Recombinant DNA
Technology
By
Dr. Priti D.Diwan
Assistant Professor
Department of Zoology
J.D.Patil Sangludkar Mahavidyalay Daryapur.
Recombinant DNA and
Gene Cloning
 Recombinant DNA (rDNA) is a form of artificial
DNA that is created by combining two or more
DNA sequences originating from different
organism.
 Recombinant DNA technology is a technology
which allows DNA to be produced via artificial
means. The procedure has been used to change
DNA in living organisms and may have even more
practical uses in the future.
Recombinant DNA technology is
one of the recent advances in
biotechnology, which was
developed by two scientists named
Boyer and Cohen in 1973.
Stanley N. Cohen (1935–) (top)
and Herbert Boyer (1936–)
(bottom), who constructed the
first recombinant DNA using
bacterial DNA and plasmids.
Stanley N. Cohen , who
received the Nobel Prize in
Medicine in 1986 for his
work on discoveries of
growth factors.
What is Recombinant DNA Technology?
 Recombinant DNA technology is a
technology which allows DNA to be
produced via artificial means.
 The procedure has been used to change
DNA in living organisms and may have even
more practical uses in the future.
 It is an area of medical science that is just
beginning to be researched in a concerted
effort.
 Recombinant DNA technology works by
taking DNA from two different sources and
combining that DNA into a single molecule.
That alone, however, will not do much.
 Recombinant DNA technology only becomes
useful when that artificially-created DNA is
reproduced. This is known as DNA cloning.
Brief Introduction
The basic concepts for
recombinant DNA technology
Concept of Recombinant DNA
 Recombinant DNA is a molecule that combines
DNA from two sources . Also known as gene
cloning.
 Creates a new combination of genetic material
– Human gene for insulin was placed in bacteria
– The bacteria are recombinant organisms and
produce insulin in large quantities for diabetics
– Genetically engineered drug in 1986
 Genetically modified organisms are possible
because of the universal nature of the genetic
code!
 Genetic engineering is the application of
this technology to the manipulation of
genes. These advances were made
possible by methods for amplification of
any particular DNA segment( how? ),
regardless of source, within bacterial
host cells. Or, in the language of
recombinant DNA technology, the
cloning of virtually any DNA sequence
became feasible.
Six steps of Recombinant DNA
1. Isolating (vector and target gene)
2. Cutting (Cleavage)
3. Joining (Ligation)
4. Transforming
5. Cloning
6. Selecting (Screening)
The basic procedures of
recombinant DNA technology
Six basic steps are common to most
recombinant DNA experiments
1. Isolation and purification of DNA.
Both vector and target DNA molecules
can be prepared by a variety of
routine methods, which are not
discussed here. In some cases, the
target DNA is synthesized in vitro.
2. Cleavage of DNA at particular sequences. As
we will see, cleaving DNA to generate
fragments of defined length, or with specific
endpoints, is crucial to recombinant DNA
technology. The DNA fragment of interest is
called insert DNA. In the laboratory, DNA is
usually cleaved by treating it with
commercially produced nucleases and
restriction endonucleases.
3. Ligation of DNA fragments.
A recombinant DNA molecule is usually
formed by cleaving the DNA of interest to
yield insert DNA and then ligating the insert
DNA to vector DNA (recombinant DNA or
chimeric DNA). DNA fragments are
typically joined using DNA ligase (also
commercially produced).
– T4 DNA Ligase
4. Introduction of recombinant DNA into
compatible host cells. In order to be
propagated, the recombinant DNA
molecule (insert DNA joined to vector
DNA) must be introduced into a
compatible host cell where it can replicate.
The direct uptake of foreign DNA by a host
cell is called genetic transformation (or
transformation). Recombinant DNA can
also be packaged into virus particles and
transferred to host cells by transfection.
5. Replication and expression of
recombinant DNA in host cells.
Cloning vectors allow insert DNA to be
replicated and, in some cases, expressed
in a host cell. The ability to clone and
express DNA efficiently depends on the
choice of appropriate vectors and hosts.
6. Identification of host cells that contain
recombinant DNA of interest. Vectors
usually contain easily scored genetic
markers, or genes, that allow the
selection of host cells that have taken up
foreign DNA. The identification of a
particular DNA fragment usually
involves an additional step—screening a
large number of recombinant DNA
clones. This is almost always the most
difficult step.
DNA cloning in a plasmid
vector permits amplification
of a DNA fragment.
