It provides details on how each type replicates and produces viral mRNA.
Virology is the study of viruses, which were not well understood until the late 1800s. Early discoveries included Lady Montagu observing inoculation against smallpox in Turkey in the 18th century and Edward Jenner developing the smallpox vaccine using cowpox virus in 1798. In the late 19th century, the development of bacterial filters allowed viruses to be isolated and shown to be smaller than bacteria, causing diseases even when bacteria were removed. By the early 20th century, it was established that viruses could cause diseases in plants, animals, and humans and were distinct from bacteria.
This document discusses techniques for purifying viruses, specifically density gradient centrifugation and isopycnic centrifugation. Density gradient centrifugation separates particles based on their buoyant densities by layering solutions of decreasing density in a centrifuge tube, then centrifuging the virus sample on top for a short time. This allows different viruses to separate into discrete zones based on their sedimentation rates. Isopycnic centrifugation forms the density gradient during a long, high-speed centrifugation, allowing separation of particles that differ slightly in density but not size. Precipitation with ammonium sulfate or ethanol can also be used to purify viruses.
Modified M13 vectors have a large number of cloning sites which allow for insertion of foreign DNA. These vectors are derived from the M13 bacteriophage and are commonly used for DNA sequencing, mapping and mutagenesis experiments in molecular biology research. The document appears to be a seminar topic submission about using the M13 phage for biotechnology applications.
DNA vaccines work by injecting DNA encoding antigens from pathogens. The host cells use this DNA to produce antigens, which are then displayed on the cell surface and trigger both humoral and cellular immune responses. DNA vaccines offer advantages over traditional vaccines like avoiding infectious organisms, not requiring refrigeration, and stimulating both arms of the immune system. They have shown protection against diseases in animal studies and have potential applications for influenza, hepatitis B, HIV, and malaria vaccines. However, DNA vaccines also have disadvantages like weak immune responses in humans.
Lambda phage is a bacteriophage that infects E. coli bacteria. It has two life cycles: a lytic cycle and a lysogenic cycle. In the lytic cycle, the phage genome is transferred into the bacterial cell where it replicates and causes the bacterial cell to burst, releasing new phage particles. In the lysogenic cycle, the phage genome integrates into the bacterial chromosome and replicates with the host DNA without killing the cell. The phage can switch between these two cycles depending on environmental conditions inside the infected bacterial cell.
- Adenovirus, parvovirus, and polyomavirus are DNA viruses that cause respiratory illnesses and other diseases.
- Adenovirus has a medium sized dsDNA genome and causes respiratory illness, conjunctivitis, and gastroenteritis. Parvovirus has a small ssDNA genome and targets erythroid cells, causing fifth disease. Polyomavirus has a small dsDNA genome and establishes kidney persistence, with potential reactivation and progression to PML.
- The viruses replicate in the nucleus and spread locally or via viremia. Immunity is important for control of adenovirus and parvovirus.
The document discusses the structure, classification, and replication of viruses. It begins by describing different viral structural components, including the capsid, envelope, and nucleic acid core. Viruses are classified based on their nucleic acid composition and structure, focusing on whether they have DNA or RNA genomes and whether they are enveloped or not. The document also examines different capsid structures like icosahedral, helical, and complex shapes. It provides examples of representative virus families and discusses how viruses are named.
Toga virus is a family of viruses that belong to group IV and contain a linear, single-stranded, positive sense RNA genome. They form spherical enveloped particles between 65-70 nm in diameter. Mosquitoes are the primary vector for transmitting Toga viruses between their natural hosts of humans, mammals, birds and mosquitoes themselves. Diseases associated with different Toga virus subgroups include alphaviruses causing arthritis and encephalitis, and rubiviruses which can cause congenital rubella syndrome or respiratory infections.
Coronaviruses are a family of viruses that cause illness ranging from the common cold to more severe diseases. They are spherical or helical in shape, 80 to 220 nm in diameter, and have positive-sense RNA genomes. Coronaviruses infect humans and other mammals via the respiratory or gastrointestinal tract. Upon cell entry, the viral RNA is translated and replicates to produce structural and accessory proteins which assemble into new virus particles. Major diseases caused by coronaviruses include the common cold and more severe illness such as SARS, MERS and COVID-19.
Recombinant vaccines use genetic engineering techniques to produce antigens that induce protective immunity. They offer advantages over conventional vaccines like improved safety and defined composition. Recombinant vaccines work by inserting genes for antigens into vectors like viruses. This allows the vector to produce the antigen and elicit an immune response. They can target specific cells and induce immunity through multiple routes of administration. While live recombinant vaccines carry a risk of reversion, they elicit strong immune responses from just one or a few doses. Future areas of development include improved delivery methods and use of immunomodulators and plant expression systems.
