The synaptic order: a key concept  to understand multicenter bonding Bernard Silvi Laboratoire de Chimie Théorique Université Pierre et Marie Curie 4, place Jussieu 75252 -Paris
Multicenter bond An apparently odd concept for the chemist bonds are represented by lines between symbols Not accounted for by the valence concept bonds are characterized by: bond lengths bond energies Energy decomposition atom-atom pair potential Axilrod-Teller term is very weak Not in Lewis’s theory original cubic atoms Not in Pauling’s textbook but in Coulson’s
Origins of the concept The diborane problem or classical Hydrogen bridges (Dilthey 1921) in contradiction with boron valence and electron count
Answer given by spectroscopy high barrier to internal rotation (Stitt 1940) infrared spectrum (Price 1947) Electronic structure proposals K shell binding (Hellriegel 1930) resonance structures (Nekrassov 1940, Syrkin and Dyatkina 1941, Seel 1945)
The protonated double bond (Pitzer 1945)  MO representation (Longuet-Higgins 1949)
Generalisation:  3c-2e  bond In B 2 H 6
Generalisation:  3c-2e  bond B-B-B bonds
Generalisation:  3c-4e  bonds F-Xe-F
Strengths and weaknesses Acknowledged model in boron chemistry Lipscomb’s works predictive tool Interpretation of the numerical procedure chemical meaning given to the wave function depends of the expansion basis non invariance of the MO’s
Bonds and related concepts Bonds are not quantum mechanical observables They belong to an other (chemical) level of understanding Definitions often lack precision Is a three-center bond a bond?
Chemical concepts related to bonding Describe molecules and solids in terms of bonds, lone pairs, etc... Bonds are links between atoms According to Lewis a bond is made of an electron pair The octet rule should be satisfied  According to chemistry bonds are classified as:  Covalent, polar, dative, metallic, ionic The VSEPR model enables to predict molecular geometry These concepts ratonalize the stoichiometry and the molecular structure The approach of Chemistry has been and still is very successful
Il me faut cependant avouer que la chimie proprement dite ne m’a jamais beaucoup intéressé. Pourquoi ? Peut être parce que des notions telles que celles de valence, de liaison chimique  etc., m’ont toujours semblé peu claires du point de vue conceptuel.    René Thom Paraboles et catastrophes However I have to confess that I have never been very interested in Chemistry Why? Maybe because notions such as those of valence, chemical bond, etc., seem to me unclear from a conceptual point of view
What should be a theory of the chemical bond Investigate the local properties of matter with a well suited mathematical theory mathematics reveal relationships and behaviours which are the consequence of the intelligibility of the Nature mapping chemical concepts with mathematical objects should improve their definitions and enable to introduce new concepts isomorphism provides the mathematical model
The starting point Statistical interpretation of Quantum Mechanics epistemologically valid provides a bridge between microscopic and classical worlds position space representation pioneered by Daudel with the Loge theory hampered by numerical complexity what to do after?
Topological theories of bonding Purpose: provide rigorous qualitative information: mathematical model of Lewis’s theory Non ambiguous definitions of bonds Mathematical background: dynamical system theory Achievements: AIM (R. Bader)
Gradient dynamical system bound on   3 vector field  X =  V ( r ) V( r ) potential function defined and differenciable for all  r the analogy with a velocity field  X =d r /dt enables to build trajectories moreover V( r ) depends upon a set of parameters {  i } called the control space, i.e.: V( r ;{  i }) Some definitions
Critical points index: number of positive eigenvalues of the second derivative matrix (hessian) hyperbolic critical point: all eigenvalues are non zero stable manifold basin: stable manifold of critical point of index 0 separatrix: stable manifold of a critical point of index >0 Poincaré-Hopf relation structural stability: condition: all the critical points are hyperbolic More definitions....