Applications of Recombinant
DNA Technology
1. Analysis of Gene Structure and
Expression
2. Pharmaceutical Products
– Drugs
– Vaccines
3. Genetically modified organisms (GMO)
– Transgenic plants
– Transgenic animal
4. Application in medicine
• Insulin
– Hormone required to
properly process sugars
and fats
– Treat diabetes
– Now easily produced by
bacteria
• Growth hormone
deficiency
– Faulty pituitary and
regulation
– Now easily produced by
bacteria
Genetically modified organisms (GMO)
Use of recombinant plasmids in
agriculture
– plants with genetically desirable
traits
• herbicide or pesticide resistant corn
& soybean
– Decreases chemical insecticide use
– Increases production
• “Golden rice” with beta-carotene
– Required to make vitamin A, which in
deficiency causes blindness
 Crops have been
developed that are
better tasting, stay
fresh longer, and are
protected from disease
and insect infestations.
“Golden rice” has been
genetically modified to
contain beta-carotene
Insect-resistant tomato plants
The plant on the left contains a gene that encodes a
bacterial protein that is toxic to certain insects that
feed on tomato plants. The plant on the right is a
wild-type plant. Only the plant on the left is able to
grow when exposed to the insects.
Transgenic animals
Green fluorescence Red fluorescence
Transgenic animals
A transgenic
mouse
Mouse on right is
normal; mouse on
left is transgenic
animal expressing
rat growth hormone
Farm Animals and “Pharm”
Animals
 These transgenic sheep
carry a gene for a
human blood protein
– This protein may help in
the treatment of cystic
fibrosis
Other benefits of GMOs
 Disease resistance
 There are many viruses, fungi, bacteria that cause plant
diseases
 “Super-shrimp”
 Cold tolerance
 Antifreeze gene from cold water fish introduced to
tobacco and potato plants
 Drought tolerance & Salinity tolerance
 As populations expand, potential to grow crops in
otherwise inhospitable environments
What are restriction enzymes?
• Molecular scissors that cut double
stranded DNA molecules at specific
sequence that sequence is called as
recognition sequence or site .
• Found naturally in a wide variety of
prokaryotes
• An important tool for manipulating DNA.
• 3,000 enzymes have been identified,
around 200 have unique properties, many
are purified and available commercially
Discovery
• Arbor and Dussoix in 1962 discovered that
certain bacteria contain Endonucleases
which have the ability to cleave DNA.
• In 1970 Smith and colleagues purified and
characterized the cleavage site of a
Restriction Enzyme.
• Werner Arbor, Hamilton Smith and Daniel
Nathans shared the 1978 Nobel prize for
Medicine and Physiology for their
discovery of Restriction Enzymes.
Types of Restriction Endonucleases
Type I-Most complex and bifunctional i.e do restriction
as well as modification activity. Cleave DNA at random
site hence not used in rDNA technology. Eg Eco K,EcoB
TypeII-simple, cleave DNA at specific recognition
sequence site(Palindromic). There are more than 350
Type ii RE with 100 different recognition sites are uptill
known .They requires Mg 2+ Ions for cleavage. Only
Type II RE are used in rDNA technology.Eco R1,Hind III
Type III-These are intermediate between Type I & II
RE.Recognition site is asymmetrical sequence of 5-7
BP.Eg.EcoP1, EcoP15, Hint F3
Restriction Endonucleases nomenclature
Named for bacterial genus, species, strain, and type
Example: EcoR1
Genus: Escherichia
Species: coli
Strain: R
Order discovered: 1
Mechanism of Action
Restriction Endonuclease scan the length of the DNA , binds to the DNA
molecule when it recognizes a specific sequence and makes one cut in each
of the sugar phosphate backbones of the double helix – by hydrolyzing the
phoshphodiester bond. Specifically,the bond between the 3’ O atom and the P
atom is broken.
Recognition sites have symmetry (palindromic)
Able was I
I saw elbA
Restriction Endonucleases
Enzymes recognize specific 4-8 bp sequences
Some enzymes cut in a staggered fashion - “sticky ends”
Some enzymes cut in a direct fashion – “blunt ends”
In molecular cloning, a vector is a DNA molecule used as a
vehicle to artificially carry foreign genetic material into another
cell, where it can be replicated and/or expressed.
VECTOR
CLONING VECTORS
•Cloning vectors are DNA molecules that are used to "transport" cloned
sequences between biological hosts and the test tube.
•Most vectors are genetically engineered.
•A vector is used to amplify a single molecule of DNA into many copes.
Cloning vectors share common properties:
1. Ability to replicate.
2. Easy to isolate and purify
3. Contain a genetic marker for selection.
4. Unique restriction sites to facilitate cloning of insert DNA.
5. Minimum amount of nonessential DNA to optimize cloning
Recombinant Dna technology, Restriction Endonucleas and Vector

Recombinant Dna technology, Restriction Endonucleas and Vector

  • 1.