Satellite viruses are small viruses that require a helper virus for replication and movement. They have their own coat protein but depend on the helper virus. There are three subgroups: 1) large messenger RNA satellites up to 1.5kb that encode proteins, 2) small linear non-coding RNAs under 800 nucleotides, and 3) small circular RNAs under 400 nucleotides. Satellite viruses modulate symptoms of helper viruses and can be developed into expression vectors.
A bacteriophage (informally, phage) is a virus that infects and replicates within a bacterium. The term is derived from "bacteria" and the Greek (phagein), "to devour". Bacteriophages are composed of proteins that encapsulate a DNA or RNA genome, and may have relatively simple or elaborate structures. Their genomes may encode as few as four genes, and as many as hundreds of genes. Phages replicate within the bacterium following the injection of their genome into its cytoplasm. Bacteriophages are among the most common and diverse entities in the biosphere.
Phages are widely distributed in locations populated by bacterial hosts, such as soil or the intestines of animals. One of the densest natural sources for phages and other viruses is sea water, where up to 9×108 virions per milliliter have been found in microbial mats at the surface,] and up to 70% of marine bacteria may be infected by phages. They have been used for over 90 years as an alternative to antibiotics in the former Soviet Union and Central Europe, as well as in France. They are seen as a possible therapy against multi-drug-resistant strains of many bacteria (see phage therapy). Nevertheless, phages of Inoviridae have been shown to complicate biofilms involved in pneumonia and cystic fibrosis, shelter the bacteria from drugs meant to eradicate disease and promote persistent infection
Viruses can be used to deliver genetic material into target cells. Viruses are composed of genetic material encapsulated in a protein coat. They inject their DNA into target cells, and the viral DNA can be altered to contain a gene of interest. This allows the gene of interest to be delivered into the target cell without producing new viral particles. Adenoviruses are non-enveloped DNA viruses that can infect both dividing and non-dividing cells. They are used as vectors for gene delivery by deleting early genes and adding the gene of interest.
1. The document discusses the replication strategy of viruses in plants. It describes the key steps: entry into the plant cell, uncoating of the viral nucleic acid, replication of the nucleic acid, synthesis of viral proteins, and assembly of new virus particles.
2. Different types of plant viruses contain double stranded DNA, single stranded DNA, or single or double stranded RNA as their nucleic acid. The virus uses the host cell's machinery for energy production, protein synthesis, and other functions to replicate.
3. Replication of single stranded RNA viruses involves the viral RNA acting as mRNA to produce an RNA-dependent RNA polymerase. This polymerase then produces complementary RNA which serves as the template to generate more copies of the original
Viruses have unique characteristics such as being energy-less and composed of genetic material surrounded by a protein coat or capsid. They replicate by taking over a host cell's machinery to produce new viral components. There are two main types of viruses - DNA and RNA viruses - which differ in their genetic material and replication process. The lecture describes the structure of viruses including the capsid, envelope, and nucleic acids, and classifies viruses according to these components as well as the effects of viral infection on the host cell.
Viruses are the smallest known infectious agents and lack cellular organization. They contain either DNA or RNA but not both, and are obligate intracellular parasites that depend on host cell machinery for replication. Viruses infect host cells through attachment to receptors, then undergo a replication process involving uncoating, biosynthesis, maturation, and release of new virions. Their structure can be enveloped or nonenveloped, with capsids that have different symmetries and surface proteins important for infection.
Viruses are the smallest known infectious agents and lack cellular organization. They contain either DNA or RNA, but not both, and are obligate intracellular parasites that depend on host cell machinery for replication. Viruses infect host cells through attachment to receptors and are then uncoated inside the cell. They hijack the host cell to synthesize viral components and assemble new viral particles that are then released to infect other cells.
Virus infection and replication occurs in several steps:
1. The virus attaches to and enters the host plant cells, usually through wounds caused by vectors like insects or mechanical damage.
2. Once inside the cell, the viral genome is released from its protein coat through uncoating.
3. The viral genome then hijacks the host cell machinery to replicate, transcribe mRNA, and translate proteins.
New viral genomes and capsids are assembled and the mature virions are released to infect new cells.