A meteorological example:  V( r {  i })=-P Basin 2 Basin 1
Domains Definition  That’s all with maths  a b
Atoms  In Molecules theory Bond path unstable  manifold  of  an index 1  critical  point bond  critical  point only 2 centre bonds are possible
Back to bonding theory Lewis theory is based on the electron pair concept, therefore the potential function should be related to pair densities and to probe the efficiency of the Pauli principle localization function   ( r ;  i ) ELF  (Becke and Edgecombe 1990) has been elected by our community cf:  Workshop “ Content and interpretation of  ELF  and related functions ”   Dresden, june   2001
What is  ELF ? Taylor expansion of the spherically averaged conditional pair probability:  Physical scaling by the homogeneous electron gas Cosmetic scaling to confine  ELF  in the 0-1 range Can be determined from experimental densities
Analysis: classification of basins Core and valence basins Nomenclature  C(A) core V(A, ..) valence color code  Graphical representation: isosurfaces of the function V(O) C(C) C(O) V(C, H) V(O, H) V(C, O)
Analysis of localization domains : Bounded by the isosurface   (r)=f  reducible and irreducible domains core-valence separation Localization domains   (r cv ) hierarchy of basins: bifurcation diagram parent  domain cores valence S  lone   pairs bond
Detailed diagram: Parent   domain C(O ) valence C(S) V(S) Valence   O V(S,O ) V 1 (O)+V 2 (O) V 1 (O) V 2 (0)
Hierarchy   of localization domains: complex Valence-valence separation    (r vv ) Ex: FH CO 2 Parent  domain HF CO2 valence C(F) C(O) valence C(O) ,  V(C,O) V(O)
Hierarchy   of localization domains: ionic pair Core-valence separation    (r cv ) Ex: LiF Parent domain C(Li) F C(F) V(F)
The two processes filled-filled: 2 chemical single chemical objects (or more) complex, ionic pair, physisorption hollowed-filled: 1 chemical single chemical object molecule, ion, chemisorption
The synaptic order  The synaptic order    of a valence basin or of a group of valence basins ( cwm)  is the number of cores  belonging to the same single chemical object  with which it shares a boundary (separatrix) proton counted 1 complementary of the valence concept
Synaptic order: CH 3 F mon osynaptic disynaptic Protonated disynaptic
Synaptic order and chemical reactions Covalent bond breaking: C 2 H 6
Synaptic order and chemical reactions Dative bond breaking: BH 3 NH 3
3c-2e  multicenter bond Protonated bonds: B 2 H 6 Protonated trisynaptic
3c-2e  multicenter bond B-B-B bonds: B 4 H 4
3c-2e  multicenter bond Agostic hydrogen: RuClCH  3 CH 2 (PH 3 )
3c-2e  multicenter bond Agostic protonation 0.223 0.235
3c-2e  bonds: high coordination of C Pentacoordinated sp 3 : Al 2 H 4 (CH 3 ) 2
Planar tetracoordinated carbons R. Choukroun, B. Donnadieu, J-S. Zhao, P. Cassoux, C. Lepetit et B. Silvi ,  Organometallics , 19,  1901-1911 (2000)
Planar pentacoordinated carbon P. v. R. Schleyer, private communication
Planar hexacoordinated carbon P. v. R. Schleyer, private communication
Metallic bond Metal cluster:Li 6
Metallic bond Bcc structures
Metallic bond Fcc structures
Metallic bond Electron-phonon interaction?