    Recombinant DNA Technology By Dr. PritiD.Diwan Assistant Professor Department of Zoology J.D.Patil Sangludkar Mahavidyalay Daryapur.
  • 2.
    Recombinant DNA and GeneCloning  Recombinant DNA (rDNA) is a form of artificial DNA that is created by combining two or more DNA sequences originating from different organism.  Recombinant DNA technology is a technology which allows DNA to be produced via artificial means. The procedure has been used to change DNA in living organisms and may have even more practical uses in the future.
  • 3.
    Recombinant DNA technologyis one of the recent advances in biotechnology, which was developed by two scientists named Boyer and Cohen in 1973.
  • 4.
    Stanley N. Cohen(1935–) (top) and Herbert Boyer (1936–) (bottom), who constructed the first recombinant DNA using bacterial DNA and plasmids. Stanley N. Cohen , who received the Nobel Prize in Medicine in 1986 for his work on discoveries of growth factors.
  • 5.
    What is RecombinantDNA Technology?  Recombinant DNA technology is a technology which allows DNA to be produced via artificial means.  The procedure has been used to change DNA in living organisms and may have even more practical uses in the future.  It is an area of medical science that is just beginning to be researched in a concerted effort.
  • 6.
     Recombinant DNAtechnology works by taking DNA from two different sources and combining that DNA into a single molecule. That alone, however, will not do much.  Recombinant DNA technology only becomes useful when that artificially-created DNA is reproduced. This is known as DNA cloning.
  • 7.
  • 8.
    The basic conceptsfor recombinant DNA technology
  • 9.
    Concept of RecombinantDNA  Recombinant DNA is a molecule that combines DNA from two sources . Also known as gene cloning.  Creates a new combination of genetic material – Human gene for insulin was placed in bacteria – The bacteria are recombinant organisms and produce insulin in large quantities for diabetics – Genetically engineered drug in 1986  Genetically modified organisms are possible because of the universal nature of the genetic code!
  • 10.
     Genetic engineeringis the application of this technology to the manipulation of genes. These advances were made possible by methods for amplification of any particular DNA segment( how? ), regardless of source, within bacterial host cells. Or, in the language of recombinant DNA technology, the cloning of virtually any DNA sequence became feasible.
  • 11.
    Six steps ofRecombinant DNA 1. Isolating (vector and target gene) 2. Cutting (Cleavage) 3. Joining (Ligation) 4. Transforming 5. Cloning 6. Selecting (Screening)
  • 12.
    The basic proceduresof recombinant DNA technology
  • 13.
    Six basic stepsare common to most recombinant DNA experiments 1. Isolation and purification of DNA. Both vector and target DNA molecules can be prepared by a variety of routine methods, which are not discussed here. In some cases, the target DNA is synthesized in vitro.
  • 14.
    2. Cleavage ofDNA at particular sequences. As we will see, cleaving DNA to generate fragments of defined length, or with specific endpoints, is crucial to recombinant DNA technology. The DNA fragment of interest is called insert DNA. In the laboratory, DNA is usually cleaved by treating it with commercially produced nucleases and restriction endonucleases.
  • 15.
    3. Ligation ofDNA fragments. A recombinant DNA molecule is usually formed by cleaving the DNA of interest to yield insert DNA and then ligating the insert DNA to vector DNA (recombinant DNA or chimeric DNA). DNA fragments are typically joined using DNA ligase (also commercially produced). – T4 DNA Ligase
  • 16.
    4. Introduction ofrecombinant DNA into compatible host cells. In order to be propagated, the recombinant DNA molecule (insert DNA joined to vector DNA) must be introduced into a compatible host cell where it can replicate. The direct uptake of foreign DNA by a host cell is called genetic transformation (or transformation). Recombinant DNA can also be packaged into virus particles and transferred to host cells by transfection.
  • 17.
    5. Replication andexpression of recombinant DNA in host cells. Cloning vectors allow insert DNA to be replicated and, in some cases, expressed in a host cell. The ability to clone and express DNA efficiently depends on the choice of appropriate vectors and hosts.
  • 18.
    6. Identification ofhost cells that contain recombinant DNA of interest. Vectors usually contain easily scored genetic markers, or genes, that allow the selection of host cells that have taken up foreign DNA. The identification of a particular DNA fragment usually involves an additional step—screening a large number of recombinant DNA clones. This is almost always the most difficult step.
  • 19.
    DNA cloning ina plasmid vector permits amplification of a DNA fragment.
  • 20.
  • 21.