Viral replication by Kainat Ramzan-SlideShareKainatRamzan3
Virus multiplication are in Following steps: attached, penetration, biosynthesis, maturation, assembly and release and also discribe the life of Bacteriophage by following two life cycle
Present By Kainat Ramzan
Viruses rely on host cells to replicate as they cannot do so independently. There are six basic stages of viral replication: 1) attachment to host cell receptors, 2) penetration of the host cell, 3) uncoating of the viral capsid, 4) replication of viral genetic material and proteins, 5) assembly of new viral particles, and 6) release of new virus particles through lysis or budding. The replication process differs between DNA and RNA viruses as well as between viruses with positive-sense and negative-sense genomes, but generally involves the virus taking over host cell machinery to produce more viruses and spread infection.
The entry mechanism of corona virus into the host cell.SayanKar9
The document summarizes the entry, replication cycle, and transmission of coronavirus in host cells. It discusses that coronavirus binds to ACE2 receptors on host cells and enters via endosomes. The viral RNA is released and replicates, producing more RNA and structural proteins. New virions are assembled and released from the host cell through vesicles and exocytosis. Coronavirus utilizes its RNA polymerase and produces subgenomic mRNA to hijack the host cell's machinery and replicate efficiently. The replicated virions then infect other cells, completing the coronavirus life cycle.
The document summarizes key aspects of virology. It describes that viruses are small infectious agents that contain either DNA or RNA and use the machinery of host cells to replicate. Viruses infect cells and program them to produce new viral components for assembly of new virus particles. The document then discusses viral structure, morphology, replication cycles involving attachment, entry, uncoating, production of components, assembly and release. It also covers pathogenesis, diagnosis, cultivation, and methods for prevention and treatment of viral infections including vaccines, interferons and antiviral drugs.
Viruses consist of genetic material and proteins but lack cellular structure. They replicate by taking over host cell processes. There are two main classification systems - Baltimore system classifies based on mRNA synthesis, ICTV system uses genome properties and structure. Viruses can be isolated from samples and cultured in vivo or in vitro. They are quantified using plaque assays, PCR, ELISA or other methods. Bacteriophages follow lytic or lysogenic cycles to infect bacteria and can transfer genes between bacteria through transduction.
This document discusses different types of vectors that can be used for genetic engineering, including animal viruses, plant viruses, retroviruses, shuttle vectors, and binary vectors. It provides details on the structure and use of tobacco mosaic virus (TMV) as a plant viral vector, describing how foreign genes can be stably replicated and spread systemically in plants using this system. It also summarizes key features of yeast episomal plasmids (YEps), retroviral vectors based on murine leukemia virus, and the binary vector system used for plant transformation via Agrobacterium tumefaciens.
The document summarizes the virus replication cycle. It occurs in living host cells and involves several key steps:
1) Attachment and entry of the virus into the host cell.
2) Uncoating of the viral genome from the protein shell.
3) Synthesis of viral mRNA and proteins using the host cell machinery.
4) Replication of the viral genome.
5) Assembly of new viral particles.
6) Release of progeny viruses through cell lysis or budding, which is how enveloped viruses acquire their lipid envelope. The cycle can take 6-40 hours depending on the virus.
Bacteriophage is the most common and extensively studied virus. The life cycle of bacteriophages. The transfer of their genetic system via the process of transduction (Generalised and Specialised) and studying the gene mapping in phages. This theoretical explanation about viruses and their genetic system will help the learner in the fields of biotechnology, microbiology, basic science, life science, and various other fields of biology.
This document provides an overview of viruses, including:
- The history of virus discovery from Iwanowski's experiments in 1892 showing that the cause of tobacco mosaic disease was able to pass through filters that removed bacteria.
- Characteristics of viruses that distinguish them from living cells, including being acellular and only able to reproduce within host cells.
- The components of viruses, which include nucleic acids and protein capsids, with some viruses also having envelopes.
- The replication cycles of bacteriophages and how they can either undergo lytic or lysogenic cycles, and the replication processes of enveloped DNA, RNA, and retroviruses within host cells.
- Emerging viruses
1. Bovine papillomavirus (BPV) vectors utilize the circular, double-stranded DNA genome of BPV. The BPV genome contains early and late regions and can transform cells without integrating.
2. There are three main types of BPV vectors. All contain the transforming 69% fragment of BPV and bacterial sequences. One type inserts a gene of interest, another adds a stimulating gene, and the third uses the full BPV genome.
3. Transformation efficiency is highest with the full BPV genome due to an enhancer in the non-transforming region. Stimulating genes can replace this enhancer's function when parts of the genome are removed. BPV vectors provide amplified
01 general structure and classification of viruses1tuancnshk33
Viruses are smaller than bacteria, ranging from 20-300 nanometers in size. They contain either DNA or RNA, but not both, surrounded by a protein coat. Viruses replicate only inside living cells and do not have organelles like mitochondria. They are classified based on their nucleic acid composition and structure into groups with cubic, helical, or complex symmetry. Major virus families include DNA viruses like herpes and RNA viruses like influenza. The virus replication cycle involves attachment, entry, uncoating, replication, assembly and release of new virus particles.