3c-4e  multicenter bonds Hypervalent molecules: XeF 2
Conclusions The topological analysis of  ELF  provides unambiguous position space definition of multicenter bonding 3c-2e  bonds are true multicenter bonds 3c-4e  bonds are not multicenter bonds The synaptic order of a basin is a good descriptor It is complementary of the valence concept However, the choice of the localization function remains an open problem
Nevertheless… Many forms of localization functions have been tried, and will be tried in this world of sin and woe. No one pretends that  ELF  is perfect or all-wise. Indeed, it has been the worst form of localization function except all those others that have been tried from time to time. Many forms of government have been tried, and will be tried in this world of sin and woe. No one pretends that democracy is perfect or all-wise. Indeed, it has been the worst form of government except all those others that have been tried from time to time. W. Churchill
Acknowledgements Laboratoire de Chimie Théorique (Paris): H. Chevreau,  F. Colonna, H. Demirdjian, I. Fourré, F. Fuster, H. Gérard,   C. Giessner-Prettre, A. Hénoux, L. Joubert, X. Krokidis,  S. Noury, J. Pilme, A. Savin, A. Sevin Laboratoire de Spectrochimie Moléculaire (Paris):  E. A. Alikhani Departament de Ciències Experimentals (Castelló):  J. Andrés, A. Beltrán, M. Calatayud, M. Feliz, R. Llusar Université de Wroclaw: S. Berski, Z. Latajka Centro per lo Studio delle Relazioni tra Struttura e Reattività Chimica CNR (Milan): C. Gatti Laboratoire de Chimie de Coordination (Toulouse):  C. Lepetit Universitad de Oviedo: J. M. Recio, P. Mori Sanchez University of Helsinki: J. Lundell, M. Sundberg McMaster University: R. G. Gillespie
That's all folks
Is a 3-center bond a bond? Rely on the definition of the bond A bond is not an observable It belongs to Chemistry Lewis’s definition Pauling’s definition Daudel’s definition: a chemical bond can be considered to be a part of space in which the fluctuation of the number of electrons is small and the correlation between them is high
Nevertheless… Many forms of localization functions have been tried, and will be tried in this world of sin and woe. No one pretends that  ELF  is perfect or all-wise. Indeed, it has been the worst form of localization function except all those others that have been tried from time to time. Many forms of government have been tried, and will be tried in this world of sin and woe. No one pretends that democracy is perfect or all-wise. Indeed, it has been the worst form of government except all those others that have been tried from time to time. W. Churchill
Integrated conditional probability (Dobson and Savin) Six come three Limit for q  0

The synaptic order a key concept to understand multicenter bonding synaptic

  • 1.
    The synaptic order:a key concept to understand multicenter bonding Bernard Silvi Laboratoire de Chimie Théorique Université Pierre et Marie Curie 4, place Jussieu 75252 -Paris
  • 2.
    Multicenter bond Anapparently odd concept for the chemist bonds are represented by lines between symbols Not accounted for by the valence concept bonds are characterized by: bond lengths bond energies Energy decomposition atom-atom pair potential Axilrod-Teller term is very weak Not in Lewis’s theory original cubic atoms Not in Pauling’s textbook but in Coulson’s
  • 3.
    Origins of theconcept The diborane problem or classical Hydrogen bridges (Dilthey 1921) in contradiction with boron valence and electron count
  • 4.
    Answer given byspectroscopy high barrier to internal rotation (Stitt 1940) infrared spectrum (Price 1947) Electronic structure proposals K shell binding (Hellriegel 1930) resonance structures (Nekrassov 1940, Syrkin and Dyatkina 1941, Seel 1945)
  • 5.
    The protonated doublebond (Pitzer 1945) MO representation (Longuet-Higgins 1949)
  • 6.
    Generalisation: 3c-2e bond In B 2 H 6
  • 7.
    Generalisation: 3c-2e bond B-B-B bonds
  • 8.
    Generalisation: 3c-4e bonds F-Xe-F
  • 9.
    Strengths and weaknessesAcknowledged model in boron chemistry Lipscomb’s works predictive tool Interpretation of the numerical procedure chemical meaning given to the wave function depends of the expansion basis non invariance of the MO’s
  • 10.
    Bonds and relatedconcepts Bonds are not quantum mechanical observables They belong to an other (chemical) level of understanding Definitions often lack precision Is a three-center bond a bond?
  • 11.
    Chemical concepts relatedto bonding Describe molecules and solids in terms of bonds, lone pairs, etc... Bonds are links between atoms According to Lewis a bond is made of an electron pair The octet rule should be satisfied According to chemistry bonds are classified as: Covalent, polar, dative, metallic, ionic The VSEPR model enables to predict molecular geometry These concepts ratonalize the stoichiometry and the molecular structure The approach of Chemistry has been and still is very successful
  • 12.
