This presentation describes the structure and function of telomeres ,their role in various disease.The structure and function of telomerase is also described ,together with its possible role in therapy .
It describes about Structure and function of telomere, Telomerase enzyme, How does telomerase works?, Telomere replication, What happens to telomeres as we age?, Factors contribute to telomere shortening
This presentation deals with DNA replication in mamalian mitochondria. Mammalian mtDNA is replicated by proteins distinct from those used for nuclear DNA replication. According to the strand displacement model, replication is initiated from two distinct origins, OH and OL.
This presentation describes the structure and function of telomeres ,their role in various disease.The structure and function of telomerase is also described ,together with its possible role in therapy .
It describes about Structure and function of telomere, Telomerase enzyme, How does telomerase works?, Telomere replication, What happens to telomeres as we age?, Factors contribute to telomere shortening
This presentation deals with DNA replication in mamalian mitochondria. Mammalian mtDNA is replicated by proteins distinct from those used for nuclear DNA replication. According to the strand displacement model, replication is initiated from two distinct origins, OH and OL.
Transcription definition
steps of transcription
general structure of gene
RNA polymerase structure
Transcription in prokaryotes in detail (initiation, elongation and termination)
Structure and function of Messenger RNA (mRNA )ICHHA PURAK
This presentation of 42 slides delivers information about structure,function synthesis , life span of both prokaryotic and eukaryotic messenger RNA also about role in protein sorting and targetting
Transcription definition
steps of transcription
general structure of gene
RNA polymerase structure
Transcription in prokaryotes in detail (initiation, elongation and termination)
Structure and function of Messenger RNA (mRNA )ICHHA PURAK
This presentation of 42 slides delivers information about structure,function synthesis , life span of both prokaryotic and eukaryotic messenger RNA also about role in protein sorting and targetting
Telomere is the end part of a chromosome.its length is maintained by na enzyme called telomerase.if telomerase is lacking,many genetic diseases may result( like progeria)
Telomere is the end part of the eukaryotic chromosomes and they need special way to replicate theirselves because of regular DNA replication can’t replicate the ends of eukaryotic chromosomes.
Telomere, Functions & Role in Aging & CancerZohaib HUSSAIN
Why senescence occurs in eukaryotic organisms?
The major function of telomere is to cap the ends of chromosomes and protect the chromosomes from RED mechanism. As cells divide, telomeres continuously shorten with each successive cell division. Telomerase provides the necessary enzymatic activity to restore and maintain the telomere length. The vast majority of tumour's activate telomerase , and only few maintain telomeres by ALT mechanism relying on recombination. Telomere and telomerase are the attractive targets for anti-cancer therapeutics
The process of DNA replication creates a particular problem for repl.pdfahntagencies
The process of DNA replication creates a particular problem for replicating the ends of linear
chromosomes.
1. Describe why the DNA replication machinery has difficulty replicating DNA ends.
2. Telomerase has been identified as an enzyme that can reverse the outcome of end replication.
Describe the near-universal mammalian chromosome telomere sequence and how telomerase
solves the problem of end replication.
Solution
Answer:
1. Describe why DNA replication machinery has difficulty replicating DNA ends:
Eukaryotic chromosomes are linear and not circular like bacterial chromosomes. The end of
eukaryotic chromosomes contains repetitive sequences (telomere) and cannot be fully copied
during each round of replication. DNA replication begins by unwinding of DNA double helix
and the synthesis of new strand by DNA polymerase. Since DNA polymerase can only work in a
unidirectional way (5’ to 3’) therefore one of the two new strands of DNA is synthesized
continuously (leading strand) and the other strand is synthesized in small stretches called as
Okazaki fragments (lagging strand). At the end of the lagging strand, since it is not possible to
attach an RNA primer, thererfore, the terminal region of chromosomes does not get covered by
Okazaki fragments. As a result, with each round of replication, the terminal chromosome
sequence cannot be copied leaving single stranded overhangs and gradual shortening of
chromosomes. This is called as “end replication problem”.
2. Describe Near Universal mammalian chromosome telomere sequence and how telomerase
solves the problem of end replication:
The termini of eukaryotic chromosome have specialized DNA caps called telomere which
comprise of short repetitive DNA sequence. Each time a cell divides some portion of the
telomere is lost.