Virology is the study of viruses and their relationship with hosts. Viruses are acellular organisms that can only replicate inside host cells. They have nucleic acid genomes and use host cell machinery to assemble new viral particles. Viruses come in a variety of shapes and sizes, and some have envelopes derived from host cell membranes. They enter host cells, express their genes, replicate their genomes, assemble new viral particles, and exit host cells to infect new targets. Viruses are cultivated using various methods including cell cultures, embryonated eggs, and animal models to study viral replication and pathogenesis.
Immersive Learning That Works: Research Grounding and Paths ForwardLeonel Morgado
We will metaverse into the essence of immersive learning, into its three dimensions and conceptual models. This approach encompasses elements from teaching methodologies to social involvement, through organizational concerns and technologies. Challenging the perception of learning as knowledge transfer, we introduce a 'Uses, Practices & Strategies' model operationalized by the 'Immersive Learning Brain' and ‘Immersion Cube’ frameworks. This approach offers a comprehensive guide through the intricacies of immersive educational experiences and spotlighting research frontiers, along the immersion dimensions of system, narrative, and agency. Our discourse extends to stakeholders beyond the academic sphere, addressing the interests of technologists, instructional designers, and policymakers. We span various contexts, from formal education to organizational transformation to the new horizon of an AI-pervasive society. This keynote aims to unite the iLRN community in a collaborative journey towards a future where immersive learning research and practice coalesce, paving the way for innovative educational research and practice landscapes.
Describing and Interpreting an Immersive Learning Case with the Immersion Cub...Leonel Morgado
Current descriptions of immersive learning cases are often difficult or impossible to compare. This is due to a myriad of different options on what details to include, which aspects are relevant, and on the descriptive approaches employed. Also, these aspects often combine very specific details with more general guidelines or indicate intents and rationales without clarifying their implementation. In this paper we provide a method to describe immersive learning cases that is structured to enable comparisons, yet flexible enough to allow researchers and practitioners to decide which aspects to include. This method leverages a taxonomy that classifies educational aspects at three levels (uses, practices, and strategies) and then utilizes two frameworks, the Immersive Learning Brain and the Immersion Cube, to enable a structured description and interpretation of immersive learning cases. The method is then demonstrated on a published immersive learning case on training for wind turbine maintenance using virtual reality. Applying the method results in a structured artifact, the Immersive Learning Case Sheet, that tags the case with its proximal uses, practices, and strategies, and refines the free text case description to ensure that matching details are included. This contribution is thus a case description method in support of future comparative research of immersive learning cases. We then discuss how the resulting description and interpretation can be leveraged to change immersion learning cases, by enriching them (considering low-effort changes or additions) or innovating (exploring more challenging avenues of transformation). The method holds significant promise to support better-grounded research in immersive learning.
The binding of cosmological structures by massless topological defectsSérgio Sacani
Assuming spherical symmetry and weak field, it is shown that if one solves the Poisson equation or the Einstein field
equations sourced by a topological defect, i.e. a singularity of a very specific form, the result is a localized gravitational
field capable of driving flat rotation (i.e. Keplerian circular orbits at a constant speed for all radii) of test masses on a thin
spherical shell without any underlying mass. Moreover, a large-scale structure which exploits this solution by assembling
concentrically a number of such topological defects can establish a flat stellar or galactic rotation curve, and can also deflect
light in the same manner as an equipotential (isothermal) sphere. Thus, the need for dark matter or modified gravity theory is
mitigated, at least in part.
The debris of the ‘last major merger’ is dynamically youngSérgio Sacani
The Milky Way’s (MW) inner stellar halo contains an [Fe/H]-rich component with highly eccentric orbits, often referred to as the
‘last major merger.’ Hypotheses for the origin of this component include Gaia-Sausage/Enceladus (GSE), where the progenitor
collided with the MW proto-disc 8–11 Gyr ago, and the Virgo Radial Merger (VRM), where the progenitor collided with the
MW disc within the last 3 Gyr. These two scenarios make different predictions about observable structure in local phase space,
because the morphology of debris depends on how long it has had to phase mix. The recently identified phase-space folds in Gaia
DR3 have positive caustic velocities, making them fundamentally different than the phase-mixed chevrons found in simulations
at late times. Roughly 20 per cent of the stars in the prograde local stellar halo are associated with the observed caustics. Based
on a simple phase-mixing model, the observed number of caustics are consistent with a merger that occurred 1–2 Gyr ago.