    1. Analysis ofGene Structure and Expression 2. Pharmaceutical Products – Drugs – Vaccines 3. Genetically modified organisms (GMO) – Transgenic plants – Transgenic animal 4. Application in medicine
  • 23.
    • Insulin – Hormonerequired to properly process sugars and fats – Treat diabetes – Now easily produced by bacteria • Growth hormone deficiency – Faulty pituitary and regulation – Now easily produced by bacteria
  • 24.
    Genetically modified organisms(GMO) Use of recombinant plasmids in agriculture – plants with genetically desirable traits • herbicide or pesticide resistant corn & soybean – Decreases chemical insecticide use – Increases production • “Golden rice” with beta-carotene – Required to make vitamin A, which in deficiency causes blindness
  • 25.
     Crops havebeen developed that are better tasting, stay fresh longer, and are protected from disease and insect infestations. “Golden rice” has been genetically modified to contain beta-carotene
  • 27.
    Insect-resistant tomato plants Theplant on the left contains a gene that encodes a bacterial protein that is toxic to certain insects that feed on tomato plants. The plant on the right is a wild-type plant. Only the plant on the left is able to grow when exposed to the insects.
  • 28.
  • 29.
  • 30.
    A transgenic mouse Mouse onright is normal; mouse on left is transgenic animal expressing rat growth hormone
  • 31.
    Farm Animals and“Pharm” Animals  These transgenic sheep carry a gene for a human blood protein – This protein may help in the treatment of cystic fibrosis
  • 32.
    Other benefits ofGMOs  Disease resistance  There are many viruses, fungi, bacteria that cause plant diseases  “Super-shrimp”  Cold tolerance  Antifreeze gene from cold water fish introduced to tobacco and potato plants  Drought tolerance & Salinity tolerance  As populations expand, potential to grow crops in otherwise inhospitable environments
  • 33.
    What are restrictionenzymes? • Molecular scissors that cut double stranded DNA molecules at specific sequence that sequence is called as recognition sequence or site . • Found naturally in a wide variety of prokaryotes • An important tool for manipulating DNA. • 3,000 enzymes have been identified, around 200 have unique properties, many are purified and available commercially
  • 34.
    Discovery • Arbor andDussoix in 1962 discovered that certain bacteria contain Endonucleases which have the ability to cleave DNA. • In 1970 Smith and colleagues purified and characterized the cleavage site of a Restriction Enzyme. • Werner Arbor, Hamilton Smith and Daniel Nathans shared the 1978 Nobel prize for Medicine and Physiology for their discovery of Restriction Enzymes.
  • 35.
    Types of RestrictionEndonucleases Type I-Most complex and bifunctional i.e do restriction as well as modification activity. Cleave DNA at random site hence not used in rDNA technology. Eg Eco K,EcoB TypeII-simple, cleave DNA at specific recognition sequence site(Palindromic). There are more than 350 Type ii RE with 100 different recognition sites are uptill known .They requires Mg 2+ Ions for cleavage. Only Type II RE are used in rDNA technology.Eco R1,Hind III Type III-These are intermediate between Type I & II RE.Recognition site is asymmetrical sequence of 5-7 BP.Eg.EcoP1, EcoP15, Hint F3
  • 36.
    Restriction Endonucleases nomenclature Namedfor bacterial genus, species, strain, and type Example: EcoR1 Genus: Escherichia Species: coli Strain: R Order discovered: 1 Mechanism of Action Restriction Endonuclease scan the length of the DNA , binds to the DNA molecule when it recognizes a specific sequence and makes one cut in each of the sugar phosphate backbones of the double helix – by hydrolyzing the phoshphodiester bond. Specifically,the bond between the 3’ O atom and the P atom is broken.
  • 37.
    Recognition sites havesymmetry (palindromic) Able was I I saw elbA
  • 38.
    Restriction Endonucleases Enzymes recognizespecific 4-8 bp sequences Some enzymes cut in a staggered fashion - “sticky ends” Some enzymes cut in a direct fashion – “blunt ends”
  • 43.
    In molecular cloning,a vector is a DNA molecule used as a vehicle to artificially carry foreign genetic material into another cell, where it can be replicated and/or expressed. VECTOR
  • 45.
    CLONING VECTORS •Cloning vectorsare DNA molecules that are used to "transport" cloned sequences between biological hosts and the test tube. •Most vectors are genetically engineered. •A vector is used to amplify a single molecule of DNA into many copes. Cloning vectors share common properties: 1. Ability to replicate. 2. Easy to isolate and purify 3. Contain a genetic marker for selection. 4. Unique restriction sites to facilitate cloning of insert DNA. 5. Minimum amount of nonessential DNA to optimize cloning