    Il me fautcependant avouer que la chimie proprement dite ne m’a jamais beaucoup intéressé. Pourquoi ? Peut être parce que des notions telles que celles de valence, de liaison chimique etc., m’ont toujours semblé peu claires du point de vue conceptuel. René Thom Paraboles et catastrophes However I have to confess that I have never been very interested in Chemistry Why? Maybe because notions such as those of valence, chemical bond, etc., seem to me unclear from a conceptual point of view
  • 13.
    What should bea theory of the chemical bond Investigate the local properties of matter with a well suited mathematical theory mathematics reveal relationships and behaviours which are the consequence of the intelligibility of the Nature mapping chemical concepts with mathematical objects should improve their definitions and enable to introduce new concepts isomorphism provides the mathematical model
  • 14.
    The starting pointStatistical interpretation of Quantum Mechanics epistemologically valid provides a bridge between microscopic and classical worlds position space representation pioneered by Daudel with the Loge theory hampered by numerical complexity what to do after?
  • 15.
    Topological theories ofbonding Purpose: provide rigorous qualitative information: mathematical model of Lewis’s theory Non ambiguous definitions of bonds Mathematical background: dynamical system theory Achievements: AIM (R. Bader)
  • 16.
    Gradient dynamical systembound on  3 vector field X =  V ( r ) V( r ) potential function defined and differenciable for all r the analogy with a velocity field X =d r /dt enables to build trajectories moreover V( r ) depends upon a set of parameters {  i } called the control space, i.e.: V( r ;{  i }) Some definitions
  • 17.
    Critical points index:number of positive eigenvalues of the second derivative matrix (hessian) hyperbolic critical point: all eigenvalues are non zero stable manifold basin: stable manifold of critical point of index 0 separatrix: stable manifold of a critical point of index >0 Poincaré-Hopf relation structural stability: condition: all the critical points are hyperbolic More definitions....
  • 18.
    A meteorological example: V( r {  i })=-P Basin 2 Basin 1
  • 19.
    Domains Definition That’s all with maths a b
  • 20.
    Atoms InMolecules theory Bond path unstable manifold of an index 1 critical point bond critical point only 2 centre bonds are possible
  • 21.
    Back to bondingtheory Lewis theory is based on the electron pair concept, therefore the potential function should be related to pair densities and to probe the efficiency of the Pauli principle localization function  ( r ;  i ) ELF (Becke and Edgecombe 1990) has been elected by our community cf: Workshop “ Content and interpretation of ELF and related functions ” Dresden, june 2001
  • 22.
    What is ELF ? Taylor expansion of the spherically averaged conditional pair probability: Physical scaling by the homogeneous electron gas Cosmetic scaling to confine ELF in the 0-1 range Can be determined from experimental densities
  • 23.
    Analysis: classification ofbasins Core and valence basins Nomenclature C(A) core V(A, ..) valence color code Graphical representation: isosurfaces of the function V(O) C(C) C(O) V(C, H) V(O, H) V(C, O)
  • 24.
    Analysis of localizationdomains : Bounded by the isosurface  (r)=f reducible and irreducible domains core-valence separation Localization domains  (r cv ) hierarchy of basins: bifurcation diagram parent domain cores valence S  lone pairs bond
  • 25.
    Detailed diagram: Parent domain C(O ) valence C(S) V(S) Valence O V(S,O ) V 1 (O)+V 2 (O) V 1 (O) V 2 (0)
  • 26.
    Hierarchy of localization domains: complex Valence-valence separation  (r vv ) Ex: FH CO 2 Parent domain HF CO2 valence C(F) C(O) valence C(O) , V(C,O) V(O)
  • 27.
    Hierarchy of localization domains: ionic pair Core-valence separation  (r cv ) Ex: LiF Parent domain C(Li) F C(F) V(F)
  • 28.
    The two processesfilled-filled: 2 chemical single chemical objects (or more) complex, ionic pair, physisorption hollowed-filled: 1 chemical single chemical object molecule, ion, chemisorption
  • 29.
    The synaptic order The synaptic order  of a valence basin or of a group of valence basins ( cwm) is the number of cores belonging to the same single chemical object with which it shares a boundary (separatrix) proton counted 1 complementary of the valence concept
  • 30.