We also compare the observed phase-space distribution to FIRE-2 Latte simulations of GSE-like mergers, using a quantitative
measurement of phase mixing (2D causticality). The observed local phase-space distribution best matches the simulated data
1–2 Gyr after collision, and certainly not later than 3 Gyr. This is further evidence that the progenitor of the ‘last major merger’
did not collide with the MW proto-disc at early times, as is thought for the GSE, but instead collided with the MW disc within
the last few Gyr, consistent with the body of work surrounding the VRM.
ESPP presentation to EU Waste Water Network, 4th June 2024 “EU policies driving nutrient removal and recycling
and the revised UWWTD (Urban Waste Water Treatment Directive)”
The cost of acquiring information by natural selectionCarl Bergstrom
This is a short talk that I gave at the Banff International Research Station workshop on Modeling and Theory in Population Biology. The idea is to try to understand how the burden of natural selection relates to the amount of information that selection puts into the genome.
It's based on the first part of this research paper:
The cost of information acquisition by natural selection
Ryan Seamus McGee, Olivia Kosterlitz, Artem Kaznatcheev, Benjamin Kerr, Carl T. Bergstrom
bioRxiv 2022.07.02.498577; doi: https://doi.org/10.1101/2022.07.02.498577
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
2. Assembly of
Viruses
INTRODUCTION
ASSEMBLY OF PROTEIN SHELL
SELECTIVE PACKAGING OF THE NUCLEIC ACID
GENOME
ACQUISITION OF AN ENVELOPE
RELEASE FROM THE HOST CELL
VIRION MATURATION
3. Virus assembly - key step in the replication cycle
Involves transportation of chemically distinct macromolecules through different pathways,
to a point within the cell where they are assembled into a nascent viral particle
Assembly of each virus should be at a defined point
within the cell
Assembly process include
Interactions between proteins of viral and cellular origin
Between viral proteins and nucleic acids and lipids
Between the viral proteins themselves
INTRODUCTION
Assembly of Viruses
4. Studies on virus assembly was first carried out by Heinz
Fraenkel-Conrat and Robley Williams in 1955
Tobacco Mosaic Virus (TMV)
Purified tobacco mosaic virus RNA and its protein coat can
assemble by themselves to form functional viruses
X-ray diffraction studies
HISTORY
Assembly of Viruses
1. Nucleic acid (RNA), 2. Capsomer protein (PROTOMER), 3. Capsid
5. Virion assembly can be studied by
Cryo Electron Microscopy
• Intracellular sites of assembly
• The nature of assembly intermediates
• Mechanism of envelope acquisition
• Release of particles
Difference imaging
• Combination of X-ray crystallography and Electron Microscopy
EM can be combined with Immunocytochemical methods
• Identification of individual viral proteins/ structures
• Binding of specific antibodies or attached to electron dense particles of
gold
STUDY OF VIRUS ASSEMBLY
Assembly of Viruses
6. ASSEMBLY OF VIRION COMPONENTS
Assembly of Viruses
CYTOPLASM / NUCLEUS
TIGHTLY ASSEMBLED
ICOSAHEDRAL SHELL
PREVENTS DEGRADATION
OF THE GENOME
NON
ENVELOPED
VIRUSES
MUST ACQUIRE A LIPID
BILAYER FROM ONE OF THE
CELL’S MEMBRANE DURING
THE PROCESS OF ASSEMBLY
INTEGRITY OF THE
NUCLEOCAPSID IS LESS
CRITICAL
ENVELOPED
VIRUSES
7. SITES OF VIRUS ASSEMBLY
Assembly of Viruses
ASSEMBLY OF VIRUSES
NUCLEUS
STRONG DEPENDENCE
ON NUCLEAR
TARGETING/TRANSPORT
PATHWAYS
ADENO, HERPES
ASSEMBLY OF VIRUSES
GOLGI COMPLEX
OLIGOSACCHARIDE
MATURATION IN GOLGI
COMPARTMENTS
BUNYA, HERPES, POX
ASSEMBLY OF VIRUSES
CYTOPLASM
ASSOCIATION WITH
MEMBRANES OF THE
SECRETORY OR
ENDOCYTIC PATHWAYS
REOVIRUSES, PICORNA
ASSEMBLY OF VIRUSES
PLASMA MEMBRANE
ASSEMBLED VIRUS
NAVIGATE
ADDITIONAL
COMPARTMENTS OF THE
SECRETORY PATHWAY
TOGA, RHABDO,
ORTHOMYXO,
PARAMYXO, RETRO
9. NUCLEAR IMPORT/ EXPORT AND SECRETORY PATHWAYS
OF NUCLEIC ACIDS AND PROTEINS
Assembly of Viruses
1
• THE NUCLEAR PORE
COMPLEX
2
• NUCLEAR LOCALIZATION
SIGNALS
3
• NUCLEAR TRANSPORT
PATHWAYS
1
• TRANSLOCATION
2
• POST TRANSCRIPTIONAL
MODIFICATIONS
3