Mammalian Telomere contains hundreds or thousands of tandem repeats of the same short DNA
sequence 5’-TTAGGG-3’. With each cell division telomeric sequence are lost thereby
protecting the critical chromosomal regions that contains gene.Telomerase (telomere terminal
transferase) is an RNA dependent DNA polymerase made up of RNA subunits and protein and is
involved in elongating the length of chromosome by extending the telomeres. Telomerase
enzyme binds to a special RNA molecule that contains a sequence complementary to the
telomeric repeat. By using the complementary RNA as a template, it extends the overhanging
strand of the telomere DNA. Since DNA polymerase cannot replicate the DNA sequence at the
end of the chromosomes therefore telomerase enzyme aids in terminal replication process by
attaching to the end of the chromosome. Absence of telomerase activity would result in
progressive shortening of chromosome with each cell division..
What is the consequence when a chromosome loses its telomeresSol.pdfarchiesgallery
What is the consequence when a chromosome loses its telomeres?
Solution
Telomeres are DNA-protein complexes that contain short repeat sequences added on to the ends
of chromosomes by the enzyme telomerase. Telomeres serve multiple functions, including
protecting the ends of chromosomes and preventing chromosome fusion. In humans, telomeres
are thought to be maintained in germ line cells, but shorten with age in somatic cells due to the
lack of sufficient telomerase activity to compensate for the loss of small amounts of telomeric
repeat sequences with each cell division. Telomere shortening in somatic cells is a signal for cell
senescence, which involves a permanent cell cycle arrest in G1. Primary human fibroblasts that
have lost the ability to senesce continue to show telomere shortening and eventually enter
“crisis”, which involves increased chromosome fusion, aneuploidy, and cell death.
Usually loss of a telomere is associated with extensive chromosome fusion which can be
associated in human epithelial cells failing to senesce and thus entering “agonescence\". Rare
cells that survive crisis are invariably those that have regained the ability to maintain their
telomeres, either through activation of telomerase or through an alternative mechanism involving
recombination.
Spontaneous telomere loss has been proposed as an important mechanism for initiating the
chromosome instability commonly found in cancer cells. Studies have shown that spontaneous
telomere loss in a human cancer cell line initiates breakage/fusion/bridge (B/F/B) cycles that
continue for many cell generations, resulting in DNA amplification and translocations on the
chromosome that lost its telomere. For a chromosome that lost its telomeres, telomere acquisition
during B/F/B cycles occurs mainly through translocations involving either the nonreciprocal
transfer or duplication of the arms of other chromosomes. Telomere acquisition also occurs
through small duplications involving the sub-telomeric region of the other end of the same
chromosome. Although all of these mechanisms stabilized the chromosome that lost its telomere,
they differed in their consequences for the stability of the genome as a whole.
Loss of a telomere on the donor chromosome due to telomere acquisition also resulted into
consequently additional translocations, isochromosome formation, or complete loss of the donor
chromosome..
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Toxic effects of heavy metals : Lead and Arsenicsanjana502982
Heavy metals are naturally occuring metallic chemical elements that have relatively high density, and are toxic at even low concentrations. All toxic metals are termed as heavy metals irrespective of their atomic mass and density, eg. arsenic, lead, mercury, cadmium, thallium, chromium, etc.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
2. ● Chromosomes are thread-like structures present in the nucleus, which
carries genetic information from one generation to another. They play a
vital role in cell division, heredity, variation, mutation, repair and
regeneration.
● In Eukaryotic cells, genetic material is present in the nucleus in
chromosomes, which is made up of highly organized DNA molecules with
histone proteins supporting its structure.
● Each cell has a pair of each kind of chromosome known as a Homologous
chromosome.
● Chromosomes are made up of chromatin, which contains a single molecule
of DNA and associated proteins. Each chromosome contains hundreds and
thousands of genes that can precisely code for several proteins in the cell.
Structure of a chromosome can be best seen during cell division.
BACKGROUND-CHROMOSOMES
3. ● A Telomere is a region of repetitive nucleotide sequences associated with
specialized proteins at the ends of linear chromosomes.
● Although there are different architectures, telomeres, in a broad sense, are a
widespread genetic feature most commonly found in eukaryotes.
● In most, if not all species possessing them, they protect the terminal
regions of chromosomal DNA from progressive degradation and ensure
the integrity of linear chromosomes by preventing DNA repair systems from
mistaking the very ends of the DNA strand for a double strand break.
● Telomere length varies greatly between species, from approximately 300
base pairs in yeast to many kilobases in humans, and usually is composed of
arrays of guanine-rich, six- to eight-base-pair-long repeats.
● Telomeres form large loop structures called Telomere loops, or T-loops.
Here, the single-stranded DNA curls around in a long circle, stabilized by
telomere-binding proteins.
TELOMERES
4. ● As is known the DNA in eukaryotic chromosomes is a linear molecule, the
termination in eukaryotic DNA also involve completing replication at the ends
of chromosomes known as Telomeres.