    Synaptic order: CH3 F mon osynaptic disynaptic Protonated disynaptic
  • 31.
    Synaptic order andchemical reactions Covalent bond breaking: C 2 H 6
  • 32.
    Synaptic order andchemical reactions Dative bond breaking: BH 3 NH 3
  • 33.
    3c-2e multicenterbond Protonated bonds: B 2 H 6 Protonated trisynaptic
  • 34.
    3c-2e multicenterbond B-B-B bonds: B 4 H 4
  • 35.
    3c-2e multicenterbond Agostic hydrogen: RuClCH 3 CH 2 (PH 3 )
  • 36.
    3c-2e multicenterbond Agostic protonation 0.223 0.235
  • 37.
    3c-2e bonds:high coordination of C Pentacoordinated sp 3 : Al 2 H 4 (CH 3 ) 2
  • 38.
    Planar tetracoordinated carbonsR. Choukroun, B. Donnadieu, J-S. Zhao, P. Cassoux, C. Lepetit et B. Silvi , Organometallics , 19, 1901-1911 (2000)
  • 39.
    Planar pentacoordinated carbonP. v. R. Schleyer, private communication
  • 40.
    Planar hexacoordinated carbonP. v. R. Schleyer, private communication
  • 41.
    Metallic bond Metalcluster:Li 6
  • 42.
  • 43.
  • 44.
  • 45.
    3c-4e multicenterbonds Hypervalent molecules: XeF 2
  • 46.
    Conclusions The topologicalanalysis of ELF provides unambiguous position space definition of multicenter bonding 3c-2e bonds are true multicenter bonds 3c-4e bonds are not multicenter bonds The synaptic order of a basin is a good descriptor It is complementary of the valence concept However, the choice of the localization function remains an open problem
  • 47.
    Nevertheless… Many formsof localization functions have been tried, and will be tried in this world of sin and woe. No one pretends that ELF is perfect or all-wise. Indeed, it has been the worst form of localization function except all those others that have been tried from time to time. Many forms of government have been tried, and will be tried in this world of sin and woe. No one pretends that democracy is perfect or all-wise. Indeed, it has been the worst form of government except all those others that have been tried from time to time. W. Churchill
  • 48.
    Acknowledgements Laboratoire deChimie Théorique (Paris): H. Chevreau, F. Colonna, H. Demirdjian, I. Fourré, F. Fuster, H. Gérard, C. Giessner-Prettre, A. Hénoux, L. Joubert, X. Krokidis, S. Noury, J. Pilme, A. Savin, A. Sevin Laboratoire de Spectrochimie Moléculaire (Paris): E. A. Alikhani Departament de Ciències Experimentals (Castelló): J. Andrés, A. Beltrán, M. Calatayud, M. Feliz, R. Llusar Université de Wroclaw: S. Berski, Z. Latajka Centro per lo Studio delle Relazioni tra Struttura e Reattività Chimica CNR (Milan): C. Gatti Laboratoire de Chimie de Coordination (Toulouse): C. Lepetit Universitad de Oviedo: J. M. Recio, P. Mori Sanchez University of Helsinki: J. Lundell, M. Sundberg McMaster University: R. G. Gillespie
  • 49.
  • 50.
    Is a 3-centerbond a bond? Rely on the definition of the bond A bond is not an observable It belongs to Chemistry Lewis’s definition Pauling’s definition Daudel’s definition: a chemical bond can be considered to be a part of space in which the fluctuation of the number of electrons is small and the correlation between them is high
  • 51.
    Nevertheless… Many formsof localization functions have been tried, and will be tried in this world of sin and woe. No one pretends that ELF is perfect or all-wise. Indeed, it has been the worst form of localization function except all those others that have been tried from time to time. Many forms of government have been tried, and will be tried in this world of sin and woe. No one pretends that democracy is perfect or all-wise. Indeed, it has been the worst form of government except all those others that have been tried from time to time. W. Churchill
  • 52.
    Integrated conditional probability(Dobson and Savin) Six come three Limit for q  0