• PROTEIN LOCALIZATION
NUCLEAR IMPORT/EXPORT PATHWAYS SECRETORY PATHWAY
10. • Provides a proteinaceous channel between the nucleus and cytosol
• Large structure, 50 mDa
• Constructed of multiple copies of approximately 30 different proteins called nucleoporins
(Nups)
• Small molecules and proteins may be able to passively diffuse through the NPC
• 3,000 NPCs on the nuclear envelope of an animal cell
NUCLEAR PORE COMPLEX
Assembly of Viruses
11. • Proteins that are actively transported into or out
of the nucleus are characterized by the presence
of amino acid motifs
• For import into the nucleus, these motifs are termed
nuclear localization signals (NLS)
• Generally short (<20 amino acids)
• For export, nuclear export signals (NES)
• Nuclear transport signal is also short (10 amino acids)
• HIV-1 possess both an NLS and an NES and appear to shuttle back and forth between the
cytoplasm and the nucleus
NUCLEAR LOCALIZATION SIGNALS
Assembly of Viruses
12. NUCLEAR IMPORT
Newly synthesized NLS-containing protein interacts with
cytosolic receptor proteins
This complex is then translocated, in an energy-
independent process, through the nuclear pore into
the nucleus
Best-characterized protein import receptor is importin-a
(karyopherin-a)
NUCLEAR EXPORT
Exportins interact with their substrates only in the
nucleus in the presence of RanGTP
NUCLEAR IMPORT/EXPORT PATHWAY
Assembly of Viruses
13. Adenoviruses
Non-enveloped icosahedral viruses
Capsid is composed of 252 capsomeres, of which 240 are hexons and 12 are pentons
Replicates exclusively in the nucleus
Depend on nuclear targeting/transport pathways to export newly synthesized mRNAs out
of the nucleus and to import structural proteins back into the nucleus
Nuclear import of the major capsid protein (hexon or polypeptide II) depends on the pVI
(precursor) polypeptide
Trimer formation, depends upon chaperone-like protein- L4 (100kDa)
L4-binds to the newly synthesized hexon monomer and mediates its association with
two additional monomers
Precursor core proteins would be packaged into the empty capsid along with the genome to
form immature virions
Proteolytic cleavage of the precursor proteins by the viral proteinase yields the mature virion
ASSEMBLY OF NON-ENVELOPED VIRUSES IN THE NUCLEUS
Assembly of Viruses
15. ASSEMBLY OF ENVELOPED VIRUSES IN THE NUCLEUS
Assembly of Viruses
Herpesviruses
Capsid is icosahedral; 162 capsomers
Assembled in the infected cell nucleus
Basic assembly unit is a complex of the major capsid and
scaffolding proteins
MAJOR CAPSID
SCAFFOLDING
PROTEINS
PROCAPSID
ds DNA GENOME PACKAGED
RELEASE OF
SCAFFOLDING
PROTEINS
18. Reoviruses
Segmented double-stranded RNA genome
Protein capsid is organized as one, two, or three concentric capsid layers, which surround the
dsRNA segments of the viral genome
Outer capsid mediates viral entry to the host cell cytoplasm ( Outer capsid proteins : σ1, σ3, μ1, λ2)
Outer capsid protein sigma1 forms trimers that extend from the fivefold axes of virions and mediates viral
attachment to cellular receptors
Another protein λ2 forms pentameric turrets that surround the fivefold axes and bridge the inner and outer
capsids
λ2 is involved in viral mRNA synthesis and assembly of the outer capsid onto virus particles
Reoviruses are the only animal viruses that appear to complete their assembly entirely in the cytoplasm
without the involvement of membranes
ASSEMBLY OF VIRUSES IN CYTOPLASM
21. Picornaviruses
Non -enveloped, icosahedral symmetry
Consisting of a protein shell surrounding
the naked RNA genome
Capsids of picornaviruses are composed
of four structural proteins: VP4, VP2, VP3,
and VP1
Viral proteins are synthesized from
a polyprotein precursor, which is cleaved
nascently
Processing of picornavirus polyprotein
Maturational cleavage of VP0 to VP2
and VP4
ASSEMBLY OF VIRUSES IN CYTOPLASM
24. Bunyaviruses
Negative-stranded, enveloped viruses; segmented genome
Assembles in tube-like virus factories that are built around the Golgi complex and are connected to
mitochondria and rough ER