● During the synthesis of Okazaki fragments, RNA primer provide 3′-OH group
for 5′ to 3′ replication. On the removal of RNA primer, from the lagging strand
at the chromosome end, the end remains unreplicated and the newly
synthesized strand is shortened which is called End Replication problem.
● This shortening of the chromosome is prevented by the presence of special
repeats of sequences called telomeres (and telomere-associated proteins) at
the ends of DNA in chromosomes contain.
● Human Chromosomes are protected by telomeres having repeated sequences
of (TTAGGG)n of about 15–20 kb at birth. These structures protect the ends
of chromosomes from being mistakenly considered as DNA double strand
breaks (DSB).
END REPLICATION PROBLEM
6. ● In normal somatic cells, the telomeric region of eukaryotic chromosomes are shortened with each round of
DNA replication. After certain number of DNA replications, and hence cell divisions, the telomeres are
shortened to an extent that it leads to replicative cell senescence or apoptosis.
● Some cells like germ cells, cancer cells and some adult stem cells have the ability to reverse telomere
shortening by expressing telomerase, an enzyme that extends the telomeres of chromosomes.
● Telomerase is a reverse transcriptase which has a RNA template, known as template-encoding RNA molecule
(TER) for extension of the telomeric DNA. The basic protein component of telomerase is known as TERT
(Telomerase Reverse Transcriptase).
● The enzyme binds to a special RNA molecule that contains a sequence complementary to the telomeric repeat.
● It extends (adds nucleotides to) the overhanging strand of the telomere DNA using this complementary RNA
as a template. When the overhang is long enough, a matching strand can be made by the normal DNA
replication machinery (that is, using an RNA primer and DNA polymerase), producing double-stranded DNA.
● The primer may not be positioned right at the chromosome end and cannot be replaced with DNA, so an
overhang will still be present. However, the overall length of the telomere will be greater.
TELOMERASE
11. ● In somatic cells, the activity of telomerase, a reverse transcriptase that can elongate telomeric repeats, is
usually diminished after birth so that the telomere length is gradually shortened with cell divisions, and
triggers cellular senescence.
● In embryonic stem cells, telomerase is activated and maintains telomere length and cellular immortality;
however, the level of telomerase activity is low or absent in the majority of stem cells regardless of their
proliferative capacity.
● Thus, even in stem cells, except for embryonal stem cells and cancer stem cells, telomere shortening occurs
during replicative ageing, possibly at a slower rate than that in normal somatic cells.
● low levels of telomerase activity have been found in human adult stem cells including hematopoietic and non-
hematopoietic stem cells such as neuronal, skin, intestinal crypt, mammary epithelial, pancreas, adrenal cortex,
kidney, and mesenchymal stem cells (MSCs).
● The level of telomerase is low in the majority of human stem cells, whereas it is upregulated in cells that
undergo rapid expansion, such as committed hematopoietic progenitor cells, activated lymphocytes, or
keratinocytes, even within tissues with a low cell turnover such as the brain
TELOMERES AND TELOMERASE IN
STEM CELLS
14. DYSKERATOSIS CONGENITA
The critical importance of telomerase activity in human stem cells has been
recently highlighted as the aetiology of DKC. In this disease, a defect of the
telomerase RNA template gene results in the absence of telomerase activity and
premature telomere shortening, developing bone marrow failure, intestinal
disorder, or malignancy, typically under 50 years old.
APLASTIC ANAEMIA
Aplastic Anaemia results from the failure of bone marrow to produce sufficient
quantities of all hematopoietic lineages. The aetiology of this disease is unclear
in most cases, but is generally thought to be the result of HSC damage or loss.
Telomere length in peripheral blood granulocytes and monocytes in patients
with aplastic anaemia or related disorders was significantly shorter than that in
age-matched controls, and correlated with disease duration
DISEASES DUE TO LACK OF
TELOMERASE IN STEM CELLS
15. ● Hiyama E, Hiyama K. Telomere and telomerase in stem cells. Br J Cancer.
2007 Apr 10;96(7):1020-4. doi: 10.1038/sj.bjc.6603671. Epub 2007 Mar 13. PMID:
17353922; PMCID: PMC2360127.
● https://www.khanacademy.org/science/biology/dna-as-the-genetic-
material/dna-replication/a/telomeres-telomerase
● REVIEW: Telomerase: Structure, Functions, and Activity Regulation M. I.
Zvereva*, D. M. Shcherbakova, and O. A. Dontsova
● https://thebiotechnotes.com/2019/07/26/dna-replication-in-eukaryotes-
elongation-and-termination/
● Pictures from google images
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