These factories appear to allow accumulation of RNPs that can associate with viral glycoproteins (Gn and
Gc) and bud into the lumen of swollen Golgi stacks
Gn and Gc form a Gn-Gc heterodimer that is transported to the Golgi complex
ASSEMBLY IN THE GOLGI COMPLEX
Gc Gn
HELICAL
NUCLEOPROTEINS
( 3 segments)
NUCLEOCAPSID
(N) PROTEIN
ACCUMULATE
IN THE GOLGI COMPONENT OF
THE VIRUS FACTORIES
25. Poxviruses
Linear double-stranded DNA genome
Enveloped viruses
Assembly begins with the formation of crescents by diversion of membrane from the endoplasmic
reticulum
Mature virion is released from the infected cell only upon lysis
Acquire additional membranes by wrapping ( derived from a late or post -Golgi compartments to form the
wrapped virions ) known as Intracellular Enveloped Virus (IEV)
ASSEMBLY IN THE GOLGI COMPLEX
Virus particle
(IEV)
Cellular membrane
ACTIN TAILS
28. Togaviruses
Single-stranded, positive sense RNA
Enveloped; Icosahedral symmetry
Best studied in Alphaviruses
The major glycoproteins E1 and E2 of the Alphaviruses are translated from a
subgenomic 26S RNA as a pE2, 6K, E1 precursor complex
The 6K and E1 proteins are released from the precursor by signal peptidase but remain in a complex with
pE2
Following transport to the Golgi, pE2 is processed to E2 and E3.
Stable trimers of E1-E2 heterodimers are then transported to the plasma membrane, where they associate
with nucleocapsids
The 6K protein travels to the plasma membrane with the E1-E2 complex but is inefficiently incorporated into
virions
Cryo-electron microscopy analyses of mature alphavirus particles have revealed that both the
envelope and the core display icosahedral symmetry.
ASSEMBLY OF TOGAVIRUSES
31. Rhabdoviruses
Minus sense ssRNA genome bound to nucleoprotein
Helical nucleocapsid ; Bullet shape
Entire nucleocapsid is enclosed in a mono-molecular layer of the matrix protein, M
Assembles by budding at the host cell cytoplasmic membrane
Assembly is initiated by interaction of the nucleocapsid with a specialized region of membrane containing M
and G proteins
Matrix protein and the membrane binds to the nucleocapsid progressively creating helical turns beginning
at the domed virion end
As helical turns are created, the overall structure projects progressively further outward from the host cell
Assembly is terminated with formation of the blunt end and detachment of the complete virion from
the host cell
ASSEMBLY OF RHABDOVIRUSES
33. Paramyxoviruses are spherical, pleomorphic / filamentous forms
Single stranded RNA genomes of negative polarity
Glycoprotein spikes extend from the surface of the membrane
Nucleocapsids assemble in the cytoplasm in two steps:
Paramyxoviriuses bud only from the apical surface
ASSEMBLY OF PARAMYXOVIRUSES
Assembly of
nucleocapsid
Association of free
N subunits with the
genome or template
RNA to form the
helical RNP
structure
Assembly of
nucleocapsid
Association of
the PL
complex
35. INFLUENZA VIRUS
Enveloped virus; segmented negative strand RNA genome
Assembly and budding complex, multistep process that occurs
in lipid raft domains on the apical membrane of infected cells
The spike glycoproteins
Hemagglutinin (HA) :mediates viral entry into cells and has
receptor binding and membrane fusion activity
Neuraminidase (NA) : NA mediates enzymatic cleavage of the viral receptor
Integral membrane protein (M2): multi-functional, proton-selective, ion
channel which has roles both in virus entry as well as in assembly and budding
(Rossman and Lamb, 2011)
ASSEMBLY OF ORTHOMYXOVIRUSES
36. ASSEMBLY OF ORTHOMYXOVIRUSES
Virus replication
Newly formed RNP
Assembled in
nucleus
Exported to
cytoplasm
Matrix protein (M1) Nuclear export
protein (NEP/NS2)
Viruses assemble and bud
from the apical plasma
membrane of polarized cells
38. Retroviruses are enveloped viruses
Assembly by budding through the plasma membrane of the infected cell
The immature capsid of the virus is assembled from polyprotein precursors
The gag protein of all retroviruses contains the MA, CA and NC proteins linked by
spacer peptides that are variable in length and position.
The association of gag molecules with the plasma membrane with one another and
with the RNA genome initiates assembly at the inner surface of the plasma membrane
Betaretroviruses, complete assembly of their core in the interior of the cell prior
to its association with the plasma membrane
Cleavage of Gag and Gag-Pol proteins by the viral protease (PR) produces
infectious particles
ASSEMBLY OF RETROVIRUSES
40. MECHANISM OF ASSEMBLY OF THE STRUCTURAL UNITS
OF PROTEIN SHELLS
1
• ASSEMBLY FROM INDIVIDUAL PROTEIN
MOLECULES
2
• ASSEMBLY FROM A POLYPROTEIN
PRECURSOR
3
• CHAPERONE-ASSISTED ASSEMBLY
41. ASSEMBLY FROM INDIVIDUAL PROTEIN MOLECULES
Mechanism Virus Structural unit
Association of individual
protein molecules
Adenovirus (adenovirus type 2) Protein IV trimer (fiber) and
protein III pentamer (penton
base) that
forms pentons
Hepadnavirus (hepatitis B virus) C (capsid) protein dimers
Papovavirus (simian virus 40) VP1 pentamer, with one molecule
of VP2 or VP1 in its central cavity
Reovirus (reovirus type 1) λ, σ2 (inner capsid protein)
homo-oligomers; σ3-μ, (outer
capsid protein) hetero-oligomers
43. ASSEMBLY FROM A POLYPROTEIN PRECURSOR
Mechanism Virus Structural unit
Assembly from polyprotein
precursors
Alphavirus (Sindbis virus) Capsid (C) protein folds in, and
cleaves itself from, a nascent
polyprotein also containing
glycoprotein sequences
Picornavirus (poliovirus) Immature 5S structural units,
VP0-VP3-VP1
Retrovirus (avian sarcoma virus) NC, CA, and MA protein shells
assembled via Gag polyprotein
45. CHAPERONE-ASSISTED ASSEMBLY
Assembly of viral proteins into structural units is assisted by cellular chaperons
Facilitate protein folding by preventing non-specific, improper association among exposed, sticky
patches on nascent and newly synthesized proteins
First chaperone to be identified – the product of E. coli gro EL gene; essential for reproduction of
bacteriophage T4 and lambda
Adenoviral L4 100-kDa protein, which is required for formation of the hexon trimer from the protein II
monomer
47. ACQUISITION OF AN ENVELOPE
Enveloped viruses assemble by virtue of specific interactions among virion components at a cellular
membrane before budding and pinching off of a new virus particle
Enveloped viruses assemble by one of two mechanisms :
A. Sequential Assembly of Internal
Components and Budding from a Cellular
Membrane
The assembly of internal structures of the virion
and their interaction with a cellular membrane
Modified by insertion of viral proteins are spatially
and temporally separated
Exemplified by (−) strand RNA viruses
Influenza viruses
B. Coordination of the Assembly of Internal
Structures with the Acquisition of the
Envelope
Assembling cores of the majority first appear
as crescent-shaped patches at the inner surface
of the plasma membrane
Extend to form a closed sphere as the plasma
membrane wraps around and eventually pinches
off the assembling particle
Retroviruses
48. MATURATION OF PROGENY VIRUS
Virus-encoded proteolytic enzymes – helps in process of assembly and post assembly maturation of viruses
Proteolytic cleavage in Alphaviruses- allow protein domains to enter different pathways
In Herpesviruses, proteolytic cleavage of the scaffolding protein occurs after assembly of the procapsid
is complete and is a prerequisite for DNA packaging
Cleavage of the P1 precursor of Picornaviruses appears to be a prerequisite for entry of the capsid proteins
into the assembly pathway
Cleavage of the Gag precursors in the immature capsid of Retroviruses help in maturation of the virions
PROTEOLYTIC
PROCESSING OF
VIRION PROTEINS
RETROVIRUSES
A.
CLEAVAGE OF
POLYPROTEINS
PICORNAVIRUSES
SPUMARETROVIRUSES
B.
CLEAVAGE OF
PRECURSOR
PROTEINS
C.
ADENOVIRUES
49. RELEASE OF NASCENT PARTICLES
Non
enveloped
viruses
Lysis of infected
cell
Except
Picornaviruses
and
Polioviruses
Enveloped
viruses
Bud growth
Bud formation
Fusion of the
bud membrane